Wall clock time and date at job start Mon Mar 30 2020 02:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35028 * 1 3 3 C 1.40072 * 120.00072 * 2 1 4 4 H 1.08000 * 120.00129 * 154.99087 * 3 2 1 5 5 C 1.40311 * 120.00329 * 334.99002 * 3 2 1 6 6 N 1.30691 * 119.99585 * 342.80246 * 5 3 2 7 7 Si 1.86799 * 120.00460 * 162.79688 * 5 3 2 8 8 H 1.48503 * 109.46693 * 90.00295 * 7 5 3 9 9 H 1.48491 * 109.47163 * 210.00326 * 7 5 3 10 10 H 1.48501 * 109.47090 * 330.00266 * 7 5 3 11 11 C 1.50701 * 120.00344 * 180.02562 * 2 1 3 12 12 H 1.09009 * 109.49890 * 0.07712 * 11 2 1 13 13 C 1.53119 * 109.50530 * 120.19027 * 11 2 1 14 14 C 1.53118 * 109.16275 * 177.59689 * 13 11 2 15 15 C 1.53037 * 109.27772 * 302.35213 * 14 13 11 16 16 N 1.46847 * 109.52662 * 59.17706 * 15 14 13 17 17 C 1.46906 * 111.00136 * 174.16133 * 16 15 14 18 18 C 1.53001 * 109.46777 * 299.21004 * 17 16 15 19 19 C 1.53000 * 109.47026 * 59.20661 * 17 16 15 20 20 C 1.46847 * 111.19729 * 298.25653 * 16 15 14 21 21 H 1.08007 * 119.99858 * 354.27495 * 1 2 3 22 22 H 1.08002 * 120.00117 * 174.00814 * 1 2 3 23 23 H 0.97000 * 119.99922 * 179.97438 * 6 5 3 24 24 H 1.08996 * 109.52708 * 297.50786 * 13 11 2 25 25 H 1.09008 * 109.51731 * 57.69709 * 13 11 2 26 26 H 1.08993 * 109.50661 * 182.40870 * 14 13 11 27 27 H 1.08999 * 109.53229 * 62.30586 * 14 13 11 28 28 H 1.09000 * 109.46155 * 299.15825 * 15 14 13 29 29 H 1.08999 * 109.46140 * 179.19437 * 15 14 13 30 30 H 1.08997 * 109.46960 * 179.20769 * 17 16 15 31 31 H 1.08993 * 109.47111 * 60.00329 * 18 17 16 32 32 H 1.09001 * 109.46609 * 179.97438 * 18 17 16 33 33 H 1.08994 * 109.47044 * 299.99846 * 18 17 16 34 34 H 1.09004 * 109.46710 * 60.00029 * 19 17 16 35 35 H 1.08993 * 109.46981 * 179.97438 * 19 17 16 36 36 H 1.08990 * 109.47365 * 300.00563 * 19 17 16 37 37 H 1.09002 * 109.46612 * 301.72611 * 20 16 15 38 38 H 1.08994 * 109.46529 * 181.75737 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0547 1.2569 0.3954 5 6 1.4479 2.3713 -0.5137 6 7 0.3972 2.2739 -1.2848 7 14 2.1469 4.0523 -0.0955 8 1 3.1636 4.4316 -1.1092 9 1 1.0529 5.0563 -0.0917 10 1 2.7800 4.0050 1.2470 11 6 2.1039 -1.3051 -0.0006 12 1 1.3959 -2.1340 -0.0023 13 6 2.9881 -1.3843 -1.2482 14 6 3.7947 -2.6852 -1.2107 15 6 4.6258 -2.7276 0.0736 16 7 3.7343 -2.6497 1.2379 17 6 4.4848 -2.8267 2.4884 18 6 5.1514 -4.2038 2.4925 19 6 5.5570 -1.7408 2.5977 20 6 2.9840 -1.3875 1.2487 21 1 -0.5400 0.9307 0.0933 22 1 -0.5400 -0.9302 -0.0976 23 1 -0.0198 3.0746 -1.6397 24 1 2.3618 -1.3696 -2.1401 25 1 3.6695 -0.5336 -1.2663 26 1 4.4577 -2.7274 -2.0747 27 1 3.1144 -3.5366 -1.2321 28 1 5.3160 -1.8841 0.0876 29 1 5.1905 -3.6592 0.1102 30 1 3.8028 -2.7505 3.3353 31 1 5.8333 -4.2799 1.6457 32 1 5.7085 -4.3349 3.4202 33 1 4.3875 -4.9774 2.4146 34 1 5.0820 -0.7596 2.5947 35 1 6.1135 -1.8718 3.5257 36 1 6.2389 -1.8168 1.7509 37 1 3.6818 -0.5501 1.2571 38 1 2.3562 -1.3457 2.1386 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260067571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:55 Heat of formation + Delta-G solvation = -15.142923 kcal Electronic energy + Delta-G solvation = -16131.836511 eV Core-core repulsion = 13780.066710 eV Total energy + Delta-G solvation = -2351.769802 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.51181 -37.35108 -35.39709 -33.15840 -31.44950 -29.77479 -28.04122 -27.19172 -25.16155 -23.93161 -21.76887 -20.84922 -19.89980 -17.65838 -17.18724 -16.52678 -15.97061 -15.45343 -15.20178 -14.99606 -14.95427 -14.33487 -13.91950 -13.58963 -13.42418 -13.25627 -12.88048 -12.77787 -12.67148 -12.35337 -12.26355 -12.19858 -11.98731 -11.63936 -11.54598 -11.29237 -11.16200 -10.84989 -10.78154 -9.31745 -9.08162 -8.45843 -6.19594 1.28965 1.36757 1.48925 2.08976 2.27658 3.04246 3.34375 3.96266 4.04937 4.12137 4.18149 4.29912 4.43458 4.51006 4.56781 4.66055 4.79297 4.80328 4.87472 4.89178 4.96878 5.05216 5.09711 5.16981 5.19619 5.26826 5.30829 5.36403 5.44572 5.52039 5.53686 5.63195 6.09358 6.24214 6.32900 6.37489 6.93535 7.19507 7.44022 8.55468 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.032850 B = 0.008052 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.164151 B = 3476.541068 C = 3808.476795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.381 4.381 2 C 0.037 3.963 3 C -0.492 4.492 4 H 0.062 0.938 5 C 0.030 3.970 6 N -0.834 5.834 7 Si 0.964 3.036 8 H -0.264 1.264 9 H -0.273 1.273 10 H -0.261 1.261 11 C -0.039 4.039 12 H 0.046 0.954 13 C -0.096 4.096 14 C -0.110 4.110 15 C 0.055 3.945 16 N -0.539 5.539 17 C 0.069 3.931 18 C -0.135 4.135 19 C -0.182 4.182 20 C 0.087 3.913 21 H 0.061 0.939 22 H 0.040 0.960 23 H 0.276 0.724 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.082 0.918 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.097 0.903 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -8.250 4.511 14.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.422 4.422 2 C 0.035 3.965 3 C -0.523 4.523 4 H 0.080 0.920 5 C -0.183 4.183 6 N -0.462 5.462 7 Si 0.786 3.214 8 H -0.188 1.188 9 H -0.198 1.198 10 H -0.185 1.185 11 C -0.058 4.058 12 H 0.064 0.936 13 C -0.134 4.134 14 C -0.147 4.147 15 C -0.072 4.072 16 N -0.263 5.263 17 C -0.039 4.039 18 C -0.192 4.192 19 C -0.241 4.241 20 C -0.041 4.041 21 H 0.080 0.920 22 H 0.059 0.941 23 H 0.086 0.914 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.950 -8.528 4.337 14.541 hybrid contribution 0.068 1.817 -0.045 1.819 sum 11.018 -6.711 4.293 13.596 Atomic orbital electron populations 1.23146 0.95395 0.96268 1.27346 1.18749 0.92892 0.92677 0.92196 1.19271 1.00902 0.94012 1.38107 0.91957 1.26657 0.94780 1.04344 0.92477 1.69944 1.20292 1.31459 1.24503 0.85497 0.78688 0.77453 0.79780 1.18837 1.19832 1.18452 1.20144 0.95844 0.94946 0.94870 0.93554 1.21393 0.97630 0.97767 0.96563 1.21603 0.98771 0.96811 0.97546 1.22168 0.94017 1.01277 0.89780 1.62208 1.27161 1.33999 1.02975 1.21813 0.94080 0.96270 0.91735 1.21807 1.00292 0.94579 1.02542 1.22426 0.99772 0.98937 1.02939 1.21740 0.95371 0.89747 0.97212 0.92011 0.94096 0.91363 0.94330 0.93455 0.89985 0.91588 0.95312 0.88471 0.90818 0.91997 0.90701 0.92258 0.94420 0.90473 0.92197 0.95547 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -22.45 12.93 67.08 0.87 -21.58 16 2 C 0.04 2.03 4.58 -20.16 -0.09 1.94 16 3 C -0.49 -27.41 8.03 23.22 0.19 -27.22 16 4 H 0.06 3.35 6.95 -2.91 -0.02 3.33 16 5 C 0.03 1.63 5.09 85.37 0.43 2.06 16 6 N -0.83 -48.10 11.03 21.89 0.24 -47.86 16 7 Si 0.96 41.39 29.60 68.60 2.03 43.42 16 8 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 10 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 11 C -0.04 -1.78 2.52 -11.49 -0.03 -1.80 16 12 H 0.05 2.16 7.85 -2.38 -0.02 2.14 16 13 C -0.10 -3.92 5.13 30.67 0.16 -3.76 16 14 C -0.11 -3.38 6.09 30.65 0.19 -3.19 16 15 C 0.06 1.56 4.63 86.33 0.40 1.96 16 16 N -0.54 -17.08 4.64 -871.11 -4.04 -21.12 16 17 C 0.07 1.77 2.96 44.91 0.13 1.91 16 18 C -0.13 -2.62 8.99 71.98 0.65 -1.97 16 19 C -0.18 -4.44 8.50 71.98 0.61 -3.83 16 20 C 0.09 3.46 4.14 86.33 0.36 3.81 16 21 H 0.06 3.91 6.26 -2.91 -0.02 3.89 16 22 H 0.04 2.31 7.91 -2.91 -0.02 2.28 16 23 H 0.28 14.61 8.29 -92.71 -0.77 13.84 16 24 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.05 2.05 7.67 -2.38 -0.02 2.03 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.03 0.84 6.62 -2.39 -0.02 0.83 16 29 H 0.10 2.22 6.03 -2.39 -0.01 2.21 16 30 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 31 H 0.06 1.12 6.30 -2.39 -0.02 1.10 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.04 1.09 6.65 -2.39 -0.02 1.07 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.41 6.52 -2.39 -0.02 1.39 16 37 H 0.03 1.11 5.66 -2.39 -0.01 1.10 16 38 H 0.05 2.23 8.08 -2.39 -0.02 2.21 16 Total: -1.00 -62.34 287.90 3.10 -59.24 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 1.01 Total: 18.00 kcal Atomic # 6 Polarization: -55.54 SS G_CDS: 3.86 Total: -51.68 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: -3.80 Total: -68.98 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Total: -62.34 3.10 -59.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260067571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.099 kcal (2) G-P(sol) polarization free energy of solvation -62.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds