Wall clock time and date at job start Mon Mar 30 2020 02:41:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50701 * 109.47165 * 2 1
4 4 H 1.07998 * 119.99601 * 335.11985 * 3 2 1
5 5 C 1.37878 * 120.00116 * 155.11943 * 3 2 1
6 6 N 1.31519 * 119.99790 * 0.06483 * 5 3 2
7 7 Si 1.86793 * 120.00070 * 180.02562 * 5 3 2
8 8 H 1.48503 * 109.47167 * 359.97438 * 7 5 3
9 9 H 1.48499 * 109.47450 * 120.00060 * 7 5 3
10 10 H 1.48510 * 109.47042 * 239.99989 * 7 5 3
11 11 C 1.52993 * 109.47633 * 120.00530 * 2 1 3
12 12 C 1.53005 * 117.49743 * 6.09608 * 11 2 1
13 13 C 1.53007 * 117.49595 * 297.44210 * 11 2 1
14 14 N 1.46901 * 109.46859 * 240.00521 * 2 1 3
15 15 C 1.46846 * 111.00149 * 178.86563 * 14 2 1
16 16 C 1.53039 * 109.52393 * 174.15845 * 15 14 2
17 17 C 1.53110 * 109.27943 * 59.17812 * 16 15 14
18 18 C 1.53118 * 109.16396 * 302.34523 * 17 16 15
19 19 C 1.46847 * 111.00287 * 54.65083 * 14 2 1
20 20 H 1.08999 * 109.47541 * 59.99788 * 1 2 3
21 21 H 1.09005 * 109.46708 * 299.99213 * 1 2 3
22 22 H 1.08998 * 109.46983 * 180.02562 * 1 2 3
23 23 H 0.96997 * 120.00151 * 184.98291 * 6 5 3
24 24 H 1.08997 * 115.55615 * 151.76731 * 11 2 1
25 25 H 1.09001 * 117.49999 * 0.02562 * 12 11 2
26 26 H 1.08999 * 117.50071 * 145.02182 * 12 11 2
27 27 H 1.09005 * 117.49267 * 214.97537 * 13 11 2
28 28 H 1.08993 * 117.49703 * 359.96784 * 13 11 2
29 29 H 1.08994 * 109.46052 * 294.17644 * 15 14 2
30 30 H 1.09002 * 109.46018 * 54.14105 * 15 14 2
31 31 H 1.09005 * 109.50179 * 299.23346 * 16 15 14
32 32 H 1.09007 * 109.50209 * 179.12182 * 16 15 14
33 33 H 1.09003 * 109.52710 * 182.43902 * 17 16 15
34 34 H 1.09003 * 109.52373 * 62.24653 * 17 16 15
35 35 H 1.08999 * 109.49990 * 297.71733 * 18 17 16
36 36 H 1.08997 * 109.50915 * 177.59231 * 18 17 16
37 37 H 1.09002 * 109.46378 * 305.85832 * 19 14 2
38 38 H 1.09000 * 109.45661 * 65.82603 * 19 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 1 1.4123 2.2127 -0.3935
5 6 3.2834 1.7097 0.5024
6 7 4.0389 0.7451 0.9804
7 14 3.9058 3.4709 0.5030
8 1 2.8733 4.3610 -0.0862
9 1 4.1887 3.8955 1.8976
10 1 5.1505 3.5564 -0.3026
11 6 2.0401 -0.7213 1.2491
12 6 1.0033 -1.4042 2.1434
13 6 1.6859 -0.1156 2.6088
14 7 2.0196 -0.6924 -1.1995
15 6 3.4873 -0.6886 -1.2472
16 6 3.9629 -1.5398 -2.4267
17 6 3.3900 -0.9679 -3.7263
18 6 1.8620 -0.9380 -3.6317
19 6 1.4472 -0.1042 -2.4172
20 1 -0.3634 0.5138 -0.8899
21 1 -0.3633 0.5137 0.8901
22 1 -0.3633 -1.0277 0.0005
23 1 4.8878 0.9563 1.3994
24 1 3.0136 -1.2014 1.1502
25 1 -0.0421 -1.3399 1.8416
26 1 1.2949 -2.3333 2.6331
27 1 2.4265 -0.1975 3.4044
28 1 1.0900 0.7970 2.6133
29 1 3.8440 0.3340 -1.3701
30 1 3.8819 -1.1016 -0.3188
31 1 3.6183 -2.5658 -2.2975
32 1 5.0520 -1.5240 -2.4711
33 1 3.6907 -1.5963 -4.5647
34 1 3.7655 0.0445 -3.8756
35 1 1.4843 -1.9544 -3.5214
36 1 1.4499 -0.4922 -4.5370
37 1 0.3601 -0.0928 -2.3387
38 1 1.8135 0.9157 -2.5346
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260238634.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:14
Heat of formation + Delta-G solvation = 34.723497 kcal
Electronic energy + Delta-G solvation = -17025.509471 eV
Core-core repulsion = 14675.902039 eV
Total energy + Delta-G solvation = -2349.607431 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-38.65076 -36.15014 -32.90684 -31.74367 -29.82953 -28.35961 -25.26030 -23.58860
-22.16234 -21.19741 -20.83014 -18.76298 -17.99329 -16.03154 -15.57181 -14.61465
-13.92293 -13.67000 -13.50620 -13.15573 -12.78381 -12.53068 -12.17926 -11.86338
-11.35740 -11.21784 -10.89874 -10.65991 -10.64509 -10.48709 -10.21990 -10.13245
-10.07118 -9.62265 -9.45067 -9.24856 -8.79682 -8.73592 -8.62384 -8.19344
-6.73745 -5.89993 -4.11128 3.24633 3.34354 3.37973 4.38734 5.09236
5.38973 5.42722 5.62690 5.67345 5.76691 6.09632 6.20455 6.33228
6.37401 6.42547 6.48019 6.56726 6.62746 6.63942 6.66877 6.72373
6.75593 6.80547 6.91467 6.98260 7.06933 7.09240 7.18342 7.34534
7.52328 7.60318 7.71434 7.88828 7.98615 8.30586 8.61502 8.85753
8.97998 9.55943 10.98397
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.021318 B = 0.014935 C = 0.011238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1313.140053 B = 1874.322218 C = 2491.021751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.246 3.754
3 C -0.532 4.532
4 H 0.051 0.949
5 C 0.080 3.920
6 N -0.869 5.869
7 Si 0.880 3.120
8 H -0.276 1.276
9 H -0.284 1.284
10 H -0.286 1.286
11 C -0.040 4.040
12 C -0.236 4.236
13 C -0.158 4.158
14 N -0.530 5.530
15 C 0.077 3.923
16 C -0.123 4.123
17 C -0.115 4.115
18 C -0.114 4.114
19 C 0.060 3.940
20 H 0.037 0.963
21 H 0.043 0.957
22 H 0.038 0.962
23 H 0.257 0.743
24 H 0.110 0.890
25 H 0.080 0.920
26 H 0.065 0.935
27 H 0.066 0.934
28 H 0.077 0.923
29 H 0.042 0.958
30 H 0.090 0.910
31 H 0.054 0.946
32 H 0.047 0.953
33 H 0.044 0.956
34 H 0.052 0.948
35 H 0.058 0.942
36 H 0.047 0.953
37 H 0.058 0.942
38 H 0.031 0.969
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.863 -3.052 -3.639 5.102
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C 0.160 3.840
3 C -0.572 4.572
4 H 0.069 0.931
5 C -0.123 4.123
6 N -0.507 5.507
7 Si 0.708 3.292
8 H -0.201 1.201
9 H -0.211 1.211
10 H -0.212 1.212
11 C -0.059 4.059
12 C -0.273 4.273
13 C -0.196 4.196
14 N -0.255 5.255
15 C -0.051 4.051
16 C -0.161 4.161
17 C -0.153 4.153
18 C -0.152 4.152
19 C -0.069 4.069
20 H 0.056 0.944
21 H 0.063 0.937
22 H 0.057 0.943
23 H 0.068 0.932
24 H 0.128 0.872
25 H 0.099 0.901
26 H 0.084 0.916
27 H 0.085 0.915
28 H 0.096 0.904
29 H 0.061 0.939
30 H 0.108 0.892
31 H 0.073 0.927
32 H 0.066 0.934
33 H 0.063 0.937
34 H 0.071 0.929
35 H 0.077 0.923
36 H 0.066 0.934
37 H 0.076 0.924
38 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges -1.813 -3.579 -3.583 5.379
hybrid contribution 0.731 1.996 0.102 2.128
sum -1.082 -1.583 -3.481 3.974
Atomic orbital electron populations
1.21957 0.98187 0.98906 0.99611 1.18191 0.89277 0.90639 0.85939
1.21594 1.00344 0.93669 1.41604 0.93118 1.24837 0.96380 0.96242
0.94841 1.70094 1.12060 1.30189 1.38323 0.86728 0.78783 0.86012
0.77656 1.20087 1.21055 1.21178 1.21868 0.96033 0.98010 0.89993
1.23310 0.99093 0.95789 1.09156 1.22402 1.02207 0.94857 1.00089
1.62498 1.07380 1.53916 1.01720 1.22019 0.88217 0.98347 0.96563
1.21770 0.98409 1.00060 0.95908 1.21517 0.96198 1.00139 0.97445
1.21582 0.95564 1.00532 0.97488 1.21835 0.98532 0.96052 0.90455
0.94373 0.93750 0.94277 0.93223 0.87205 0.90124 0.91597 0.91496
0.90427 0.93949 0.89176 0.92748 0.93440 0.93707 0.92948 0.92284
0.93381 0.92367 0.95075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.74 6.64 37.16 0.25 -2.49 16
2 C 0.25 5.74 0.53 -132.76 -0.07 5.67 16
3 C -0.53 -13.60 6.19 -34.44 -0.21 -13.82 16
4 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16
5 C 0.08 2.05 3.71 -17.82 -0.07 1.99 16
6 N -0.87 -22.08 7.72 55.43 0.43 -21.65 16
7 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 16
8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
11 C -0.04 -0.93 3.31 -90.62 -0.30 -1.23 16
12 C -0.24 -4.87 9.53 -26.69 -0.25 -5.12 16
13 C -0.16 -3.52 8.83 -26.69 -0.24 -3.76 16
14 N -0.53 -11.78 4.47 -220.35 -0.99 -12.77 16
15 C 0.08 1.72 3.75 -3.83 -0.01 1.70 16
16 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16
17 C -0.12 -1.99 6.00 -26.61 -0.16 -2.15 16
18 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16
19 C 0.06 1.22 4.77 -3.83 -0.02 1.20 16
20 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16
21 H 0.04 0.93 7.13 -51.93 -0.37 0.56 16
22 H 0.04 0.78 7.10 -51.93 -0.37 0.42 16
23 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16
24 H 0.11 2.77 5.23 -51.93 -0.27 2.50 16
25 H 0.08 1.60 5.83 -51.93 -0.30 1.29 16
26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16
28 H 0.08 1.79 7.72 -51.93 -0.40 1.39 16
29 H 0.04 1.07 6.09 -51.93 -0.32 0.76 16
30 H 0.09 2.19 4.95 -51.93 -0.26 1.93 16
31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
32 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16
33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
37 H 0.06 1.15 5.88 -51.93 -0.31 0.84 16
38 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16
LS Contribution 273.35 15.07 4.12 4.12
Total: -1.00 -24.99 273.35 -9.10 -34.09
By element:
Atomic # 1 Polarization: 9.47 SS G_CDS: -6.23 Total: 3.24 kcal
Atomic # 6 Polarization: -21.21 SS G_CDS: -1.41 Total: -22.62 kcal
Atomic # 7 Polarization: -33.86 SS G_CDS: -0.56 Total: -34.42 kcal
Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal
Total LS contribution 4.12 Total: 4.12 kcal
Total: -24.99 -9.10 -34.09 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260238634.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.810 kcal
(2) G-P(sol) polarization free energy of solvation -24.988 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.822 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.723 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds