Wall clock time and date at job start Mon Mar 30 2020 03:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.27529 * 2 1 4 4 C 1.54596 * 110.30880 * 237.91504 * 2 1 3 5 5 C 1.55194 * 102.80393 * 219.04390 * 4 2 1 6 6 N 1.48540 * 103.23266 * 37.43483 * 5 4 2 7 7 C 1.46897 * 110.99757 * 200.25548 * 6 5 4 8 8 H 1.08998 * 110.67305 * 58.81362 * 7 6 5 9 9 C 1.54889 * 110.75794 * 295.57588 * 7 6 5 10 10 C 1.54468 * 104.10276 * 203.89483 * 9 7 6 11 11 C 1.53875 * 106.68477 * 23.34240 * 10 9 7 12 12 H 1.09003 * 110.03434 * 240.87812 * 11 10 9 13 13 C 1.50699 * 110.07492 * 119.46460 * 11 10 9 14 14 H 1.08003 * 120.00140 * 242.81061 * 13 11 10 15 15 C 1.37873 * 120.00044 * 62.80779 * 13 11 10 16 16 N 1.31516 * 119.99873 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00282 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47109 * 60.00289 * 17 15 13 19 19 H 1.48503 * 109.47424 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47224 * 300.00369 * 17 15 13 21 21 C 1.54268 * 106.59825 * 0.15872 * 11 10 9 22 22 C 1.47903 * 105.82150 * 320.76816 * 6 5 4 23 23 H 1.08998 * 109.46985 * 299.29605 * 1 2 3 24 24 H 1.08995 * 109.47223 * 59.30297 * 1 2 3 25 25 H 1.09005 * 109.46511 * 179.29495 * 1 2 3 26 26 H 1.08995 * 110.72758 * 337.38356 * 4 2 1 27 27 H 1.09004 * 110.72487 * 100.66905 * 4 2 1 28 28 H 1.09000 * 110.68406 * 278.99214 * 5 4 2 29 29 H 1.08999 * 110.79002 * 155.92812 * 5 4 2 30 30 H 1.08998 * 110.49005 * 322.42210 * 9 7 6 31 31 H 1.08998 * 110.48675 * 85.07019 * 9 7 6 32 32 H 1.08995 * 109.85966 * 264.10135 * 10 9 7 33 33 H 1.09001 * 110.16200 * 142.74780 * 10 9 7 34 34 H 0.97003 * 119.99895 * 180.02562 * 16 15 13 35 35 H 1.09002 * 110.48794 * 217.71199 * 21 11 10 36 36 H 1.08997 * 110.59735 * 95.12312 * 21 11 10 37 37 H 1.09002 * 109.91506 * 265.97862 * 22 6 5 38 38 H 1.09004 * 110.07995 * 144.77617 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0666 -0.7701 -1.2284 5 6 3.2882 -1.5325 -0.6497 6 7 2.8334 -1.9215 0.7098 7 6 3.9769 -2.2223 1.5814 8 1 4.6373 -1.3589 1.6615 9 6 4.7514 -3.4596 1.0635 10 6 5.4683 -4.0070 2.3176 11 6 4.6715 -3.5072 3.5353 12 1 5.3051 -2.8831 4.1656 13 6 4.1490 -4.6778 4.3275 14 1 3.0844 -4.8263 4.4333 15 6 5.0299 -5.5594 4.9172 16 7 6.3262 -5.3784 4.7887 17 14 4.3823 -7.0110 5.8985 18 1 3.5490 -7.8704 5.0196 19 1 5.5238 -7.8009 6.4258 20 1 3.5590 -6.5153 7.0306 21 6 3.4953 -2.6766 2.9817 22 6 2.0646 -0.7672 1.2235 23 1 -0.3633 0.5029 0.8962 24 1 -0.3633 0.5246 -0.8836 25 1 -0.3632 -1.0277 -0.0126 26 1 1.3180 -1.4679 -1.6034 27 1 2.3775 -0.0786 -2.0116 28 1 4.1581 -0.8782 -0.5917 29 1 3.5120 -2.4157 -1.2479 30 1 4.0607 -4.2032 0.6658 31 1 5.4759 -3.1658 0.3040 32 1 6.4886 -3.6256 2.3569 33 1 5.4778 -5.0968 2.2993 34 1 6.9459 -5.9989 5.2032 35 1 3.3051 -1.8127 3.6186 36 1 2.5989 -3.2909 2.8960 37 1 2.7149 -0.1204 1.8124 38 1 1.2328 -1.1145 1.8365 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259879036.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:43 Heat of formation + Delta-G solvation = -20.449119 kcal Electronic energy + Delta-G solvation = -15814.159369 eV Core-core repulsion = 13462.159474 eV Total energy + Delta-G solvation = -2351.999895 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15597 -36.52864 -33.02058 -31.57529 -29.50506 -28.11161 -26.53847 -25.32309 -23.41535 -21.40745 -20.08650 -19.27120 -18.54169 -16.39339 -15.54585 -15.49185 -14.54010 -14.38959 -13.71833 -13.46977 -13.19315 -12.69654 -12.42733 -12.26585 -11.90374 -11.71453 -11.34690 -10.97624 -10.84164 -10.73327 -10.57917 -10.52263 -10.46126 -10.13950 -9.94064 -9.75996 -9.52115 -9.06746 -8.61099 -8.28716 -8.00493 -5.93075 -3.95392 3.37168 3.41335 3.44446 4.34663 4.51195 4.69401 4.79960 4.92677 5.36716 5.43528 5.45942 5.50968 5.59565 5.68043 5.72737 5.83710 5.91216 5.99993 6.03074 6.07548 6.14975 6.22553 6.33969 6.39683 6.61132 6.67793 6.86240 6.89831 7.09895 7.26466 7.30047 7.47052 7.65726 7.81103 8.01050 8.08215 8.56972 9.07925 9.67850 11.16441 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.006175 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.643165 B = 4533.095323 C = 4840.634594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 H 0.068 0.932 4 C -0.119 4.119 5 C 0.035 3.965 6 N -0.508 5.508 7 C 0.067 3.933 8 H 0.037 0.963 9 C -0.113 4.113 10 C -0.090 4.090 11 C 0.046 3.954 12 H 0.024 0.976 13 C -0.508 4.508 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.101 4.101 22 C 0.042 3.958 23 H 0.053 0.947 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.259 0.741 35 H 0.037 0.963 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.007 9.297 -10.180 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.124 4.124 3 H 0.087 0.913 4 C -0.157 4.157 5 C -0.093 4.093 6 N -0.232 5.232 7 C -0.041 4.041 8 H 0.054 0.946 9 C -0.151 4.151 10 C -0.129 4.129 11 C 0.027 3.973 12 H 0.042 0.958 13 C -0.547 4.547 14 H 0.072 0.928 15 C -0.141 4.141 16 N -0.530 5.530 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.139 4.139 22 C -0.086 4.086 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.140 8.739 -10.121 15.159 hybrid contribution 0.370 -0.071 0.652 0.753 sum -6.770 8.669 -9.469 14.513 Atomic orbital electron populations 1.21811 0.94626 1.02120 1.01151 1.22013 0.96256 0.98821 0.95321 0.91313 1.22616 0.97828 0.98554 0.96701 1.23218 0.95876 0.98662 0.91538 1.64853 1.21638 1.34925 1.01736 1.22960 0.89996 0.96792 0.94353 0.94556 1.22464 0.97800 0.96305 0.98491 1.22062 0.96880 1.00988 0.92973 1.19209 0.91236 0.94057 0.92805 0.95760 1.21227 0.92635 1.09411 1.31402 0.92762 1.24981 0.94896 0.97860 0.96405 1.69980 1.01103 1.37222 1.44737 0.86724 0.78286 0.82853 0.80515 1.20300 1.21425 1.20383 1.22483 1.00856 0.98531 0.91997 1.22890 0.98167 0.91399 0.96179 0.92803 0.93047 0.92119 0.90795 0.91680 0.94356 0.90303 0.91759 0.94137 0.94644 0.91756 0.93148 0.94369 0.91601 0.94201 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.89 37.16 0.33 -1.07 16 2 C -0.11 -1.21 3.58 -89.26 -0.32 -1.53 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.12 -1.36 6.62 -24.73 -0.16 -1.52 16 5 C 0.04 0.49 5.97 -1.75 -0.01 0.48 16 6 N -0.51 -8.37 5.14 -219.95 -1.13 -9.50 16 7 C 0.07 1.27 2.23 -65.72 -0.15 1.12 16 8 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 9 C -0.11 -2.25 5.81 -24.96 -0.15 -2.39 16 10 C -0.09 -2.18 5.61 -25.51 -0.14 -2.32 16 11 C 0.05 1.17 2.82 -90.65 -0.26 0.92 16 12 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 13 C -0.51 -14.27 8.32 -34.44 -0.29 -14.56 16 14 H 0.05 1.51 7.54 -52.48 -0.40 1.11 16 15 C 0.06 1.69 5.09 -17.82 -0.09 1.60 16 16 N -0.89 -26.14 12.45 55.43 0.69 -25.45 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.10 -2.18 5.35 -25.07 -0.13 -2.31 16 22 C 0.04 0.60 5.75 -2.75 -0.02 0.59 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.07 0.84 7.86 -51.93 -0.41 0.43 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.53 8.00 -51.93 -0.42 0.11 16 29 H 0.08 1.08 8.09 -51.93 -0.42 0.66 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 1.70 7.26 -51.93 -0.38 1.33 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.49 7.68 -51.93 -0.40 1.09 16 37 H 0.04 0.59 7.73 -51.93 -0.40 0.19 16 38 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 LS Contribution 294.12 15.07 4.43 4.43 Total: -1.00 -28.69 294.12 -9.41 -38.09 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -7.00 Total: -3.24 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -1.38 Total: -21.01 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.44 Total: -34.95 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.69 -9.41 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259879036.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.644 kcal (2) G-P(sol) polarization free energy of solvation -28.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds