Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.29443 * 117.96442 * 2 1 4 4 C 1.50066 * 124.07396 * 180.46503 * 3 2 1 5 5 H 1.09001 * 109.35689 * 102.96607 * 4 3 2 6 6 C 1.52998 * 109.35861 * 222.68335 * 4 3 2 7 7 C 1.53007 * 110.15702 * 342.91253 * 4 3 2 8 8 C 1.53393 * 108.45532 * 49.40145 * 7 4 3 9 9 H 1.09008 * 109.80958 * 52.36770 * 8 7 4 10 10 C 1.52993 * 109.64441 * 172.89457 * 8 7 4 11 11 N 1.46905 * 109.47039 * 183.94758 * 10 8 7 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 8 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 C 1.50069 * 117.96116 * 180.02562 * 2 1 3 22 22 H 1.09000 * 109.47228 * 269.98024 * 1 2 3 23 23 H 1.09001 * 109.46678 * 29.98053 * 1 2 3 24 24 H 1.08999 * 109.47175 * 149.97391 * 1 2 3 25 25 H 1.07999 * 117.96150 * 0.49123 * 3 2 1 26 26 H 1.09000 * 109.46552 * 60.00459 * 6 4 3 27 27 H 1.09000 * 109.47188 * 180.02562 * 6 4 3 28 28 H 1.08999 * 109.47295 * 300.00892 * 6 4 3 29 29 H 1.09005 * 109.62263 * 289.72320 * 7 4 3 30 30 H 1.08996 * 109.65065 * 169.10217 * 7 4 3 31 31 H 1.09001 * 109.47393 * 63.95039 * 10 8 7 32 32 H 1.08998 * 109.47408 * 303.94685 * 10 8 7 33 33 H 1.00901 * 110.99869 * 56.04956 * 11 10 8 34 34 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 35 35 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 36 36 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 37 37 H 1.09005 * 109.35764 * 42.63732 * 21 2 1 38 38 H 1.08999 * 109.36172 * 283.05947 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1140 1.1433 0.0000 4 6 3.6061 1.3030 -0.0101 5 1 3.9336 1.5747 -1.0136 6 6 4.0044 2.4084 0.9699 7 6 4.2794 -0.0076 0.4022 8 6 3.6702 -1.1474 -0.4241 9 1 3.7164 -0.9004 -1.4848 10 6 4.4431 -2.4417 -0.1633 11 7 3.9175 -3.5082 -1.0262 12 6 4.6371 -4.7691 -0.8023 13 6 4.0720 -5.8368 -1.7032 14 1 3.2592 -5.6023 -2.3746 15 6 4.5918 -7.1135 -1.6695 16 7 5.5812 -7.3992 -0.8515 17 14 3.8908 -8.4370 -2.7857 18 1 4.6274 -8.4384 -4.0752 19 1 4.0344 -9.7628 -2.1323 20 1 2.4533 -8.1623 -3.0372 21 6 2.2106 -1.3255 -0.0006 22 1 -0.3634 -0.0004 1.0277 23 1 -0.3633 0.8902 -0.5135 24 1 -0.3633 -0.8897 -0.5142 25 1 1.5089 2.0378 0.0082 26 1 3.6735 2.1408 1.9734 27 1 5.0880 2.5263 0.9637 28 1 3.5355 3.3457 0.6706 29 1 4.1059 -0.1905 1.4626 30 1 5.3503 0.0537 0.2083 31 1 4.3275 -2.7298 0.8816 32 1 5.4993 -2.2847 -0.3822 33 1 3.9541 -3.2382 -1.9977 34 1 5.6948 -4.6285 -1.0254 35 1 4.5225 -5.0730 0.2382 36 1 5.9471 -8.2972 -0.8282 37 1 1.7118 -1.9991 -0.6975 38 1 2.1748 -1.7541 1.0010 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235672711.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -37.580196 kcal Electronic energy + Delta-G solvation = -15179.231409 eV Core-core repulsion = 12826.488655 eV Total energy + Delta-G solvation = -2352.742755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.21074 -37.11804 -34.84061 -34.32177 -32.82511 -28.92503 -27.62269 -27.37392 -25.70726 -23.42516 -21.95557 -21.55304 -18.59265 -18.50848 -16.80360 -16.45887 -16.18384 -15.57790 -15.31042 -14.75969 -14.58167 -14.37995 -14.14196 -13.62557 -13.31309 -13.26238 -13.07716 -12.96277 -12.71437 -12.60741 -12.48368 -12.25692 -12.06464 -11.99078 -11.57379 -11.43430 -11.07632 -10.87904 -10.66343 -9.54229 -9.10143 -8.23213 -6.34708 1.40934 1.42944 1.43014 1.54868 2.39909 3.10080 3.50328 3.74097 3.82994 4.05310 4.22295 4.31786 4.43068 4.46808 4.65610 4.69541 4.72233 4.77804 4.87120 4.90917 4.95171 4.98714 5.04148 5.09749 5.15039 5.24080 5.25772 5.29479 5.39130 5.43034 5.56373 5.61440 5.87799 6.01508 6.20830 6.44660 6.72138 6.88875 7.36498 8.88654 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.043252 B = 0.005043 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.210442 B = 5551.252967 C = 6033.290344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.133 4.133 3 C -0.161 4.161 4 C -0.058 4.058 5 H 0.079 0.921 6 C -0.137 4.137 7 C -0.106 4.106 8 C -0.073 4.073 9 H 0.067 0.933 10 C 0.066 3.934 11 N -0.684 5.684 12 C 0.208 3.792 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.975 3.025 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.264 1.264 21 C -0.065 4.065 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.115 0.885 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.016 0.984 33 H 0.334 0.666 34 H -0.041 1.041 35 H -0.002 1.002 36 H 0.265 0.735 37 H 0.064 0.936 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 18.442 1.744 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.133 4.133 3 C -0.178 4.178 4 C -0.076 4.076 5 H 0.097 0.903 6 C -0.194 4.194 7 C -0.144 4.144 8 C -0.091 4.091 9 H 0.086 0.914 10 C -0.064 4.064 11 N -0.315 5.315 12 C 0.080 3.920 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.188 1.188 21 C -0.102 4.102 22 H 0.088 0.912 23 H 0.091 0.909 24 H 0.076 0.924 25 H 0.133 0.867 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.150 0.850 34 H -0.024 1.024 35 H 0.016 0.984 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.559 18.144 2.247 19.424 hybrid contribution 0.877 -0.942 -0.669 1.450 sum -5.683 17.203 1.578 18.186 Atomic orbital electron populations 1.20949 0.91748 1.02611 1.02302 1.21104 0.96533 0.94739 1.00889 1.22042 0.96000 0.97099 1.02706 1.19994 0.92439 0.95073 1.00119 0.90297 1.21747 1.01541 0.97573 0.98585 1.21681 0.99566 0.93647 0.99499 1.21110 0.94886 0.93155 0.99991 0.91418 1.22001 0.95459 0.91534 0.97369 1.60528 1.57997 1.03122 1.09824 1.19203 0.90010 0.87373 0.95440 1.21552 1.18268 0.95340 1.22227 0.91686 1.25985 0.95224 1.01219 0.97356 1.70102 1.26846 1.21543 1.39087 0.85298 0.79023 0.77405 0.78362 1.19599 1.20670 1.18832 1.20238 0.94345 0.94598 1.01055 0.91249 0.90895 0.92411 0.86716 0.92930 0.92039 0.91571 0.92055 0.91435 0.92851 0.96618 0.84961 1.02371 0.98426 0.92599 0.91769 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 9.87 71.24 0.70 -1.70 16 2 C -0.13 -3.18 5.84 -15.10 -0.09 -3.27 16 3 C -0.16 -3.39 8.61 27.04 0.23 -3.16 16 4 C -0.06 -1.17 2.97 -11.74 -0.03 -1.20 16 5 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 6 C -0.14 -2.21 9.14 71.98 0.66 -1.55 16 7 C -0.11 -2.54 4.60 30.73 0.14 -2.40 16 8 C -0.07 -2.12 2.39 -10.66 -0.03 -2.14 16 9 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 10 C 0.07 2.43 5.08 86.30 0.44 2.87 16 11 N -0.68 -30.43 6.15 -517.93 -3.19 -33.62 16 12 C 0.21 11.52 5.44 85.56 0.47 11.98 16 13 C -0.54 -31.27 9.32 25.60 0.24 -31.03 16 14 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 15 C 0.00 0.01 5.46 84.66 0.46 0.47 16 16 N -0.94 -57.57 13.29 21.45 0.28 -57.28 16 17 Si 0.98 44.84 29.54 68.60 2.03 46.86 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 21 C -0.07 -1.90 4.88 29.66 0.14 -1.76 16 22 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.07 1.23 7.90 -2.39 -0.02 1.21 16 24 H 0.06 1.22 8.03 -2.39 -0.02 1.21 16 25 H 0.11 2.03 7.81 -2.91 -0.02 2.01 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.06 1.50 8.10 -2.38 -0.02 1.48 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 2.06 8.11 -2.39 -0.02 2.04 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.33 14.09 8.72 -89.69 -0.78 13.31 16 34 H -0.04 -2.46 8.14 -2.39 -0.02 -2.48 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.06 2.09 8.00 -2.38 -0.02 2.07 16 38 H 0.06 1.81 8.08 -2.39 -0.02 1.80 16 Total: -1.00 -63.63 306.14 2.67 -60.96 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: 0.21 Total: 15.95 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 3.34 Total: -32.87 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -2.90 Total: -90.90 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -63.63 2.67 -60.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235672711.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.376 kcal (2) G-P(sol) polarization free energy of solvation -63.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds