Wall clock time and date at job start Mon Mar 30 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.90840 * 2 1 4 4 C 1.55138 * 110.99653 * 236.12857 * 2 1 3 5 5 C 1.54320 * 103.02210 * 206.25748 * 4 2 1 6 6 N 1.47437 * 107.23257 * 22.28526 * 5 4 2 7 7 C 1.46901 * 111.00223 * 123.25511 * 6 5 4 8 8 H 1.08993 * 110.43399 * 300.24390 * 7 6 5 9 9 C 1.54888 * 110.48596 * 177.70225 * 7 6 5 10 10 C 1.54900 * 102.74625 * 203.38123 * 9 7 6 11 11 C 1.54262 * 104.19263 * 37.94267 * 10 9 7 12 12 H 1.09005 * 110.03245 * 95.67503 * 11 10 9 13 13 C 1.50701 * 110.02914 * 217.05562 * 11 10 9 14 14 H 1.07997 * 120.00313 * 118.55014 * 13 11 10 15 15 C 1.37883 * 120.00055 * 298.54494 * 13 11 10 16 16 N 1.31512 * 120.00070 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 119.99897 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47193 * 89.99818 * 17 15 13 19 19 H 1.48498 * 109.47021 * 209.99602 * 17 15 13 20 20 H 1.48496 * 109.47261 * 329.99815 * 17 15 13 21 21 C 1.53865 * 106.60402 * 336.38844 * 11 10 9 22 22 C 1.47846 * 108.56923 * 0.98995 * 6 5 4 23 23 H 1.08996 * 109.47390 * 296.14041 * 1 2 3 24 24 H 1.09006 * 109.46471 * 56.13782 * 1 2 3 25 25 H 1.08997 * 109.46870 * 176.13119 * 1 2 3 26 26 H 1.09000 * 110.70480 * 87.87387 * 4 2 1 27 27 H 1.08999 * 110.85101 * 324.71206 * 4 2 1 28 28 H 1.08998 * 109.88703 * 262.87492 * 5 4 2 29 29 H 1.08999 * 109.88555 * 141.69210 * 5 4 2 30 30 H 1.09004 * 110.76034 * 321.68943 * 9 7 6 31 31 H 1.08999 * 110.75869 * 85.06859 * 9 7 6 32 32 H 1.09003 * 110.48231 * 156.62254 * 10 9 7 33 33 H 1.09000 * 110.48601 * 279.26311 * 10 9 7 34 34 H 0.97003 * 120.00344 * 180.02562 * 16 15 13 35 35 H 1.09000 * 110.03758 * 240.71495 * 21 11 10 36 36 H 1.09006 * 110.03668 * 119.28391 * 21 11 10 37 37 H 1.08995 * 110.38030 * 94.73340 * 22 6 5 38 38 H 1.09000 * 110.37255 * 217.07995 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0859 -0.8072 -1.2026 5 6 3.4693 -1.2712 -0.7003 6 7 3.4313 -1.2420 0.7733 7 6 3.7610 -2.5589 1.3347 8 1 3.0511 -3.3093 0.9872 9 6 3.7740 -2.5006 2.8824 10 6 4.6874 -3.6927 3.2617 11 6 5.7914 -3.6811 2.1843 12 1 6.6650 -3.1418 2.5506 13 6 6.1721 -5.0930 1.8201 14 1 6.0341 -5.4458 0.8088 15 6 6.6968 -5.9345 2.7782 16 7 7.0286 -7.1668 2.4605 17 14 6.9350 -5.3246 4.5276 18 1 5.7073 -5.5958 5.3179 19 1 8.0869 -6.0296 5.1451 20 1 7.2001 -3.8635 4.5107 21 6 5.2025 -2.9603 0.9591 22 6 2.0849 -0.8059 1.2010 23 1 -0.3634 0.4527 0.9225 24 1 -0.3632 0.5727 -0.8534 25 1 -0.3633 -1.0253 -0.0693 26 1 2.1886 -0.1693 -2.0804 27 1 1.4486 -1.6637 -1.4227 28 1 4.2422 -0.5945 -1.0648 29 1 3.6683 -2.2855 -1.0461 30 1 4.2020 -1.5603 3.2301 31 1 2.7699 -2.6406 3.2827 32 1 5.1186 -3.5430 4.2515 33 1 4.1287 -4.6280 3.2254 34 1 7.3973 -7.7589 3.1345 35 1 5.1915 -3.6316 0.1004 36 1 5.7902 -2.0710 0.7308 37 1 1.4522 -1.6703 1.4027 38 1 2.1544 -0.1711 2.0843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:41 Heat of formation + Delta-G solvation = -14.061062 kcal Electronic energy + Delta-G solvation = -15897.545485 eV Core-core repulsion = 13545.822597 eV Total energy + Delta-G solvation = -2351.722889 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34327 -36.74867 -32.99850 -31.81950 -29.73245 -28.09898 -27.55996 -25.09562 -23.43331 -21.23803 -20.29910 -19.60603 -18.43214 -16.88709 -16.00277 -15.68164 -14.75165 -13.96805 -13.67099 -13.49151 -13.19862 -12.93967 -12.73639 -12.58397 -12.23629 -12.03620 -11.67552 -11.04978 -10.96627 -10.76003 -10.70147 -10.59558 -10.32297 -10.24818 -10.04040 -9.80231 -9.66166 -9.27371 -8.88146 -8.49000 -7.98988 -6.01766 -3.99388 3.33410 3.42079 3.45147 4.22159 4.47830 4.56808 4.73088 4.91824 5.24057 5.29663 5.39802 5.44642 5.47087 5.54748 5.61955 5.73107 5.79308 5.85723 5.89966 5.96990 6.10118 6.13371 6.20520 6.32658 6.38247 6.46207 6.52701 6.66060 6.74348 6.97901 6.99693 7.21196 7.34878 7.54961 7.62420 7.88060 8.59639 9.02385 9.61980 11.11694 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054342 B = 0.006526 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.132420 B = 4289.214773 C = 4555.806035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.081 0.919 4 C -0.138 4.138 5 C 0.042 3.958 6 N -0.525 5.525 7 C 0.076 3.924 8 H 0.042 0.958 9 C -0.112 4.112 10 C -0.130 4.130 11 C 0.011 3.989 12 H 0.029 0.971 13 C -0.508 4.508 14 H 0.072 0.928 15 C 0.068 3.932 16 N -0.905 5.905 17 Si 0.881 3.119 18 H -0.278 1.278 19 H -0.295 1.295 20 H -0.264 1.264 21 C -0.094 4.094 22 C 0.048 3.952 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.262 0.738 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.181 13.492 -3.457 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 H 0.099 0.901 4 C -0.176 4.176 5 C -0.086 4.086 6 N -0.249 5.249 7 C -0.032 4.032 8 H 0.060 0.940 9 C -0.150 4.150 10 C -0.168 4.168 11 C -0.008 4.008 12 H 0.047 0.953 13 C -0.545 4.545 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.204 1.204 19 H -0.223 1.223 20 H -0.189 1.189 21 C -0.132 4.132 22 C -0.080 4.080 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.716 13.652 -3.206 17.648 hybrid contribution -0.446 -0.502 0.713 0.980 sum -11.162 13.149 -2.493 17.427 Atomic orbital electron populations 1.21713 0.94779 1.01779 1.01581 1.22306 0.95255 0.99644 0.95064 0.90099 1.22866 0.97093 0.99669 0.98007 1.22776 0.96495 1.01068 0.88279 1.63700 1.26119 1.27851 1.07195 1.22761 0.97940 0.87370 0.95090 0.94016 1.22506 0.98787 0.99487 0.94185 1.22828 0.98180 0.96949 0.98871 1.19698 0.93345 0.96557 0.91181 0.95312 1.21202 1.41126 0.94351 0.97869 0.91026 1.25014 0.94858 0.94664 0.98713 1.69912 1.44048 1.06133 1.34334 0.86907 0.77433 0.79298 0.85371 1.20441 1.22253 1.18921 1.22138 0.92873 0.98649 0.99575 1.23054 0.89260 0.98069 0.97613 0.92555 0.92681 0.92718 0.91199 0.91671 0.90880 0.92340 0.91508 0.93326 0.93739 0.91443 0.92813 0.92433 0.92699 0.93768 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.30 37.16 0.35 -0.92 16 2 C -0.10 -1.12 3.63 -88.48 -0.32 -1.44 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.14 -1.54 6.41 -24.91 -0.16 -1.70 16 5 C 0.04 0.58 6.37 -2.84 -0.02 0.56 16 6 N -0.52 -8.13 4.99 -221.32 -1.10 -9.24 16 7 C 0.08 1.38 2.12 -66.05 -0.14 1.24 16 8 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 9 C -0.11 -2.03 5.76 -24.73 -0.14 -2.17 16 10 C -0.13 -2.85 4.61 -25.07 -0.12 -2.96 16 11 C 0.01 0.27 2.39 -90.66 -0.22 0.06 16 12 H 0.03 0.71 7.22 -51.93 -0.37 0.34 16 13 C -0.51 -14.43 8.96 -34.44 -0.31 -14.74 16 14 H 0.07 2.20 7.57 -52.49 -0.40 1.80 16 15 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 16 N -0.91 -28.10 13.96 55.43 0.77 -27.33 16 17 Si 0.88 22.21 24.63 -169.99 -4.19 18.02 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 20 H -0.26 -6.42 6.34 56.52 0.36 -6.06 16 21 C -0.09 -1.95 5.14 -25.62 -0.13 -2.08 16 22 C 0.05 0.63 5.46 -2.29 -0.01 0.61 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.50 8.09 -51.93 -0.42 0.08 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.73 8.00 -51.93 -0.42 0.31 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.86 7.13 -51.93 -0.37 0.49 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.97 5.72 -51.93 -0.30 0.67 16 33 H 0.07 1.56 7.85 -51.93 -0.41 1.15 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.06 1.23 7.29 -51.93 -0.38 0.85 16 36 H 0.05 1.09 8.03 -51.93 -0.42 0.67 16 37 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 38 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 285.91 15.07 4.31 4.31 Total: -1.00 -29.84 285.91 -8.39 -38.23 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -6.86 Total: -2.34 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: -1.32 Total: -21.64 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.33 Total: -36.57 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.19 Total: 18.02 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.84 -8.39 -38.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.165 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds