Wall clock time and date at job start Mon Mar 30 2020 02:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.46998 * 2 1 4 4 H 1.07997 * 119.99915 * 240.62023 * 3 2 1 5 5 C 1.37880 * 119.99886 * 60.63020 * 3 2 1 6 6 N 1.31514 * 119.99525 * 328.67631 * 5 3 2 7 7 Si 1.86797 * 120.00306 * 148.67335 * 5 3 2 8 8 H 1.48507 * 109.46665 * 59.99955 * 7 5 3 9 9 H 1.48496 * 109.47335 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47213 * 300.00524 * 7 5 3 11 11 N 1.46906 * 109.46679 * 240.00566 * 2 1 3 12 12 C 1.46896 * 110.99967 * 297.86456 * 11 2 1 13 13 C 1.53001 * 117.50005 * 234.33574 * 12 11 2 14 14 C 1.52999 * 117.50003 * 165.67475 * 12 11 2 15 15 C 1.52991 * 109.47182 * 120.00741 * 2 1 3 16 16 C 1.54886 * 110.75808 * 46.60147 * 15 2 1 17 17 C 1.54471 * 104.10300 * 203.89636 * 16 15 2 18 18 C 1.53878 * 106.68164 * 23.34214 * 17 16 15 19 19 C 1.54265 * 106.59916 * 0.16082 * 18 17 16 20 20 H 1.08994 * 109.47270 * 293.30234 * 1 2 3 21 21 H 1.09000 * 109.47392 * 173.29517 * 1 2 3 22 22 H 1.09003 * 109.47196 * 53.29724 * 1 2 3 23 23 H 0.97001 * 119.99397 * 179.97438 * 6 5 3 24 24 H 1.00891 * 111.00095 * 61.82337 * 11 2 1 25 25 H 1.08998 * 115.55016 * 20.00180 * 12 11 2 26 26 H 1.09001 * 117.49846 * 359.97438 * 13 12 11 27 27 H 1.08997 * 117.50339 * 145.02306 * 13 12 11 28 28 H 1.09001 * 117.49903 * 214.98329 * 14 12 11 29 29 H 1.09006 * 117.49804 * 0.02562 * 14 12 11 30 30 H 1.09002 * 110.67433 * 169.84259 * 15 2 1 31 31 H 1.09002 * 110.49066 * 322.42257 * 16 15 2 32 32 H 1.09003 * 110.48934 * 85.06721 * 16 15 2 33 33 H 1.09005 * 109.85889 * 264.10513 * 17 16 15 34 34 H 1.08999 * 110.12601 * 142.72841 * 17 16 15 35 35 H 1.09002 * 110.02886 * 240.87375 * 18 17 16 36 36 H 1.08998 * 110.07065 * 119.47056 * 18 17 16 37 37 H 1.09004 * 110.48232 * 217.71360 * 19 18 17 38 38 H 1.08996 * 110.48975 * 95.07092 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 2.6449 1.7770 -0.8150 5 6 1.7099 2.2660 1.0406 6 7 0.5639 2.1261 1.6704 7 14 2.9009 3.6096 1.5560 8 1 3.1399 4.5249 0.4112 9 1 2.3229 4.3755 2.6892 10 1 4.1866 2.9968 1.9765 11 7 2.0196 -0.6924 -1.1996 12 6 1.5907 -2.0974 -1.2084 13 6 2.6746 -3.1660 -1.3639 14 6 1.7213 -2.8677 -2.5238 15 6 2.0400 -0.7214 1.2491 16 6 1.2848 -2.0574 1.4582 17 6 1.4269 -2.3373 2.9707 18 6 1.6854 -0.9804 3.6487 19 6 1.6877 0.0792 2.5274 20 1 -0.3633 0.4065 0.9438 21 1 -0.3634 -1.0206 -0.1200 22 1 -0.3634 0.6142 -0.8239 23 1 0.3373 2.7204 2.4027 24 1 1.7207 -0.2179 -2.0383 25 1 0.7396 -2.3331 -0.5694 26 1 3.7059 -2.8265 -1.4601 27 1 2.5364 -4.1048 -0.8277 28 1 0.9563 -3.6104 -2.7502 29 1 2.1259 -2.3321 -3.3827 30 1 3.1147 -0.8912 1.1835 31 1 0.2342 -1.9480 1.1892 32 1 1.7481 -2.8530 0.8746 33 1 2.2680 -3.0083 3.1456 34 1 0.5091 -2.7795 3.3581 35 1 2.6519 -0.9929 4.1526 36 1 0.8936 -0.7636 4.3657 37 1 2.4446 0.8391 2.7223 38 1 0.7028 0.5360 2.4322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260469891.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:19 Heat of formation + Delta-G solvation = 33.142013 kcal Electronic energy + Delta-G solvation = -16877.943997 eV Core-core repulsion = 14528.267987 eV Total energy + Delta-G solvation = -2349.676010 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.51851 -37.71346 -35.67789 -33.83925 -29.69634 -29.15566 -27.88056 -27.41428 -23.23525 -23.14161 -21.49678 -20.58965 -19.84981 -18.09459 -17.15979 -16.52744 -16.15940 -15.73604 -15.34867 -14.80685 -14.49736 -14.17684 -13.82729 -13.45263 -13.03042 -12.77409 -12.44057 -12.35516 -12.26120 -12.06321 -11.96791 -11.80198 -11.70773 -11.29748 -11.21159 -11.00450 -10.88070 -10.73929 -10.49753 -9.59138 -8.76358 -8.11791 -5.93660 1.38834 1.45053 1.52101 2.45045 3.05222 3.13195 3.57333 4.07868 4.12990 4.15100 4.24409 4.31049 4.59132 4.72258 4.86684 4.90631 4.92022 5.00626 5.01159 5.03942 5.09084 5.14941 5.20201 5.25825 5.34272 5.36192 5.41940 5.45344 5.63739 5.75686 5.80977 5.93899 6.07069 6.40632 6.43869 6.72596 6.97742 7.10163 7.58268 8.86455 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025825 B = 0.012471 C = 0.009777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.956257 B = 2244.684428 C = 2863.048479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.243 3.757 3 C -0.543 4.543 4 H 0.040 0.960 5 C 0.059 3.941 6 N -0.858 5.858 7 Si 0.914 3.086 8 H -0.281 1.281 9 H -0.281 1.281 10 H -0.284 1.284 11 N -0.661 5.661 12 C -0.001 4.001 13 C -0.172 4.172 14 C -0.182 4.182 15 C -0.051 4.051 16 C -0.126 4.126 17 C -0.117 4.117 18 C -0.132 4.132 19 C -0.134 4.134 20 H 0.080 0.920 21 H 0.026 0.974 22 H 0.009 0.991 23 H 0.263 0.737 24 H 0.327 0.673 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.027 0.973 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.015 0.985 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.462 -8.929 -0.373 8.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.153 3.847 3 C -0.580 4.580 4 H 0.059 0.941 5 C -0.143 4.143 6 N -0.495 5.495 7 Si 0.741 3.259 8 H -0.206 1.206 9 H -0.207 1.207 10 H -0.210 1.210 11 N -0.290 5.290 12 C -0.111 4.111 13 C -0.210 4.210 14 C -0.220 4.220 15 C -0.070 4.070 16 C -0.163 4.163 17 C -0.154 4.154 18 C -0.170 4.170 19 C -0.172 4.172 20 H 0.098 0.902 21 H 0.045 0.955 22 H 0.028 0.972 23 H 0.073 0.927 24 H 0.145 0.855 25 H 0.117 0.883 26 H 0.099 0.901 27 H 0.121 0.879 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.039 -8.957 0.042 8.957 hybrid contribution 0.018 1.264 0.079 1.267 sum 0.057 -7.693 0.121 7.694 Atomic orbital electron populations 1.22638 0.99655 0.96373 1.02315 1.18424 0.89395 0.90759 0.86118 1.21009 1.32758 0.96859 1.07407 0.94136 1.24968 0.94753 0.98040 0.96553 1.69922 1.18772 1.37498 1.23294 0.86338 0.81451 0.80187 0.77941 1.20626 1.20684 1.21029 1.60449 1.62797 1.00476 1.05288 1.22751 0.99306 0.88688 1.00374 1.23082 0.96064 0.99582 1.02248 1.23222 1.03098 1.03483 0.92203 1.21897 0.96346 0.93726 0.95032 1.22899 1.00046 0.97675 0.95726 1.22144 1.01190 0.96472 0.95616 1.22312 0.99898 0.96332 0.98488 1.23570 1.04990 0.95691 0.92938 0.90194 0.95496 0.97216 0.92697 0.85478 0.88292 0.90063 0.87877 0.87426 0.89140 0.95454 0.92112 0.90848 0.91874 0.91412 0.93586 0.92571 0.96567 0.85699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.96 7.05 71.98 0.51 -6.45 16 2 C 0.24 11.39 0.66 2.78 0.00 11.39 16 3 C -0.54 -29.12 8.10 25.60 0.21 -28.91 16 4 H 0.04 2.28 7.99 -2.91 -0.02 2.26 16 5 C 0.06 3.09 3.11 84.66 0.26 3.35 16 6 N -0.86 -44.29 7.82 21.45 0.17 -44.12 16 7 Si 0.91 42.82 29.03 68.60 1.99 44.81 16 8 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 11 N -0.66 -27.80 6.29 -451.99 -2.84 -30.64 16 12 C 0.00 -0.03 3.69 44.92 0.17 0.14 16 13 C -0.17 -5.08 9.51 30.62 0.29 -4.79 16 14 C -0.18 -5.04 10.42 30.62 0.32 -4.72 16 15 C -0.05 -2.25 2.30 -9.51 -0.02 -2.27 16 16 C -0.13 -4.61 4.19 31.74 0.13 -4.48 16 17 C -0.12 -3.82 6.81 31.39 0.21 -3.60 16 18 C -0.13 -4.92 6.80 31.32 0.21 -4.70 16 19 C -0.13 -6.11 4.12 31.67 0.13 -5.98 16 20 H 0.08 3.98 4.76 -2.39 -0.01 3.97 16 21 H 0.03 1.10 4.78 -2.39 -0.01 1.09 16 22 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 23 H 0.26 13.07 8.31 -92.71 -0.77 12.30 16 24 H 0.33 13.75 8.76 -89.70 -0.79 12.97 16 25 H 0.10 3.47 3.88 -2.39 -0.01 3.46 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 27 H 0.10 2.61 8.03 -2.39 -0.02 2.59 16 28 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 2.26 5.14 -2.39 -0.01 2.25 16 32 H 0.07 2.47 5.33 -2.39 -0.01 2.46 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.02 0.78 6.36 -2.39 -0.02 0.77 16 38 H 0.13 6.16 3.67 -9.18 -0.03 6.13 16 Total: -1.00 -53.55 271.50 1.98 -51.57 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.24 Total: 29.40 kcal Atomic # 6 Polarization: -53.45 SS G_CDS: 2.42 Total: -51.02 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.68 Total: -74.76 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 1.99 Total: 44.81 kcal Total: -53.55 1.98 -51.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260469891.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.709 kcal (2) G-P(sol) polarization free energy of solvation -53.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds