Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46998 * 2 1 4 4 H 1.07997 * 119.99915 * 240.62023 * 3 2 1 5 5 C 1.37880 * 119.99886 * 60.63020 * 3 2 1 6 6 N 1.31514 * 119.99525 * 328.67631 * 5 3 2 7 7 Si 1.86797 * 120.00306 * 148.67335 * 5 3 2 8 8 H 1.48507 * 109.46665 * 59.99955 * 7 5 3 9 9 H 1.48496 * 109.47335 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47213 * 300.00524 * 7 5 3 11 11 N 1.46906 * 109.46679 * 240.00566 * 2 1 3 12 12 C 1.46896 * 110.99967 * 297.86456 * 11 2 1 13 13 C 1.53001 * 117.50005 * 234.33574 * 12 11 2 14 14 C 1.52999 * 117.50003 * 165.67475 * 12 11 2 15 15 C 1.52991 * 109.47182 * 120.00741 * 2 1 3 16 16 C 1.54886 * 110.75808 * 46.60147 * 15 2 1 17 17 C 1.54471 * 104.10300 * 203.89636 * 16 15 2 18 18 C 1.53878 * 106.68164 * 23.34214 * 17 16 15 19 19 C 1.54265 * 106.59916 * 0.16082 * 18 17 16 20 20 H 1.08994 * 109.47270 * 293.30234 * 1 2 3 21 21 H 1.09000 * 109.47392 * 173.29517 * 1 2 3 22 22 H 1.09003 * 109.47196 * 53.29724 * 1 2 3 23 23 H 0.97001 * 119.99397 * 179.97438 * 6 5 3 24 24 H 1.00891 * 111.00095 * 61.82337 * 11 2 1 25 25 H 1.08998 * 115.55016 * 20.00180 * 12 11 2 26 26 H 1.09001 * 117.49846 * 359.97438 * 13 12 11 27 27 H 1.08997 * 117.50339 * 145.02306 * 13 12 11 28 28 H 1.09001 * 117.49903 * 214.98329 * 14 12 11 29 29 H 1.09006 * 117.49804 * 0.02562 * 14 12 11 30 30 H 1.09002 * 110.67433 * 169.84259 * 15 2 1 31 31 H 1.09002 * 110.49066 * 322.42257 * 16 15 2 32 32 H 1.09003 * 110.48934 * 85.06721 * 16 15 2 33 33 H 1.09005 * 109.85889 * 264.10513 * 17 16 15 34 34 H 1.08999 * 110.12601 * 142.72841 * 17 16 15 35 35 H 1.09002 * 110.02886 * 240.87375 * 18 17 16 36 36 H 1.08998 * 110.07065 * 119.47056 * 18 17 16 37 37 H 1.09004 * 110.48232 * 217.71360 * 19 18 17 38 38 H 1.08996 * 110.48975 * 95.07092 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6449 1.7770 -0.8150 5 6 1.7099 2.2660 1.0406 6 7 0.5639 2.1261 1.6704 7 14 2.9009 3.6096 1.5560 8 1 3.1399 4.5249 0.4112 9 1 2.3229 4.3755 2.6892 10 1 4.1866 2.9968 1.9765 11 7 2.0196 -0.6924 -1.1996 12 6 1.5907 -2.0974 -1.2084 13 6 2.6746 -3.1660 -1.3639 14 6 1.7213 -2.8677 -2.5238 15 6 2.0400 -0.7214 1.2491 16 6 1.2848 -2.0574 1.4582 17 6 1.4269 -2.3373 2.9707 18 6 1.6854 -0.9804 3.6487 19 6 1.6877 0.0792 2.5274 20 1 -0.3633 0.4065 0.9438 21 1 -0.3634 -1.0206 -0.1200 22 1 -0.3634 0.6142 -0.8239 23 1 0.3373 2.7204 2.4027 24 1 1.7207 -0.2179 -2.0383 25 1 0.7396 -2.3331 -0.5694 26 1 3.7059 -2.8265 -1.4601 27 1 2.5364 -4.1048 -0.8277 28 1 0.9563 -3.6104 -2.7502 29 1 2.1259 -2.3321 -3.3827 30 1 3.1147 -0.8912 1.1835 31 1 0.2342 -1.9480 1.1892 32 1 1.7481 -2.8530 0.8746 33 1 2.2680 -3.0083 3.1456 34 1 0.5091 -2.7795 3.3581 35 1 2.6519 -0.9929 4.1526 36 1 0.8936 -0.7636 4.3657 37 1 2.4446 0.8391 2.7223 38 1 0.7028 0.5360 2.4322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260469891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = 46.684611 kcal Electronic energy + Delta-G solvation = -16877.356745 eV Core-core repulsion = 14528.267987 eV Total energy + Delta-G solvation = -2349.088758 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.86451 -36.26477 -33.96946 -32.02880 -28.05822 -27.50408 -26.13869 -25.48174 -21.90190 -21.56702 -19.90157 -19.09291 -18.06620 -16.22943 -15.56659 -14.67657 -14.61392 -14.14861 -13.71246 -13.18894 -12.78847 -12.59563 -12.12744 -11.81117 -11.22165 -11.05367 -10.90874 -10.66723 -10.60740 -10.26528 -10.23536 -10.16080 -9.96275 -9.76978 -9.62026 -9.43062 -9.20836 -9.04803 -8.76584 -7.67068 -7.13233 -6.13739 -3.92075 3.31499 3.38578 3.45893 4.39504 4.43812 5.02237 5.08312 5.49477 5.57036 5.63322 5.68655 5.71162 6.03249 6.07108 6.24930 6.34006 6.42116 6.48504 6.60276 6.64158 6.66020 6.67710 6.76406 6.82403 6.90413 7.00022 7.11238 7.20565 7.33405 7.53839 7.67315 7.79235 7.94529 8.25548 8.29996 8.54765 8.72130 9.02674 9.58364 10.86429 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.012471 C = 0.009777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.956257 B = 2244.684428 C = 2863.048479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.244 3.756 3 C -0.516 4.516 4 H 0.061 0.939 5 C 0.082 3.918 6 N -0.854 5.854 7 Si 0.874 3.126 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.276 1.276 11 N -0.652 5.652 12 C 0.026 3.974 13 C -0.178 4.178 14 C -0.204 4.204 15 C -0.052 4.052 16 C -0.137 4.137 17 C -0.121 4.121 18 C -0.134 4.134 19 C -0.133 4.133 20 H 0.098 0.902 21 H 0.006 0.994 22 H 0.027 0.973 23 H 0.262 0.738 24 H 0.331 0.669 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -7.032 -0.648 7.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.154 3.846 3 C -0.553 4.553 4 H 0.079 0.921 5 C -0.120 4.120 6 N -0.491 5.491 7 Si 0.701 3.299 8 H -0.205 1.205 9 H -0.215 1.215 10 H -0.202 1.202 11 N -0.282 5.282 12 C -0.085 4.085 13 C -0.217 4.217 14 C -0.242 4.242 15 C -0.071 4.071 16 C -0.174 4.174 17 C -0.159 4.159 18 C -0.172 4.172 19 C -0.171 4.171 20 H 0.116 0.884 21 H 0.025 0.975 22 H 0.046 0.954 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.318 -7.053 -0.233 7.064 hybrid contribution -0.080 0.650 0.201 0.685 sum 0.238 -6.403 -0.032 6.407 Atomic orbital electron populations 1.22832 0.99693 0.95762 1.04198 1.18533 0.89533 0.91787 0.84698 1.20800 1.32295 0.94835 1.07389 0.92051 1.24602 0.94095 0.96761 0.96590 1.69848 1.18591 1.37228 1.23424 0.86953 0.83023 0.81657 0.78223 1.20471 1.21468 1.20173 1.60513 1.62475 0.98895 1.06292 1.22747 0.98113 0.90076 0.97557 1.23041 0.97044 0.99820 1.01773 1.23147 1.03338 1.04423 0.93333 1.22025 0.97506 0.91951 0.95657 1.23015 1.00841 0.99284 0.94229 1.22157 0.99381 0.97211 0.97143 1.22353 0.99064 0.96439 0.99350 1.23751 1.07007 0.95201 0.91117 0.88408 0.97505 0.95400 0.92796 0.84979 0.88026 0.88949 0.90029 0.89916 0.89280 0.93115 0.91760 0.92226 0.93537 0.93540 0.94197 0.93567 0.93795 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.82 7.05 37.16 0.26 -3.56 16 2 C 0.24 5.66 0.66 -132.76 -0.09 5.57 16 3 C -0.52 -13.47 8.10 -34.44 -0.28 -13.75 16 4 H 0.06 1.66 7.99 -52.49 -0.42 1.24 16 5 C 0.08 2.10 3.11 -17.82 -0.06 2.04 16 6 N -0.85 -21.75 7.82 55.43 0.43 -21.32 16 7 Si 0.87 20.55 29.03 -169.99 -4.93 15.62 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 N -0.65 -13.72 6.29 -94.21 -0.59 -14.31 16 12 C 0.03 0.47 3.69 -67.71 -0.25 0.22 16 13 C -0.18 -2.88 9.51 -26.69 -0.25 -3.13 16 14 C -0.20 -3.13 10.42 -26.69 -0.28 -3.41 16 15 C -0.05 -1.16 2.30 -88.63 -0.20 -1.37 16 16 C -0.14 -2.64 4.19 -24.96 -0.10 -2.74 16 17 C -0.12 -2.17 6.81 -25.50 -0.17 -2.35 16 18 C -0.13 -2.61 6.80 -25.61 -0.17 -2.79 16 19 C -0.13 -3.04 4.12 -25.07 -0.10 -3.14 16 20 H 0.10 2.43 4.76 -51.93 -0.25 2.18 16 21 H 0.01 0.13 4.78 -51.93 -0.25 -0.12 16 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 24 H 0.33 6.88 8.76 -39.30 -0.34 6.54 16 25 H 0.10 1.90 3.88 -51.93 -0.20 1.70 16 26 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 27 H 0.08 1.19 8.03 -51.93 -0.42 0.77 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.27 5.14 -51.93 -0.27 1.00 16 32 H 0.06 1.09 5.33 -51.93 -0.28 0.81 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 1.07 6.36 -51.93 -0.33 0.74 16 38 H 0.14 3.43 3.67 -55.37 -0.20 3.23 16 LS Contribution 271.50 15.07 4.09 4.09 Total: -1.00 -25.01 271.50 -8.60 -33.61 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.89 Total: 10.71 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: -1.70 Total: -28.40 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.16 Total: -35.64 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.93 Total: 15.62 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -25.01 -8.60 -33.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.293 kcal (2) G-P(sol) polarization free energy of solvation -25.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds