Wall clock time and date at job start Mon Mar 30 2020 03:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29443 * 117.96442 * 2 1 4 4 C 1.50066 * 124.07396 * 180.46503 * 3 2 1 5 5 H 1.09001 * 109.35689 * 102.96607 * 4 3 2 6 6 C 1.52998 * 109.35861 * 222.68335 * 4 3 2 7 7 C 1.53007 * 110.15702 * 342.91253 * 4 3 2 8 8 C 1.53393 * 108.45532 * 49.40145 * 7 4 3 9 9 H 1.09008 * 109.80958 * 52.36770 * 8 7 4 10 10 C 1.52993 * 109.64441 * 172.89457 * 8 7 4 11 11 N 1.46905 * 109.47039 * 183.94758 * 10 8 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 C 1.50069 * 117.96116 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47228 * 269.98024 * 1 2 3 23 23 H 1.09001 * 109.46678 * 29.98053 * 1 2 3 24 24 H 1.08999 * 109.47175 * 149.97391 * 1 2 3 25 25 H 1.07999 * 117.96150 * 0.49123 * 3 2 1 26 26 H 1.09000 * 109.46552 * 60.00459 * 6 4 3 27 27 H 1.09000 * 109.47188 * 180.02562 * 6 4 3 28 28 H 1.08999 * 109.47295 * 300.00892 * 6 4 3 29 29 H 1.09005 * 109.62263 * 289.72320 * 7 4 3 30 30 H 1.08996 * 109.65065 * 169.10217 * 7 4 3 31 31 H 1.09001 * 109.47393 * 63.95039 * 10 8 7 32 32 H 1.08998 * 109.47408 * 303.94685 * 10 8 7 33 33 H 1.00901 * 110.99869 * 56.04956 * 11 10 8 34 34 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 35 35 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 36 36 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.35764 * 42.63732 * 21 2 1 38 38 H 1.08999 * 109.36172 * 283.05947 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3030 -0.0101 5 1 3.9336 1.5747 -1.0136 6 6 4.0044 2.4084 0.9699 7 6 4.2794 -0.0076 0.4022 8 6 3.6702 -1.1474 -0.4241 9 1 3.7164 -0.9004 -1.4848 10 6 4.4431 -2.4417 -0.1633 11 7 3.9175 -3.5082 -1.0262 12 6 4.6371 -4.7691 -0.8023 13 6 4.0720 -5.8368 -1.7032 14 1 3.2592 -5.6023 -2.3746 15 6 4.5918 -7.1135 -1.6695 16 7 5.5812 -7.3992 -0.8515 17 14 3.8908 -8.4370 -2.7857 18 1 4.6274 -8.4384 -4.0752 19 1 4.0344 -9.7628 -2.1323 20 1 2.4533 -8.1623 -3.0372 21 6 2.2106 -1.3255 -0.0006 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.5089 2.0378 0.0082 26 1 3.6735 2.1408 1.9734 27 1 5.0880 2.5263 0.9637 28 1 3.5355 3.3457 0.6706 29 1 4.1059 -0.1905 1.4626 30 1 5.3503 0.0537 0.2083 31 1 4.3275 -2.7298 0.8816 32 1 5.4993 -2.2847 -0.3822 33 1 3.9541 -3.2382 -1.9977 34 1 5.6948 -4.6285 -1.0254 35 1 4.5225 -5.0730 0.2382 36 1 5.9471 -8.2972 -0.8282 37 1 1.7118 -1.9991 -0.6975 38 1 2.1748 -1.7541 1.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235672711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:32 Heat of formation + Delta-G solvation = -20.424944 kcal Electronic energy + Delta-G solvation = -15178.487502 eV Core-core repulsion = 12826.488655 eV Total energy + Delta-G solvation = -2351.998847 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.12350 -35.43006 -33.42702 -32.87622 -31.23848 -27.15011 -26.58412 -26.37012 -24.03884 -21.51551 -20.91304 -20.23476 -17.53672 -16.35108 -15.46311 -14.77772 -14.68952 -14.24743 -14.01128 -13.65026 -13.32881 -12.88677 -12.62992 -12.35580 -12.26267 -11.95975 -11.83585 -11.46161 -11.40488 -11.14585 -10.99843 -10.75847 -10.65877 -10.36450 -10.19637 -9.94443 -9.70027 -9.11508 -8.58507 -8.45716 -7.22711 -6.00957 -4.02715 2.38192 3.33181 3.39107 3.43888 4.44740 4.70221 4.84229 4.90504 5.17875 5.31562 5.34967 5.36526 5.46767 5.51736 5.62763 5.67387 5.77312 5.82811 5.85709 5.94024 6.02215 6.07906 6.09349 6.22534 6.26206 6.35259 6.37020 6.58695 6.74690 6.84996 7.18433 7.29761 7.46369 7.81581 8.16357 8.44378 8.66084 9.06981 9.62150 11.10268 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043252 B = 0.005043 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.210442 B = 5551.252967 C = 6033.290344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C -0.169 4.169 4 C -0.057 4.057 5 H 0.073 0.927 6 C -0.141 4.141 7 C -0.110 4.110 8 C -0.082 4.082 9 H 0.066 0.934 10 C 0.064 3.936 11 N -0.689 5.689 12 C 0.193 3.807 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.899 3.101 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.069 4.069 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.017 0.983 33 H 0.327 0.673 34 H -0.015 1.015 35 H 0.027 0.973 36 H 0.261 0.739 37 H 0.083 0.917 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.256 17.185 2.485 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.114 4.114 3 C -0.188 4.188 4 C -0.075 4.075 5 H 0.091 0.909 6 C -0.198 4.198 7 C -0.148 4.148 8 C -0.100 4.100 9 H 0.085 0.915 10 C -0.066 4.066 11 N -0.319 5.319 12 C 0.067 3.933 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.106 4.106 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.083 0.917 25 H 0.114 0.886 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.035 0.965 33 H 0.143 0.857 34 H 0.002 0.998 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.663 16.859 2.989 18.034 hybrid contribution 0.558 -0.595 -0.939 1.243 sum -5.106 16.264 2.050 17.170 Atomic orbital electron populations 1.20961 0.93023 1.02178 1.01721 1.21125 0.95532 0.95640 0.99140 1.21811 0.95544 0.96835 1.04560 1.19950 0.92839 0.95487 0.99263 0.90872 1.21783 1.00910 0.97816 0.99341 1.21707 0.99196 0.93726 1.00140 1.21205 0.95020 0.94356 0.99467 0.91517 1.21933 0.95004 0.90980 0.98683 1.60651 1.58689 1.03674 1.08861 1.19544 0.91113 0.85188 0.97489 1.21203 1.17901 0.94346 1.21700 0.91985 1.24998 0.95089 0.98660 0.95885 1.69971 1.25615 1.20691 1.37567 0.86487 0.79491 0.80903 0.80458 1.20751 1.21258 1.19769 1.20351 0.94461 0.93437 1.02348 0.91912 0.92461 0.91697 0.88619 0.92719 0.92727 0.92993 0.91816 0.91984 0.91913 0.96492 0.85709 0.99751 0.95509 0.92955 0.89851 0.91092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 9.87 36.00 0.36 -0.97 16 2 C -0.11 -1.45 5.84 -100.94 -0.59 -2.04 16 3 C -0.17 -2.00 8.61 -35.90 -0.31 -2.31 16 4 C -0.06 -0.64 2.97 -92.08 -0.27 -0.92 16 5 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.14 -1.34 9.14 37.16 0.34 -1.00 16 7 C -0.11 -1.38 4.60 -26.52 -0.12 -1.51 16 8 C -0.08 -1.20 2.39 -90.41 -0.22 -1.42 16 9 H 0.07 1.00 8.13 -51.92 -0.42 0.58 16 10 C 0.06 1.16 5.08 -3.82 -0.02 1.14 16 11 N -0.69 -14.93 6.15 -115.06 -0.71 -15.64 16 12 C 0.19 5.17 5.44 -4.98 -0.03 5.15 16 13 C -0.51 -14.75 9.32 -34.44 -0.32 -15.07 16 14 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 17 Si 0.90 21.91 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 21 C -0.07 -1.01 4.88 -28.18 -0.14 -1.14 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 24 H 0.06 0.71 8.03 -51.93 -0.42 0.30 16 25 H 0.10 1.02 7.81 -52.49 -0.41 0.61 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.33 6.81 8.72 -39.29 -0.34 6.47 16 34 H -0.02 -0.43 8.14 -51.93 -0.42 -0.86 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.08 1.33 8.00 -51.93 -0.42 0.92 16 38 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 LS Contribution 306.14 15.07 4.61 4.61 Total: -1.00 -29.66 306.14 -8.82 -38.49 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.03 Total: 0.75 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -1.42 Total: -18.60 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.03 Total: -42.14 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.66 -8.82 -38.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235672711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.060 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds