Wall clock time and date at job start Mon Mar 30 2020 02:41:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50701 * 109.47165 * 2 1
4 4 H 1.07998 * 119.99601 * 335.11985 * 3 2 1
5 5 C 1.37878 * 120.00116 * 155.11943 * 3 2 1
6 6 N 1.31519 * 119.99790 * 0.06483 * 5 3 2
7 7 Si 1.86793 * 120.00070 * 180.02562 * 5 3 2
8 8 H 1.48503 * 109.47167 * 359.97438 * 7 5 3
9 9 H 1.48499 * 109.47450 * 120.00060 * 7 5 3
10 10 H 1.48510 * 109.47042 * 239.99989 * 7 5 3
11 11 C 1.52993 * 109.47633 * 120.00530 * 2 1 3
12 12 C 1.53005 * 117.49743 * 6.09608 * 11 2 1
13 13 C 1.53007 * 117.49595 * 297.44210 * 11 2 1
14 14 N 1.46901 * 109.46859 * 240.00521 * 2 1 3
15 15 C 1.46846 * 111.00149 * 178.86563 * 14 2 1
16 16 C 1.53039 * 109.52393 * 174.15845 * 15 14 2
17 17 C 1.53110 * 109.27943 * 59.17812 * 16 15 14
18 18 C 1.53118 * 109.16396 * 302.34523 * 17 16 15
19 19 C 1.46847 * 111.00287 * 54.65083 * 14 2 1
20 20 H 1.08999 * 109.47541 * 59.99788 * 1 2 3
21 21 H 1.09005 * 109.46708 * 299.99213 * 1 2 3
22 22 H 1.08998 * 109.46983 * 180.02562 * 1 2 3
23 23 H 0.96997 * 120.00151 * 184.98291 * 6 5 3
24 24 H 1.08997 * 115.55615 * 151.76731 * 11 2 1
25 25 H 1.09001 * 117.49999 * 0.02562 * 12 11 2
26 26 H 1.08999 * 117.50071 * 145.02182 * 12 11 2
27 27 H 1.09005 * 117.49267 * 214.97537 * 13 11 2
28 28 H 1.08993 * 117.49703 * 359.96784 * 13 11 2
29 29 H 1.08994 * 109.46052 * 294.17644 * 15 14 2
30 30 H 1.09002 * 109.46018 * 54.14105 * 15 14 2
31 31 H 1.09005 * 109.50179 * 299.23346 * 16 15 14
32 32 H 1.09007 * 109.50209 * 179.12182 * 16 15 14
33 33 H 1.09003 * 109.52710 * 182.43902 * 17 16 15
34 34 H 1.09003 * 109.52373 * 62.24653 * 17 16 15
35 35 H 1.08999 * 109.49990 * 297.71733 * 18 17 16
36 36 H 1.08997 * 109.50915 * 177.59231 * 18 17 16
37 37 H 1.09002 * 109.46378 * 305.85832 * 19 14 2
38 38 H 1.09000 * 109.45661 * 65.82603 * 19 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 1 1.4123 2.2127 -0.3935
5 6 3.2834 1.7097 0.5024
6 7 4.0389 0.7451 0.9804
7 14 3.9058 3.4709 0.5030
8 1 2.8733 4.3610 -0.0862
9 1 4.1887 3.8955 1.8976
10 1 5.1505 3.5564 -0.3026
11 6 2.0401 -0.7213 1.2491
12 6 1.0033 -1.4042 2.1434
13 6 1.6859 -0.1156 2.6088
14 7 2.0196 -0.6924 -1.1995
15 6 3.4873 -0.6886 -1.2472
16 6 3.9629 -1.5398 -2.4267
17 6 3.3900 -0.9679 -3.7263
18 6 1.8620 -0.9380 -3.6317
19 6 1.4472 -0.1042 -2.4172
20 1 -0.3634 0.5138 -0.8899
21 1 -0.3633 0.5137 0.8901
22 1 -0.3633 -1.0277 0.0005
23 1 4.8878 0.9563 1.3994
24 1 3.0136 -1.2014 1.1502
25 1 -0.0421 -1.3399 1.8416
26 1 1.2949 -2.3333 2.6331
27 1 2.4265 -0.1975 3.4044
28 1 1.0900 0.7970 2.6133
29 1 3.8440 0.3340 -1.3701
30 1 3.8819 -1.1016 -0.3188
31 1 3.6183 -2.5658 -2.2975
32 1 5.0520 -1.5240 -2.4711
33 1 3.6907 -1.5963 -4.5647
34 1 3.7655 0.0445 -3.8756
35 1 1.4843 -1.9544 -3.5214
36 1 1.4499 -0.4922 -4.5370
37 1 0.3601 -0.0928 -2.3387
38 1 1.8135 0.9157 -2.5346
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260238634.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:14
Heat of formation + Delta-G solvation = 21.981393 kcal
Electronic energy + Delta-G solvation = -17026.062010 eV
Core-core repulsion = 14675.902039 eV
Total energy + Delta-G solvation = -2350.159970 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.38154 -37.80212 -34.68267 -33.56229 -31.44135 -30.04715 -27.15946 -25.30241
-23.78125 -22.89577 -22.54487 -20.32607 -19.86689 -17.89781 -17.28896 -16.55527
-15.64899 -15.34139 -15.03750 -14.82446 -14.49816 -14.22784 -13.79434 -13.56958
-13.10050 -12.96779 -12.66503 -12.57541 -12.51685 -12.16256 -11.88061 -11.76728
-11.58849 -11.34564 -11.23281 -10.84457 -10.55652 -10.51338 -10.48273 -10.04420
-8.57901 -7.84336 -6.10933 1.33180 1.39849 1.45743 2.43556 3.19792
3.57085 3.73886 4.14948 4.23299 4.30580 4.41060 4.60605 4.71284
4.76078 4.87303 4.92751 4.93637 4.97227 4.99387 5.02495 5.09678
5.21100 5.27371 5.30831 5.32670 5.39465 5.44205 5.56184 5.61109
5.70504 5.81432 5.84808 5.95906 6.12396 6.39140 6.75953 7.05421
7.09669 7.56448 8.99089
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.021318 B = 0.014935 C = 0.011238
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1313.140053 B = 1874.322218 C = 2491.021751
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.121 4.121
2 C 0.239 3.761
3 C -0.543 4.543
4 H 0.031 0.969
5 C 0.053 3.947
6 N -0.873 5.873
7 Si 0.920 3.080
8 H -0.281 1.281
9 H -0.283 1.283
10 H -0.288 1.288
11 C -0.056 4.056
12 C -0.208 4.208
13 C -0.163 4.163
14 N -0.529 5.529
15 C 0.086 3.914
16 C -0.119 4.119
17 C -0.112 4.112
18 C -0.107 4.107
19 C 0.059 3.941
20 H 0.040 0.960
21 H 0.041 0.959
22 H 0.052 0.948
23 H 0.254 0.746
24 H 0.088 0.912
25 H 0.093 0.907
26 H 0.083 0.917
27 H 0.064 0.936
28 H 0.066 0.934
29 H 0.006 0.994
30 H 0.067 0.933
31 H 0.062 0.938
32 H 0.055 0.945
33 H 0.076 0.924
34 H 0.040 0.960
35 H 0.068 0.932
36 H 0.072 0.928
37 H 0.064 0.936
38 H 0.002 0.998
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.498 -4.175 -4.557 6.666
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.152 3.848
3 C -0.582 4.582
4 H 0.049 0.951
5 C -0.150 4.150
6 N -0.510 5.510
7 Si 0.748 3.252
8 H -0.206 1.206
9 H -0.209 1.209
10 H -0.214 1.214
11 C -0.075 4.075
12 C -0.245 4.245
13 C -0.200 4.200
14 N -0.253 5.253
15 C -0.042 4.042
16 C -0.157 4.157
17 C -0.150 4.150
18 C -0.145 4.145
19 C -0.069 4.069
20 H 0.059 0.941
21 H 0.060 0.940
22 H 0.071 0.929
23 H 0.064 0.936
24 H 0.105 0.895
25 H 0.112 0.888
26 H 0.102 0.898
27 H 0.082 0.918
28 H 0.085 0.915
29 H 0.024 0.976
30 H 0.085 0.915
31 H 0.081 0.919
32 H 0.074 0.926
33 H 0.095 0.905
34 H 0.059 0.941
35 H 0.087 0.913
36 H 0.091 0.909
37 H 0.082 0.918
38 H 0.021 0.979
Dipole moment (debyes) X Y Z Total
from point charges -2.450 -4.704 -4.504 6.958
hybrid contribution 0.934 2.360 0.395 2.569
sum -1.517 -2.344 -4.108 4.967
Atomic orbital electron populations
1.21859 0.96672 0.99689 0.99643 1.18261 0.90522 0.89453 0.86599
1.21686 1.00344 0.94552 1.41664 0.95110 1.25210 0.96624 0.98154
0.94997 1.70209 1.11830 1.30641 1.38351 0.86112 0.77973 0.83715
0.77366 1.20638 1.20915 1.21415 1.21717 0.96103 0.99249 0.90451
1.23327 0.98985 0.95459 1.06702 1.22312 1.02548 0.95529 0.99647
1.62523 1.07145 1.53494 1.02127 1.21799 0.88397 0.96761 0.97232
1.21707 0.99026 0.99691 0.95270 1.21505 0.96034 1.00022 0.97445
1.21553 0.95680 1.00508 0.96761 1.21911 0.98721 0.95153 0.91143
0.94137 0.93991 0.92926 0.93587 0.89453 0.88845 0.89836 0.91782
0.91519 0.97558 0.91484 0.91889 0.92636 0.90516 0.94093 0.91318
0.90902 0.91760 0.97924
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.99 6.64 71.98 0.48 -4.51 16
2 C 0.24 11.09 0.53 2.78 0.00 11.09 16
3 C -0.54 -28.19 6.19 25.60 0.16 -28.03 16
4 H 0.03 1.68 7.81 -2.91 -0.02 1.66 16
5 C 0.05 2.74 3.71 84.65 0.31 3.05 16
6 N -0.87 -45.21 7.72 21.45 0.17 -45.04 16
7 Si 0.92 42.96 29.54 68.60 2.03 44.99 16
8 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
9 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16
10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16
11 C -0.06 -2.59 3.31 -10.79 -0.04 -2.62 16
12 C -0.21 -8.16 9.53 30.62 0.29 -7.87 16
13 C -0.16 -7.19 8.83 30.62 0.27 -6.92 16
14 N -0.53 -23.18 4.47 -851.06 -3.81 -26.99 16
15 C 0.09 3.89 3.75 86.33 0.32 4.22 16
16 C -0.12 -4.30 6.09 30.64 0.19 -4.11 16
17 C -0.11 -3.58 6.00 30.67 0.18 -3.40 16
18 C -0.11 -3.41 6.09 30.65 0.19 -3.22 16
19 C 0.06 2.36 4.77 86.33 0.41 2.77 16
20 H 0.04 1.61 6.21 -2.39 -0.01 1.60 16
21 H 0.04 1.71 7.13 -2.38 -0.02 1.70 16
22 H 0.05 1.99 7.10 -2.39 -0.02 1.98 16
23 H 0.25 12.93 8.32 -92.71 -0.77 12.16 16
24 H 0.09 4.45 5.23 -2.39 -0.01 4.44 16
25 H 0.09 3.44 5.83 -2.39 -0.01 3.43 16
26 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16
27 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16
28 H 0.07 3.07 7.72 -2.39 -0.02 3.05 16
29 H 0.01 0.32 6.09 -2.39 -0.01 0.30 16
30 H 0.07 3.32 4.95 -2.39 -0.01 3.31 16
31 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16
32 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16
33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16
35 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16
36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
37 H 0.06 2.44 5.88 -2.39 -0.01 2.43 16
38 H 0.00 0.11 7.45 -2.39 -0.02 0.09 16
Total: -1.00 -53.15 273.35 2.18 -50.97
By element:
Atomic # 1 Polarization: 14.60 SS G_CDS: 1.02 Total: 15.62 kcal
Atomic # 6 Polarization: -42.32 SS G_CDS: 2.77 Total: -39.55 kcal
Atomic # 7 Polarization: -68.39 SS G_CDS: -3.64 Total: -72.03 kcal
Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal
Total: -53.15 2.18 -50.97 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260238634.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.952 kcal
(2) G-P(sol) polarization free energy of solvation -53.149 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.803 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds