Wall clock time and date at job start Mon Mar 30 2020 03:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.90840 * 2 1 4 4 C 1.55138 * 110.99653 * 236.12857 * 2 1 3 5 5 C 1.54320 * 103.02210 * 206.25748 * 4 2 1 6 6 N 1.47437 * 107.23257 * 22.28526 * 5 4 2 7 7 C 1.46901 * 111.00223 * 123.25511 * 6 5 4 8 8 H 1.08993 * 110.43399 * 300.24390 * 7 6 5 9 9 C 1.54888 * 110.48596 * 177.70225 * 7 6 5 10 10 C 1.54900 * 102.74625 * 203.38123 * 9 7 6 11 11 C 1.54262 * 104.19263 * 37.94267 * 10 9 7 12 12 H 1.09005 * 110.03245 * 95.67503 * 11 10 9 13 13 C 1.50701 * 110.02914 * 217.05562 * 11 10 9 14 14 H 1.07997 * 120.00313 * 118.55014 * 13 11 10 15 15 C 1.37883 * 120.00055 * 298.54494 * 13 11 10 16 16 N 1.31512 * 120.00070 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 119.99897 * 0.02562 * 15 13 11 18 18 H 1.48504 * 109.47193 * 89.99818 * 17 15 13 19 19 H 1.48498 * 109.47021 * 209.99602 * 17 15 13 20 20 H 1.48496 * 109.47261 * 329.99815 * 17 15 13 21 21 C 1.53865 * 106.60402 * 336.38844 * 11 10 9 22 22 C 1.47846 * 108.56923 * 0.98995 * 6 5 4 23 23 H 1.08996 * 109.47390 * 296.14041 * 1 2 3 24 24 H 1.09006 * 109.46471 * 56.13782 * 1 2 3 25 25 H 1.08997 * 109.46870 * 176.13119 * 1 2 3 26 26 H 1.09000 * 110.70480 * 87.87387 * 4 2 1 27 27 H 1.08999 * 110.85101 * 324.71206 * 4 2 1 28 28 H 1.08998 * 109.88703 * 262.87492 * 5 4 2 29 29 H 1.08999 * 109.88555 * 141.69210 * 5 4 2 30 30 H 1.09004 * 110.76034 * 321.68943 * 9 7 6 31 31 H 1.08999 * 110.75869 * 85.06859 * 9 7 6 32 32 H 1.09003 * 110.48231 * 156.62254 * 10 9 7 33 33 H 1.09000 * 110.48601 * 279.26311 * 10 9 7 34 34 H 0.97003 * 120.00344 * 180.02562 * 16 15 13 35 35 H 1.09000 * 110.03758 * 240.71495 * 21 11 10 36 36 H 1.09006 * 110.03668 * 119.28391 * 21 11 10 37 37 H 1.08995 * 110.38030 * 94.73340 * 22 6 5 38 38 H 1.09000 * 110.37255 * 217.07995 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9190 1.0182 0.0000 4 6 2.0859 -0.8072 -1.2026 5 6 3.4693 -1.2712 -0.7003 6 7 3.4313 -1.2420 0.7733 7 6 3.7610 -2.5589 1.3347 8 1 3.0511 -3.3093 0.9872 9 6 3.7740 -2.5006 2.8824 10 6 4.6874 -3.6927 3.2617 11 6 5.7914 -3.6811 2.1843 12 1 6.6650 -3.1418 2.5506 13 6 6.1721 -5.0930 1.8201 14 1 6.0341 -5.4458 0.8088 15 6 6.6968 -5.9345 2.7782 16 7 7.0286 -7.1668 2.4605 17 14 6.9350 -5.3246 4.5276 18 1 5.7073 -5.5958 5.3179 19 1 8.0869 -6.0296 5.1451 20 1 7.2001 -3.8635 4.5107 21 6 5.2025 -2.9603 0.9591 22 6 2.0849 -0.8059 1.2010 23 1 -0.3634 0.4527 0.9225 24 1 -0.3632 0.5727 -0.8534 25 1 -0.3633 -1.0253 -0.0693 26 1 2.1886 -0.1693 -2.0804 27 1 1.4486 -1.6637 -1.4227 28 1 4.2422 -0.5945 -1.0648 29 1 3.6683 -2.2855 -1.0461 30 1 4.2020 -1.5603 3.2301 31 1 2.7699 -2.6406 3.2827 32 1 5.1186 -3.5430 4.2515 33 1 4.1287 -4.6280 3.2254 34 1 7.3973 -7.7589 3.1345 35 1 5.1915 -3.6316 0.1004 36 1 5.7902 -2.0710 0.7308 37 1 1.4522 -1.6703 1.4027 38 1 2.1544 -0.1711 2.0843 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259879032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:41 Heat of formation + Delta-G solvation = -33.011848 kcal Electronic energy + Delta-G solvation = -15898.367253 eV Core-core repulsion = 13545.822597 eV Total energy + Delta-G solvation = -2352.544656 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57412 -38.23606 -34.76377 -33.36731 -31.01893 -29.62559 -29.05198 -26.24185 -25.26252 -22.45257 -21.48707 -20.98402 -20.06230 -18.96891 -17.14785 -17.00868 -16.53687 -15.60113 -15.03673 -14.81739 -14.64253 -14.28105 -14.05794 -13.76510 -13.67320 -13.31196 -13.00406 -12.66391 -12.61334 -12.07879 -11.90047 -11.76647 -11.72339 -11.61772 -11.50038 -11.46625 -11.36083 -11.14365 -10.94782 -10.70740 -9.21145 -8.29110 -6.31851 1.32964 1.36377 1.47212 2.35015 3.03099 3.07075 3.62292 3.75954 3.87060 3.97534 4.05023 4.28991 4.38571 4.51640 4.57232 4.63372 4.69604 4.76511 4.81076 4.87185 4.90096 4.92935 4.98589 5.03773 5.05669 5.14396 5.19030 5.25168 5.31172 5.40786 5.46399 5.50132 5.63792 5.78790 6.14921 6.22999 6.33635 6.74799 7.33245 8.88030 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054342 B = 0.006526 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.132420 B = 4289.214773 C = 4555.806035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.088 0.912 4 C -0.132 4.132 5 C 0.036 3.964 6 N -0.530 5.530 7 C 0.087 3.913 8 H 0.030 0.970 9 C -0.099 4.099 10 C -0.130 4.130 11 C 0.006 3.994 12 H 0.025 0.975 13 C -0.514 4.514 14 H 0.028 0.972 15 C 0.011 3.989 16 N -0.954 5.954 17 Si 0.945 3.055 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.246 1.246 21 C -0.088 4.088 22 C 0.043 3.957 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.049 0.951 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.036 0.964 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 16.135 -2.349 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.106 0.894 4 C -0.171 4.171 5 C -0.092 4.092 6 N -0.255 5.255 7 C -0.022 4.022 8 H 0.048 0.952 9 C -0.136 4.136 10 C -0.168 4.168 11 C -0.013 4.013 12 H 0.043 0.957 13 C -0.552 4.552 14 H 0.047 0.953 15 C -0.186 4.186 16 N -0.595 5.595 17 Si 0.770 3.230 18 H -0.188 1.188 19 H -0.222 1.222 20 H -0.170 1.170 21 C -0.126 4.126 22 C -0.084 4.084 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.082 0.918 37 H 0.059 0.941 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.233 16.320 -2.112 20.504 hybrid contribution 0.046 -1.359 0.238 1.381 sum -12.187 14.960 -1.874 19.387 Atomic orbital electron populations 1.21685 0.93204 1.01873 1.02695 1.22292 0.96462 0.99373 0.93372 0.89371 1.22843 0.95218 1.00036 0.98954 1.22844 0.98517 1.00290 0.87546 1.63676 1.28015 1.25654 1.08106 1.22509 0.95598 0.88649 0.95418 0.95220 1.22420 0.99258 0.98127 0.93828 1.22691 0.97894 0.97988 0.98211 1.19702 0.94272 0.93829 0.93522 0.95733 1.21489 1.40825 0.96820 0.96095 0.95325 1.25898 0.94564 0.94621 1.03504 1.70063 1.45626 1.07750 1.36060 0.85877 0.77848 0.79659 0.79638 1.18819 1.22192 1.16951 1.21992 0.95070 0.98118 0.97439 1.23172 0.87902 0.98348 0.98991 0.91690 0.91333 0.93187 0.89313 0.91813 0.90447 0.94170 0.90232 0.90918 0.93065 0.93246 0.92632 0.94540 0.91841 0.94131 0.89892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.30 71.98 0.67 -1.33 16 2 C -0.10 -1.77 3.63 -9.41 -0.03 -1.80 16 3 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.13 -2.64 6.41 31.78 0.20 -2.44 16 5 C 0.04 0.94 6.37 86.65 0.55 1.49 16 6 N -0.53 -15.39 4.99 -854.11 -4.26 -19.65 16 7 C 0.09 3.03 2.12 45.99 0.10 3.13 16 8 H 0.03 1.11 8.13 -2.39 -0.02 1.09 16 9 C -0.10 -3.32 5.76 31.89 0.18 -3.13 16 10 C -0.13 -5.47 4.61 31.67 0.15 -5.33 16 11 C 0.01 0.29 2.39 -10.82 -0.03 0.26 16 12 H 0.02 1.20 7.22 -2.38 -0.02 1.18 16 13 C -0.51 -30.28 8.96 25.60 0.23 -30.05 16 14 H 0.03 1.87 7.57 -2.91 -0.02 1.85 16 15 C 0.01 0.63 5.45 84.66 0.46 1.09 16 16 N -0.95 -61.13 13.96 21.45 0.30 -60.83 16 17 Si 0.94 45.58 24.63 68.60 1.69 47.27 16 18 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.25 -11.04 6.34 99.48 0.63 -10.41 16 21 C -0.09 -3.66 5.14 31.32 0.16 -3.50 16 22 C 0.04 1.01 5.46 86.78 0.47 1.48 16 23 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.05 0.78 8.09 -2.39 -0.02 0.76 16 26 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.06 1.30 8.00 -2.39 -0.02 1.28 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.04 1.19 7.13 -2.39 -0.02 1.17 16 30 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 2.08 5.72 -2.39 -0.01 2.07 16 33 H 0.05 2.24 7.85 -2.39 -0.02 2.23 16 34 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.04 1.63 7.29 -2.39 -0.02 1.61 16 36 H 0.06 2.49 8.03 -2.38 -0.02 2.47 16 37 H 0.04 0.99 7.69 -2.39 -0.02 0.97 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -65.52 285.91 1.76 -63.76 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.92 Total: 9.57 kcal Atomic # 6 Polarization: -43.24 SS G_CDS: 3.12 Total: -40.12 kcal Atomic # 7 Polarization: -76.52 SS G_CDS: -3.96 Total: -80.48 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.69 Total: 47.27 kcal Total: -65.52 1.76 -63.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.745 kcal (2) G-P(sol) polarization free energy of solvation -65.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds