Wall clock time and date at job start Mon Mar 30 2020 02:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47165 * 2 1 4 4 H 1.07998 * 119.99601 * 335.11985 * 3 2 1 5 5 C 1.37878 * 120.00116 * 155.11943 * 3 2 1 6 6 N 1.31519 * 119.99790 * 0.06483 * 5 3 2 7 7 Si 1.86793 * 120.00070 * 180.02562 * 5 3 2 8 8 H 1.48503 * 109.47167 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47450 * 120.00060 * 7 5 3 10 10 H 1.48510 * 109.47042 * 239.99989 * 7 5 3 11 11 C 1.52993 * 109.47633 * 120.00530 * 2 1 3 12 12 C 1.53005 * 117.49743 * 6.09608 * 11 2 1 13 13 C 1.53007 * 117.49595 * 297.44210 * 11 2 1 14 14 N 1.46901 * 109.46859 * 240.00521 * 2 1 3 15 15 C 1.46846 * 111.00149 * 178.86563 * 14 2 1 16 16 C 1.53039 * 109.52393 * 174.15845 * 15 14 2 17 17 C 1.53110 * 109.27943 * 59.17812 * 16 15 14 18 18 C 1.53118 * 109.16396 * 302.34523 * 17 16 15 19 19 C 1.46847 * 111.00287 * 54.65083 * 14 2 1 20 20 H 1.08999 * 109.47541 * 59.99788 * 1 2 3 21 21 H 1.09005 * 109.46708 * 299.99213 * 1 2 3 22 22 H 1.08998 * 109.46983 * 180.02562 * 1 2 3 23 23 H 0.96997 * 120.00151 * 184.98291 * 6 5 3 24 24 H 1.08997 * 115.55615 * 151.76731 * 11 2 1 25 25 H 1.09001 * 117.49999 * 0.02562 * 12 11 2 26 26 H 1.08999 * 117.50071 * 145.02182 * 12 11 2 27 27 H 1.09005 * 117.49267 * 214.97537 * 13 11 2 28 28 H 1.08993 * 117.49703 * 359.96784 * 13 11 2 29 29 H 1.08994 * 109.46052 * 294.17644 * 15 14 2 30 30 H 1.09002 * 109.46018 * 54.14105 * 15 14 2 31 31 H 1.09005 * 109.50179 * 299.23346 * 16 15 14 32 32 H 1.09007 * 109.50209 * 179.12182 * 16 15 14 33 33 H 1.09003 * 109.52710 * 182.43902 * 17 16 15 34 34 H 1.09003 * 109.52373 * 62.24653 * 17 16 15 35 35 H 1.08999 * 109.49990 * 297.71733 * 18 17 16 36 36 H 1.08997 * 109.50915 * 177.59231 * 18 17 16 37 37 H 1.09002 * 109.46378 * 305.85832 * 19 14 2 38 38 H 1.09000 * 109.45661 * 65.82603 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.4123 2.2127 -0.3935 5 6 3.2834 1.7097 0.5024 6 7 4.0389 0.7451 0.9804 7 14 3.9058 3.4709 0.5030 8 1 2.8733 4.3610 -0.0862 9 1 4.1887 3.8955 1.8976 10 1 5.1505 3.5564 -0.3026 11 6 2.0401 -0.7213 1.2491 12 6 1.0033 -1.4042 2.1434 13 6 1.6859 -0.1156 2.6088 14 7 2.0196 -0.6924 -1.1995 15 6 3.4873 -0.6886 -1.2472 16 6 3.9629 -1.5398 -2.4267 17 6 3.3900 -0.9679 -3.7263 18 6 1.8620 -0.9380 -3.6317 19 6 1.4472 -0.1042 -2.4172 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 0.5137 0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 4.8878 0.9563 1.3994 24 1 3.0136 -1.2014 1.1502 25 1 -0.0421 -1.3399 1.8416 26 1 1.2949 -2.3333 2.6331 27 1 2.4265 -0.1975 3.4044 28 1 1.0900 0.7970 2.6133 29 1 3.8440 0.3340 -1.3701 30 1 3.8819 -1.1016 -0.3188 31 1 3.6183 -2.5658 -2.2975 32 1 5.0520 -1.5240 -2.4711 33 1 3.6907 -1.5963 -4.5647 34 1 3.7655 0.0445 -3.8756 35 1 1.4843 -1.9544 -3.5214 36 1 1.4499 -0.4922 -4.5370 37 1 0.3601 -0.0928 -2.3387 38 1 1.8135 0.9157 -2.5346 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238634.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:14 Heat of formation + Delta-G solvation = 34.723497 kcal Electronic energy + Delta-G solvation = -17025.509471 eV Core-core repulsion = 14675.902039 eV Total energy + Delta-G solvation = -2349.607431 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.65076 -36.15014 -32.90684 -31.74367 -29.82953 -28.35961 -25.26030 -23.58860 -22.16234 -21.19741 -20.83014 -18.76298 -17.99329 -16.03154 -15.57181 -14.61465 -13.92293 -13.67000 -13.50620 -13.15573 -12.78381 -12.53068 -12.17926 -11.86338 -11.35740 -11.21784 -10.89874 -10.65991 -10.64509 -10.48709 -10.21990 -10.13245 -10.07118 -9.62265 -9.45067 -9.24856 -8.79682 -8.73592 -8.62384 -8.19344 -6.73745 -5.89993 -4.11128 3.24633 3.34354 3.37973 4.38734 5.09236 5.38973 5.42722 5.62690 5.67345 5.76691 6.09632 6.20455 6.33228 6.37401 6.42547 6.48019 6.56726 6.62746 6.63942 6.66877 6.72373 6.75593 6.80547 6.91467 6.98260 7.06933 7.09240 7.18342 7.34534 7.52328 7.60318 7.71434 7.88828 7.98615 8.30586 8.61502 8.85753 8.97998 9.55943 10.98397 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.014935 C = 0.011238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.140053 B = 1874.322218 C = 2491.021751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.246 3.754 3 C -0.532 4.532 4 H 0.051 0.949 5 C 0.080 3.920 6 N -0.869 5.869 7 Si 0.880 3.120 8 H -0.276 1.276 9 H -0.284 1.284 10 H -0.286 1.286 11 C -0.040 4.040 12 C -0.236 4.236 13 C -0.158 4.158 14 N -0.530 5.530 15 C 0.077 3.923 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.114 4.114 19 C 0.060 3.940 20 H 0.037 0.963 21 H 0.043 0.957 22 H 0.038 0.962 23 H 0.257 0.743 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.058 0.942 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.863 -3.052 -3.639 5.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.160 3.840 3 C -0.572 4.572 4 H 0.069 0.931 5 C -0.123 4.123 6 N -0.507 5.507 7 Si 0.708 3.292 8 H -0.201 1.201 9 H -0.211 1.211 10 H -0.212 1.212 11 C -0.059 4.059 12 C -0.273 4.273 13 C -0.196 4.196 14 N -0.255 5.255 15 C -0.051 4.051 16 C -0.161 4.161 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.069 4.069 20 H 0.056 0.944 21 H 0.063 0.937 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.128 0.872 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.813 -3.579 -3.583 5.379 hybrid contribution 0.731 1.996 0.102 2.128 sum -1.082 -1.583 -3.481 3.974 Atomic orbital electron populations 1.21957 0.98187 0.98906 0.99611 1.18191 0.89277 0.90639 0.85939 1.21594 1.00344 0.93669 1.41604 0.93118 1.24837 0.96380 0.96242 0.94841 1.70094 1.12060 1.30189 1.38323 0.86728 0.78783 0.86012 0.77656 1.20087 1.21055 1.21178 1.21868 0.96033 0.98010 0.89993 1.23310 0.99093 0.95789 1.09156 1.22402 1.02207 0.94857 1.00089 1.62498 1.07380 1.53916 1.01720 1.22019 0.88217 0.98347 0.96563 1.21770 0.98409 1.00060 0.95908 1.21517 0.96198 1.00139 0.97445 1.21582 0.95564 1.00532 0.97488 1.21835 0.98532 0.96052 0.90455 0.94373 0.93750 0.94277 0.93223 0.87205 0.90124 0.91597 0.91496 0.90427 0.93949 0.89176 0.92748 0.93440 0.93707 0.92948 0.92284 0.93381 0.92367 0.95075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 6.64 37.16 0.25 -2.49 16 2 C 0.25 5.74 0.53 -132.76 -0.07 5.67 16 3 C -0.53 -13.60 6.19 -34.44 -0.21 -13.82 16 4 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 5 C 0.08 2.05 3.71 -17.82 -0.07 1.99 16 6 N -0.87 -22.08 7.72 55.43 0.43 -21.65 16 7 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 C -0.04 -0.93 3.31 -90.62 -0.30 -1.23 16 12 C -0.24 -4.87 9.53 -26.69 -0.25 -5.12 16 13 C -0.16 -3.52 8.83 -26.69 -0.24 -3.76 16 14 N -0.53 -11.78 4.47 -220.35 -0.99 -12.77 16 15 C 0.08 1.72 3.75 -3.83 -0.01 1.70 16 16 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 17 C -0.12 -1.99 6.00 -26.61 -0.16 -2.15 16 18 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16 19 C 0.06 1.22 4.77 -3.83 -0.02 1.20 16 20 H 0.04 0.78 6.21 -51.93 -0.32 0.46 16 21 H 0.04 0.93 7.13 -51.93 -0.37 0.56 16 22 H 0.04 0.78 7.10 -51.93 -0.37 0.42 16 23 H 0.26 6.43 8.32 -40.82 -0.34 6.09 16 24 H 0.11 2.77 5.23 -51.93 -0.27 2.50 16 25 H 0.08 1.60 5.83 -51.93 -0.30 1.29 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.08 1.79 7.72 -51.93 -0.40 1.39 16 29 H 0.04 1.07 6.09 -51.93 -0.32 0.76 16 30 H 0.09 2.19 4.95 -51.93 -0.26 1.93 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 1.15 5.88 -51.93 -0.31 0.84 16 38 H 0.03 0.70 7.45 -51.93 -0.39 0.31 16 LS Contribution 273.35 15.07 4.12 4.12 Total: -1.00 -24.99 273.35 -9.10 -34.09 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.23 Total: 3.24 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -1.41 Total: -22.62 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.56 Total: -34.42 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -24.99 -9.10 -34.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238634.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.810 kcal (2) G-P(sol) polarization free energy of solvation -24.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds