Wall clock time and date at job start Mon Mar 30 2020 02:41:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50700 * 109.47179 * 2 1
4 4 H 1.08001 * 119.99734 * 335.16004 * 3 2 1
5 5 C 1.37871 * 120.00079 * 155.16459 * 3 2 1
6 6 N 1.31511 * 120.00453 * 8.53078 * 5 3 2
7 7 Si 1.86803 * 119.99998 * 188.53075 * 5 3 2
8 8 H 1.48507 * 109.47165 * 359.97438 * 7 5 3
9 9 H 1.48501 * 109.47175 * 119.99698 * 7 5 3
10 10 H 1.48503 * 109.47225 * 239.99924 * 7 5 3
11 11 C 1.52996 * 109.47009 * 239.99728 * 2 1 3
12 12 C 1.53003 * 117.50102 * 122.61047 * 11 2 1
13 13 C 1.52992 * 117.50063 * 53.98670 * 11 2 1
14 14 N 1.46901 * 109.47188 * 119.99551 * 2 1 3
15 15 C 1.46845 * 110.99948 * 294.79145 * 14 2 1
16 16 C 1.53039 * 109.52090 * 185.83914 * 15 14 2
17 17 C 1.53117 * 109.27744 * 300.81460 * 16 15 14
18 18 C 1.53115 * 109.21316 * 57.62744 * 17 16 15
19 19 C 1.46846 * 110.99892 * 58.99702 * 14 2 1
20 20 H 1.09001 * 109.47071 * 300.00249 * 1 2 3
21 21 H 1.09004 * 109.47030 * 60.00491 * 1 2 3
22 22 H 1.09001 * 109.47087 * 180.02562 * 1 2 3
23 23 H 0.96999 * 120.00784 * 179.97438 * 6 5 3
24 24 H 1.09006 * 115.54734 * 268.31229 * 11 2 1
25 25 H 1.09006 * 117.49572 * 359.97438 * 12 11 2
26 26 H 1.08994 * 117.50123 * 145.01825 * 12 11 2
27 27 H 1.09001 * 117.50021 * 214.97849 * 13 11 2
28 28 H 1.09000 * 117.50330 * 359.97438 * 13 11 2
29 29 H 1.09001 * 109.46624 * 65.82341 * 15 14 2
30 30 H 1.09002 * 109.45226 * 305.84582 * 15 14 2
31 31 H 1.09005 * 109.49980 * 180.87674 * 16 15 14
32 32 H 1.08996 * 109.50861 * 60.76042 * 16 15 14
33 33 H 1.09002 * 109.52459 * 177.56101 * 17 16 15
34 34 H 1.08993 * 109.52903 * 297.68857 * 17 16 15
35 35 H 1.09004 * 109.50660 * 62.31126 * 18 17 16
36 36 H 1.08997 * 109.51013 * 182.43517 * 18 17 16
37 37 H 1.09007 * 109.46512 * 294.17983 * 19 14 2
38 38 H 1.09001 * 109.46085 * 54.15497 * 19 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 1 1.4121 2.2128 -0.3929
5 6 3.2837 1.7096 0.5015
6 7 4.1042 0.7337 0.8239
7 14 3.8138 3.4870 0.7230
8 1 2.7165 4.3887 0.2889
9 1 4.1234 3.7366 2.1538
10 1 5.0231 3.7490 -0.0981
11 6 2.0399 -0.7213 -1.2492
12 6 2.9650 0.0575 -2.1866
13 6 1.5231 -0.2367 -2.6052
14 7 2.0197 -0.6924 1.1995
15 6 1.6531 0.0416 2.4173
16 6 2.3009 -0.6270 3.6320
17 6 1.8224 -2.0785 3.7251
18 6 2.1721 -2.8087 2.4255
19 6 1.5293 -2.0758 1.2456
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5138 -0.8901
22 1 -0.3633 -1.0277 0.0005
23 1 4.9848 0.9368 1.1764
24 1 2.2239 -1.7894 -1.1331
25 1 3.2099 1.0840 -1.9134
26 1 3.7578 -0.4981 -2.6873
27 1 1.3674 -0.9860 -3.3814
28 1 0.8194 0.5957 -2.6075
29 1 0.5693 0.0342 2.5337
30 1 2.0030 1.0711 2.3399
31 1 2.0160 -0.0911 4.5374
32 1 3.3852 -0.6076 3.5230
33 1 2.3146 -2.5713 4.5635
34 1 0.7428 -2.0974 3.8743
35 1 3.2544 -2.8245 2.2968
36 1 1.7952 -3.8305 2.4693
37 1 0.4461 -2.0734 1.3673
38 1 1.7893 -2.5843 0.3172
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260238638.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:17
Heat of formation + Delta-G solvation = 38.505121 kcal
Electronic energy + Delta-G solvation = -17027.739566 eV
Core-core repulsion = 14678.296118 eV
Total energy + Delta-G solvation = -2349.443448 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.66793 -36.08082 -32.97684 -31.67832 -29.74887 -28.33089 -25.21513 -23.56989
-22.29926 -21.18641 -20.93785 -18.94725 -17.91973 -16.20074 -15.09104 -14.46774
-13.92943 -13.71865 -13.47793 -13.20649 -13.10131 -12.30986 -12.05933 -11.87371
-11.58331 -11.21415 -10.94740 -10.84166 -10.62740 -10.49331 -10.13574 -10.11755
-9.95370 -9.78836 -9.51322 -9.24053 -8.88604 -8.85356 -8.44370 -8.06143
-6.53012 -5.68026 -3.86908 3.33245 3.43622 3.47203 4.51730 5.05065
5.31271 5.49421 5.62321 5.67291 5.72374 6.05690 6.16278 6.30150
6.31931 6.34706 6.38564 6.46500 6.50155 6.55649 6.63187 6.64453
6.65263 6.75440 6.83441 6.91463 6.94770 7.04933 7.12772 7.23229
7.32027 7.42195 7.66665 7.77673 7.98272 8.34571 8.66916 8.92623
9.26393 9.73755 11.23103
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.022355 B = 0.015175 C = 0.010831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.214278 B = 1844.719951 C = 2584.599697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.265 3.735
3 C -0.534 4.534
4 H 0.053 0.947
5 C 0.091 3.909
6 N -0.811 5.811
7 Si 0.857 3.143
8 H -0.276 1.276
9 H -0.285 1.285
10 H -0.286 1.286
11 C -0.105 4.105
12 C -0.143 4.143
13 C -0.205 4.205
14 N -0.466 5.466
15 C 0.081 3.919
16 C -0.114 4.114
17 C -0.115 4.115
18 C -0.111 4.111
19 C 0.048 3.952
20 H 0.041 0.959
21 H 0.043 0.957
22 H 0.027 0.973
23 H 0.249 0.751
24 H 0.073 0.927
25 H 0.111 0.889
26 H 0.058 0.942
27 H 0.064 0.936
28 H 0.082 0.918
29 H -0.002 1.002
30 H 0.088 0.912
31 H 0.043 0.957
32 H 0.070 0.930
33 H 0.046 0.954
34 H 0.046 0.954
35 H 0.067 0.933
36 H 0.045 0.955
37 H 0.009 0.991
38 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.250 -4.070 1.673 5.471
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C 0.177 3.823
3 C -0.572 4.572
4 H 0.071 0.929
5 C -0.117 4.117
6 N -0.443 5.443
7 Si 0.685 3.315
8 H -0.201 1.201
9 H -0.211 1.211
10 H -0.213 1.213
11 C -0.124 4.124
12 C -0.180 4.180
13 C -0.243 4.243
14 N -0.189 5.189
15 C -0.047 4.047
16 C -0.152 4.152
17 C -0.152 4.152
18 C -0.149 4.149
19 C -0.081 4.081
20 H 0.060 0.940
21 H 0.062 0.938
22 H 0.046 0.954
23 H 0.060 0.940
24 H 0.091 0.909
25 H 0.130 0.870
26 H 0.076 0.924
27 H 0.083 0.917
28 H 0.100 0.900
29 H 0.016 0.984
30 H 0.106 0.894
31 H 0.062 0.938
32 H 0.089 0.911
33 H 0.065 0.935
34 H 0.065 0.935
35 H 0.086 0.914
36 H 0.064 0.936
37 H 0.027 0.973
38 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -2.522 -4.152 1.737 5.159
hybrid contribution -0.524 0.949 0.188 1.101
sum -3.046 -3.203 1.925 4.821
Atomic orbital electron populations
1.22474 1.01411 0.98408 1.00263 1.18126 0.86341 0.92695 0.85166
1.20727 1.01035 0.91315 1.44155 0.92909 1.24846 0.96450 0.94941
0.95496 1.70304 1.05769 1.29090 1.39134 0.87125 0.78712 0.87874
0.77831 1.20058 1.21126 1.21263 1.22301 1.02662 0.96619 0.90816
1.22757 0.89971 1.03179 1.02103 1.22809 0.99549 1.02953 0.98955
1.61887 1.57698 0.98098 1.01188 1.21757 0.94071 0.99759 0.89093
1.21578 1.01943 0.94348 0.97321 1.21525 0.99546 0.97050 0.97101
1.21521 1.01610 0.96810 0.94935 1.22123 0.95061 0.93628 0.97271
0.94026 0.93813 0.95369 0.94049 0.90944 0.87044 0.92388 0.91714
0.89968 0.98356 0.89420 0.93819 0.91103 0.93490 0.93505 0.91406
0.93626 0.97334 0.91986
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.57 7.53 37.16 0.28 -3.29 16
2 C 0.27 6.16 0.24 -132.76 -0.03 6.13 16
3 C -0.53 -13.55 5.13 -34.44 -0.18 -13.73 16
4 H 0.05 1.39 7.82 -52.49 -0.41 0.98 16
5 C 0.09 2.32 2.81 -17.82 -0.05 2.27 16
6 N -0.81 -21.26 11.55 55.43 0.64 -20.62 16
7 Si 0.86 20.15 29.55 -169.99 -5.02 15.12 16
8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
9 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16
10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
11 C -0.10 -2.36 5.15 -90.62 -0.47 -2.82 16
12 C -0.14 -3.21 9.54 -26.73 -0.26 -3.46 16
13 C -0.21 -4.16 9.57 -26.74 -0.26 -4.41 16
14 N -0.47 -10.57 2.80 -220.34 -0.62 -11.19 16
15 C 0.08 1.80 4.29 -3.83 -0.02 1.78 16
16 C -0.11 -2.20 6.09 -26.65 -0.16 -2.36 16
17 C -0.11 -1.95 6.00 -26.61 -0.16 -2.11 16
18 C -0.11 -1.97 6.10 -26.65 -0.16 -2.13 16
19 C 0.05 0.96 4.68 -3.83 -0.02 0.94 16
20 H 0.04 0.89 6.66 -51.93 -0.35 0.55 16
21 H 0.04 0.91 6.94 -51.93 -0.36 0.55 16
22 H 0.03 0.56 6.52 -51.93 -0.34 0.22 16
23 H 0.25 6.44 8.31 -40.82 -0.34 6.10 16
24 H 0.07 1.63 6.02 -51.93 -0.31 1.31 16
25 H 0.11 2.75 5.87 -51.93 -0.30 2.45 16
26 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16
27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
28 H 0.08 1.69 7.23 -51.93 -0.38 1.31 16
29 H 0.00 -0.03 6.73 -51.93 -0.35 -0.38 16
30 H 0.09 2.16 5.64 -51.93 -0.29 1.87 16
31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
32 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16
33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
37 H 0.01 0.17 6.62 -51.93 -0.34 -0.17 16
38 H 0.06 1.26 5.87 -51.93 -0.30 0.95 16
LS Contribution 277.71 15.07 4.19 4.19
Total: -1.00 -25.59 277.71 -8.54 -34.14
By element:
Atomic # 1 Polarization: 7.81 SS G_CDS: -6.25 Total: 1.55 kcal
Atomic # 6 Polarization: -21.71 SS G_CDS: -1.48 Total: -23.19 kcal
Atomic # 7 Polarization: -31.83 SS G_CDS: 0.02 Total: -31.81 kcal
Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.12 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -25.59 -8.54 -34.14 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260238638.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 72.644 kcal
(2) G-P(sol) polarization free energy of solvation -25.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.050 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.139 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.505 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds