Wall clock time and date at job start Mon Mar 30 2020 02:41:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.50700 * 109.47179 * 2 1
4 4 H 1.08001 * 119.99734 * 335.16004 * 3 2 1
5 5 C 1.37871 * 120.00079 * 155.16459 * 3 2 1
6 6 N 1.31511 * 120.00453 * 8.53078 * 5 3 2
7 7 Si 1.86803 * 119.99998 * 188.53075 * 5 3 2
8 8 H 1.48507 * 109.47165 * 359.97438 * 7 5 3
9 9 H 1.48501 * 109.47175 * 119.99698 * 7 5 3
10 10 H 1.48503 * 109.47225 * 239.99924 * 7 5 3
11 11 C 1.52996 * 109.47009 * 239.99728 * 2 1 3
12 12 C 1.53003 * 117.50102 * 122.61047 * 11 2 1
13 13 C 1.52992 * 117.50063 * 53.98670 * 11 2 1
14 14 N 1.46901 * 109.47188 * 119.99551 * 2 1 3
15 15 C 1.46845 * 110.99948 * 294.79145 * 14 2 1
16 16 C 1.53039 * 109.52090 * 185.83914 * 15 14 2
17 17 C 1.53117 * 109.27744 * 300.81460 * 16 15 14
18 18 C 1.53115 * 109.21316 * 57.62744 * 17 16 15
19 19 C 1.46846 * 110.99892 * 58.99702 * 14 2 1
20 20 H 1.09001 * 109.47071 * 300.00249 * 1 2 3
21 21 H 1.09004 * 109.47030 * 60.00491 * 1 2 3
22 22 H 1.09001 * 109.47087 * 180.02562 * 1 2 3
23 23 H 0.96999 * 120.00784 * 179.97438 * 6 5 3
24 24 H 1.09006 * 115.54734 * 268.31229 * 11 2 1
25 25 H 1.09006 * 117.49572 * 359.97438 * 12 11 2
26 26 H 1.08994 * 117.50123 * 145.01825 * 12 11 2
27 27 H 1.09001 * 117.50021 * 214.97849 * 13 11 2
28 28 H 1.09000 * 117.50330 * 359.97438 * 13 11 2
29 29 H 1.09001 * 109.46624 * 65.82341 * 15 14 2
30 30 H 1.09002 * 109.45226 * 305.84582 * 15 14 2
31 31 H 1.09005 * 109.49980 * 180.87674 * 16 15 14
32 32 H 1.08996 * 109.50861 * 60.76042 * 16 15 14
33 33 H 1.09002 * 109.52459 * 177.56101 * 17 16 15
34 34 H 1.08993 * 109.52903 * 297.68857 * 17 16 15
35 35 H 1.09004 * 109.50660 * 62.31126 * 18 17 16
36 36 H 1.08997 * 109.51013 * 182.43517 * 18 17 16
37 37 H 1.09007 * 109.46512 * 294.17983 * 19 14 2
38 38 H 1.09001 * 109.46085 * 54.15497 * 19 14 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 1 1.4121 2.2128 -0.3929
5 6 3.2837 1.7096 0.5015
6 7 4.1042 0.7337 0.8239
7 14 3.8138 3.4870 0.7230
8 1 2.7165 4.3887 0.2889
9 1 4.1234 3.7366 2.1538
10 1 5.0231 3.7490 -0.0981
11 6 2.0399 -0.7213 -1.2492
12 6 2.9650 0.0575 -2.1866
13 6 1.5231 -0.2367 -2.6052
14 7 2.0197 -0.6924 1.1995
15 6 1.6531 0.0416 2.4173
16 6 2.3009 -0.6270 3.6320
17 6 1.8224 -2.0785 3.7251
18 6 2.1721 -2.8087 2.4255
19 6 1.5293 -2.0758 1.2456
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5138 -0.8901
22 1 -0.3633 -1.0277 0.0005
23 1 4.9848 0.9368 1.1764
24 1 2.2239 -1.7894 -1.1331
25 1 3.2099 1.0840 -1.9134
26 1 3.7578 -0.4981 -2.6873
27 1 1.3674 -0.9860 -3.3814
28 1 0.8194 0.5957 -2.6075
29 1 0.5693 0.0342 2.5337
30 1 2.0030 1.0711 2.3399
31 1 2.0160 -0.0911 4.5374
32 1 3.3852 -0.6076 3.5230
33 1 2.3146 -2.5713 4.5635
34 1 0.7428 -2.0974 3.8743
35 1 3.2544 -2.8245 2.2968
36 1 1.7952 -3.8305 2.4693
37 1 0.4461 -2.0734 1.3673
38 1 1.7893 -2.5843 0.3172
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260238638.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:41:16
Heat of formation + Delta-G solvation = 26.235801 kcal
Electronic energy + Delta-G solvation = -17028.271603 eV
Core-core repulsion = 14678.296118 eV
Total energy + Delta-G solvation = -2349.975485 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.36161 -37.72233 -34.71482 -33.51087 -31.34202 -30.02423 -27.11997 -25.25738
-23.89101 -22.83185 -22.65549 -20.58510 -19.67474 -17.99717 -16.86703 -16.41505
-15.58419 -15.35084 -15.03749 -14.79659 -14.78992 -14.04219 -13.72465 -13.59862
-13.27320 -12.89385 -12.69553 -12.56856 -12.46574 -12.25560 -11.85830 -11.76106
-11.70242 -11.41869 -11.13460 -10.85424 -10.67174 -10.56458 -10.26272 -9.97836
-8.27540 -7.63357 -5.87495 1.40928 1.48883 1.53608 2.55773 3.35060
3.42196 3.77226 4.17094 4.20732 4.26986 4.38262 4.57458 4.64382
4.67466 4.74416 4.82193 4.87657 4.90139 4.93553 5.00610 5.04118
5.13405 5.17576 5.21734 5.30369 5.35884 5.42643 5.45381 5.58758
5.63982 5.72663 5.87658 5.94345 5.98369 6.46790 6.79349 7.16875
7.42246 7.75072 9.22972
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.022355 B = 0.015175 C = 0.010831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1252.214278 B = 1844.719951 C = 2584.599697
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.257 3.743
3 C -0.537 4.537
4 H 0.034 0.966
5 C 0.068 3.932
6 N -0.825 5.825
7 Si 0.898 3.102
8 H -0.280 1.280
9 H -0.286 1.286
10 H -0.289 1.289
11 C -0.117 4.117
12 C -0.155 4.155
13 C -0.178 4.178
14 N -0.483 5.483
15 C 0.085 3.915
16 C -0.110 4.110
17 C -0.108 4.108
18 C -0.107 4.107
19 C 0.047 3.953
20 H 0.033 0.967
21 H 0.044 0.956
22 H 0.041 0.959
23 H 0.245 0.755
24 H 0.074 0.926
25 H 0.084 0.916
26 H 0.067 0.933
27 H 0.094 0.906
28 H 0.078 0.922
29 H -0.002 1.002
30 H 0.054 0.946
31 H 0.060 0.940
32 H 0.048 0.952
33 H 0.071 0.929
34 H 0.058 0.942
35 H 0.050 0.950
36 H 0.075 0.925
37 H 0.013 0.987
38 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.016 -5.346 1.941 6.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.168 3.832
3 C -0.576 4.576
4 H 0.052 0.948
5 C -0.138 4.138
6 N -0.458 5.458
7 Si 0.726 3.274
8 H -0.205 1.205
9 H -0.213 1.213
10 H -0.216 1.216
11 C -0.136 4.136
12 C -0.192 4.192
13 C -0.215 4.215
14 N -0.206 5.206
15 C -0.043 4.043
16 C -0.148 4.148
17 C -0.146 4.146
18 C -0.144 4.144
19 C -0.081 4.081
20 H 0.052 0.948
21 H 0.063 0.937
22 H 0.060 0.940
23 H 0.055 0.945
24 H 0.092 0.908
25 H 0.102 0.898
26 H 0.085 0.915
27 H 0.112 0.888
28 H 0.097 0.903
29 H 0.016 0.984
30 H 0.072 0.928
31 H 0.079 0.921
32 H 0.066 0.934
33 H 0.089 0.911
34 H 0.076 0.924
35 H 0.069 0.931
36 H 0.094 0.906
37 H 0.031 0.969
38 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges -3.294 -5.423 2.005 6.654
hybrid contribution -0.303 1.375 0.078 1.410
sum -3.596 -4.048 2.083 5.801
Atomic orbital electron populations
1.22344 1.00257 0.99094 0.99898 1.18153 0.87286 0.91727 0.86005
1.20807 1.00793 0.92274 1.43732 0.94751 1.25124 0.96535 0.96696
0.95484 1.70384 1.05662 1.29879 1.39924 0.86488 0.77940 0.85553
0.77370 1.20513 1.21252 1.21563 1.22287 1.03472 0.96485 0.91383
1.22628 0.91582 1.01804 1.03203 1.22820 0.97557 1.02945 0.98221
1.61812 1.58440 0.99327 1.00998 1.21650 0.94041 0.98392 0.90247
1.21515 1.00244 0.96315 0.96687 1.21485 1.00389 0.95139 0.97557
1.21497 1.00412 0.98240 0.94287 1.22169 0.95408 0.92213 0.98297
0.94839 0.93700 0.94029 0.94545 0.90828 0.89785 0.91485 0.88772
0.90337 0.98384 0.92759 0.92149 0.93356 0.91052 0.92374 0.93094
0.90607 0.96907 0.92364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -6.56 7.53 71.98 0.54 -6.02 16
2 C 0.26 11.84 0.24 2.78 0.00 11.84 16
3 C -0.54 -27.59 5.13 25.60 0.13 -27.46 16
4 H 0.03 1.85 7.82 -2.91 -0.02 1.83 16
5 C 0.07 3.52 2.81 84.65 0.24 3.76 16
6 N -0.83 -43.82 11.55 21.44 0.25 -43.57 16
7 Si 0.90 42.10 29.55 68.60 2.03 44.12 16
8 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16
9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16
10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
11 C -0.12 -5.15 5.15 -10.80 -0.06 -5.20 16
12 C -0.16 -6.86 9.54 30.59 0.29 -6.57 16
13 C -0.18 -6.88 9.57 30.59 0.29 -6.59 16
14 N -0.48 -21.65 2.80 -851.04 -2.38 -24.03 16
15 C 0.09 3.73 4.29 86.33 0.37 4.10 16
16 C -0.11 -4.09 6.09 30.65 0.19 -3.91 16
17 C -0.11 -3.36 6.00 30.67 0.18 -3.18 16
18 C -0.11 -3.51 6.10 30.65 0.19 -3.33 16
19 C 0.05 1.82 4.68 86.33 0.40 2.23 16
20 H 0.03 1.41 6.66 -2.39 -0.02 1.40 16
21 H 0.04 1.82 6.94 -2.38 -0.02 1.80 16
22 H 0.04 1.59 6.52 -2.39 -0.02 1.57 16
23 H 0.24 12.83 8.31 -92.71 -0.77 12.06 16
24 H 0.07 3.21 6.02 -2.38 -0.01 3.19 16
25 H 0.08 4.19 5.87 -2.38 -0.01 4.18 16
26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16
27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16
28 H 0.08 3.10 7.23 -2.39 -0.02 3.08 16
29 H 0.00 -0.08 6.73 -2.39 -0.02 -0.09 16
30 H 0.05 2.71 5.64 -2.39 -0.01 2.70 16
31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16
32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16
33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16
34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16
36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16
37 H 0.01 0.49 6.62 -2.38 -0.02 0.47 16
38 H 0.06 2.26 5.87 -2.39 -0.01 2.24 16
Total: -1.00 -53.88 277.71 3.68 -50.19
By element:
Atomic # 1 Polarization: 12.59 SS G_CDS: 1.02 Total: 13.60 kcal
Atomic # 6 Polarization: -43.09 SS G_CDS: 2.77 Total: -40.32 kcal
Atomic # 7 Polarization: -65.47 SS G_CDS: -2.14 Total: -67.60 kcal
Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal
Total: -53.88 3.68 -50.19 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260238638.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.427 kcal
(2) G-P(sol) polarization free energy of solvation -53.876 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.552 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.192 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds