Wall clock time and date at job start Mon Mar 30 2020 02:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47179 * 2 1 4 4 H 1.08001 * 119.99734 * 335.16004 * 3 2 1 5 5 C 1.37871 * 120.00079 * 155.16459 * 3 2 1 6 6 N 1.31511 * 120.00453 * 8.53078 * 5 3 2 7 7 Si 1.86803 * 119.99998 * 188.53075 * 5 3 2 8 8 H 1.48507 * 109.47165 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.47175 * 119.99698 * 7 5 3 10 10 H 1.48503 * 109.47225 * 239.99924 * 7 5 3 11 11 C 1.52996 * 109.47009 * 239.99728 * 2 1 3 12 12 C 1.53003 * 117.50102 * 122.61047 * 11 2 1 13 13 C 1.52992 * 117.50063 * 53.98670 * 11 2 1 14 14 N 1.46901 * 109.47188 * 119.99551 * 2 1 3 15 15 C 1.46845 * 110.99948 * 294.79145 * 14 2 1 16 16 C 1.53039 * 109.52090 * 185.83914 * 15 14 2 17 17 C 1.53117 * 109.27744 * 300.81460 * 16 15 14 18 18 C 1.53115 * 109.21316 * 57.62744 * 17 16 15 19 19 C 1.46846 * 110.99892 * 58.99702 * 14 2 1 20 20 H 1.09001 * 109.47071 * 300.00249 * 1 2 3 21 21 H 1.09004 * 109.47030 * 60.00491 * 1 2 3 22 22 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 23 23 H 0.96999 * 120.00784 * 179.97438 * 6 5 3 24 24 H 1.09006 * 115.54734 * 268.31229 * 11 2 1 25 25 H 1.09006 * 117.49572 * 359.97438 * 12 11 2 26 26 H 1.08994 * 117.50123 * 145.01825 * 12 11 2 27 27 H 1.09001 * 117.50021 * 214.97849 * 13 11 2 28 28 H 1.09000 * 117.50330 * 359.97438 * 13 11 2 29 29 H 1.09001 * 109.46624 * 65.82341 * 15 14 2 30 30 H 1.09002 * 109.45226 * 305.84582 * 15 14 2 31 31 H 1.09005 * 109.49980 * 180.87674 * 16 15 14 32 32 H 1.08996 * 109.50861 * 60.76042 * 16 15 14 33 33 H 1.09002 * 109.52459 * 177.56101 * 17 16 15 34 34 H 1.08993 * 109.52903 * 297.68857 * 17 16 15 35 35 H 1.09004 * 109.50660 * 62.31126 * 18 17 16 36 36 H 1.08997 * 109.51013 * 182.43517 * 18 17 16 37 37 H 1.09007 * 109.46512 * 294.17983 * 19 14 2 38 38 H 1.09001 * 109.46085 * 54.15497 * 19 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.4121 2.2128 -0.3929 5 6 3.2837 1.7096 0.5015 6 7 4.1042 0.7337 0.8239 7 14 3.8138 3.4870 0.7230 8 1 2.7165 4.3887 0.2889 9 1 4.1234 3.7366 2.1538 10 1 5.0231 3.7490 -0.0981 11 6 2.0399 -0.7213 -1.2492 12 6 2.9650 0.0575 -2.1866 13 6 1.5231 -0.2367 -2.6052 14 7 2.0197 -0.6924 1.1995 15 6 1.6531 0.0416 2.4173 16 6 2.3009 -0.6270 3.6320 17 6 1.8224 -2.0785 3.7251 18 6 2.1721 -2.8087 2.4255 19 6 1.5293 -2.0758 1.2456 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 4.9848 0.9368 1.1764 24 1 2.2239 -1.7894 -1.1331 25 1 3.2099 1.0840 -1.9134 26 1 3.7578 -0.4981 -2.6873 27 1 1.3674 -0.9860 -3.3814 28 1 0.8194 0.5957 -2.6075 29 1 0.5693 0.0342 2.5337 30 1 2.0030 1.0711 2.3399 31 1 2.0160 -0.0911 4.5374 32 1 3.3852 -0.6076 3.5230 33 1 2.3146 -2.5713 4.5635 34 1 0.7428 -2.0974 3.8743 35 1 3.2544 -2.8245 2.2968 36 1 1.7952 -3.8305 2.4693 37 1 0.4461 -2.0734 1.3673 38 1 1.7893 -2.5843 0.3172 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260238638.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:16 Heat of formation + Delta-G solvation = 26.235801 kcal Electronic energy + Delta-G solvation = -17028.271603 eV Core-core repulsion = 14678.296118 eV Total energy + Delta-G solvation = -2349.975485 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36161 -37.72233 -34.71482 -33.51087 -31.34202 -30.02423 -27.11997 -25.25738 -23.89101 -22.83185 -22.65549 -20.58510 -19.67474 -17.99717 -16.86703 -16.41505 -15.58419 -15.35084 -15.03749 -14.79659 -14.78992 -14.04219 -13.72465 -13.59862 -13.27320 -12.89385 -12.69553 -12.56856 -12.46574 -12.25560 -11.85830 -11.76106 -11.70242 -11.41869 -11.13460 -10.85424 -10.67174 -10.56458 -10.26272 -9.97836 -8.27540 -7.63357 -5.87495 1.40928 1.48883 1.53608 2.55773 3.35060 3.42196 3.77226 4.17094 4.20732 4.26986 4.38262 4.57458 4.64382 4.67466 4.74416 4.82193 4.87657 4.90139 4.93553 5.00610 5.04118 5.13405 5.17576 5.21734 5.30369 5.35884 5.42643 5.45381 5.58758 5.63982 5.72663 5.87658 5.94345 5.98369 6.46790 6.79349 7.16875 7.42246 7.75072 9.22972 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022355 B = 0.015175 C = 0.010831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.214278 B = 1844.719951 C = 2584.599697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.257 3.743 3 C -0.537 4.537 4 H 0.034 0.966 5 C 0.068 3.932 6 N -0.825 5.825 7 Si 0.898 3.102 8 H -0.280 1.280 9 H -0.286 1.286 10 H -0.289 1.289 11 C -0.117 4.117 12 C -0.155 4.155 13 C -0.178 4.178 14 N -0.483 5.483 15 C 0.085 3.915 16 C -0.110 4.110 17 C -0.108 4.108 18 C -0.107 4.107 19 C 0.047 3.953 20 H 0.033 0.967 21 H 0.044 0.956 22 H 0.041 0.959 23 H 0.245 0.755 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.078 0.922 29 H -0.002 1.002 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.013 0.987 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -5.346 1.941 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.168 3.832 3 C -0.576 4.576 4 H 0.052 0.948 5 C -0.138 4.138 6 N -0.458 5.458 7 Si 0.726 3.274 8 H -0.205 1.205 9 H -0.213 1.213 10 H -0.216 1.216 11 C -0.136 4.136 12 C -0.192 4.192 13 C -0.215 4.215 14 N -0.206 5.206 15 C -0.043 4.043 16 C -0.148 4.148 17 C -0.146 4.146 18 C -0.144 4.144 19 C -0.081 4.081 20 H 0.052 0.948 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.112 0.888 28 H 0.097 0.903 29 H 0.016 0.984 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.031 0.969 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.294 -5.423 2.005 6.654 hybrid contribution -0.303 1.375 0.078 1.410 sum -3.596 -4.048 2.083 5.801 Atomic orbital electron populations 1.22344 1.00257 0.99094 0.99898 1.18153 0.87286 0.91727 0.86005 1.20807 1.00793 0.92274 1.43732 0.94751 1.25124 0.96535 0.96696 0.95484 1.70384 1.05662 1.29879 1.39924 0.86488 0.77940 0.85553 0.77370 1.20513 1.21252 1.21563 1.22287 1.03472 0.96485 0.91383 1.22628 0.91582 1.01804 1.03203 1.22820 0.97557 1.02945 0.98221 1.61812 1.58440 0.99327 1.00998 1.21650 0.94041 0.98392 0.90247 1.21515 1.00244 0.96315 0.96687 1.21485 1.00389 0.95139 0.97557 1.21497 1.00412 0.98240 0.94287 1.22169 0.95408 0.92213 0.98297 0.94839 0.93700 0.94029 0.94545 0.90828 0.89785 0.91485 0.88772 0.90337 0.98384 0.92759 0.92149 0.93356 0.91052 0.92374 0.93094 0.90607 0.96907 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.56 7.53 71.98 0.54 -6.02 16 2 C 0.26 11.84 0.24 2.78 0.00 11.84 16 3 C -0.54 -27.59 5.13 25.60 0.13 -27.46 16 4 H 0.03 1.85 7.82 -2.91 -0.02 1.83 16 5 C 0.07 3.52 2.81 84.65 0.24 3.76 16 6 N -0.83 -43.82 11.55 21.44 0.25 -43.57 16 7 Si 0.90 42.10 29.55 68.60 2.03 44.12 16 8 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 9 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 C -0.12 -5.15 5.15 -10.80 -0.06 -5.20 16 12 C -0.16 -6.86 9.54 30.59 0.29 -6.57 16 13 C -0.18 -6.88 9.57 30.59 0.29 -6.59 16 14 N -0.48 -21.65 2.80 -851.04 -2.38 -24.03 16 15 C 0.09 3.73 4.29 86.33 0.37 4.10 16 16 C -0.11 -4.09 6.09 30.65 0.19 -3.91 16 17 C -0.11 -3.36 6.00 30.67 0.18 -3.18 16 18 C -0.11 -3.51 6.10 30.65 0.19 -3.33 16 19 C 0.05 1.82 4.68 86.33 0.40 2.23 16 20 H 0.03 1.41 6.66 -2.39 -0.02 1.40 16 21 H 0.04 1.82 6.94 -2.38 -0.02 1.80 16 22 H 0.04 1.59 6.52 -2.39 -0.02 1.57 16 23 H 0.24 12.83 8.31 -92.71 -0.77 12.06 16 24 H 0.07 3.21 6.02 -2.38 -0.01 3.19 16 25 H 0.08 4.19 5.87 -2.38 -0.01 4.18 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 28 H 0.08 3.10 7.23 -2.39 -0.02 3.08 16 29 H 0.00 -0.08 6.73 -2.39 -0.02 -0.09 16 30 H 0.05 2.71 5.64 -2.39 -0.01 2.70 16 31 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.01 0.49 6.62 -2.38 -0.02 0.47 16 38 H 0.06 2.26 5.87 -2.39 -0.01 2.24 16 Total: -1.00 -53.88 277.71 3.68 -50.19 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.02 Total: 13.60 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 2.77 Total: -40.32 kcal Atomic # 7 Polarization: -65.47 SS G_CDS: -2.14 Total: -67.60 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -53.88 3.68 -50.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238638.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.427 kcal (2) G-P(sol) polarization free energy of solvation -53.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds