Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 N 1.46900 * 109.46752 * 119.99654 * 2 1 3 5 5 C 1.47243 * 111.00098 * 57.07207 * 4 2 1 6 6 C 1.53086 * 108.47215 * 54.58155 * 5 4 2 7 7 C 1.50303 * 109.77255 * 48.77041 * 6 5 4 8 8 C 1.29825 * 122.89342 * 343.95447 * 7 6 5 9 9 C 1.50699 * 118.35877 * 180.14347 * 8 7 6 10 10 C 1.53006 * 109.46866 * 94.72904 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47494 * 119.99680 * 15 13 11 18 18 H 1.48505 * 109.47047 * 239.99860 * 15 13 11 19 19 C 1.46841 * 111.00085 * 179.97438 * 4 2 1 20 20 H 1.08995 * 109.47472 * 300.00413 * 1 2 3 21 21 H 1.09005 * 109.46791 * 60.00227 * 1 2 3 22 22 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47472 * 239.99587 * 2 1 3 24 24 H 1.09000 * 109.46722 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46876 * 299.99729 * 3 2 1 26 26 H 1.08998 * 109.46839 * 59.99728 * 3 2 1 27 27 H 1.08996 * 109.63685 * 174.27526 * 5 4 2 28 28 H 1.09001 * 109.63576 * 294.88800 * 5 4 2 29 29 H 1.08996 * 109.43487 * 169.04230 * 6 5 4 30 30 H 1.08999 * 109.43048 * 288.93967 * 6 5 4 31 31 H 1.07996 * 118.55263 * 163.69718 * 7 6 5 32 32 H 1.09000 * 109.47247 * 334.73072 * 9 8 7 33 33 H 1.09001 * 109.47358 * 214.72499 * 9 8 7 34 34 H 1.08993 * 109.46955 * 300.00219 * 10 9 8 35 35 H 1.09000 * 109.47050 * 60.00048 * 10 9 8 36 36 H 0.96992 * 120.00032 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.34385 * 167.29131 * 19 4 2 38 38 H 1.08999 * 109.20181 * 47.70015 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4909 -2.0649 1.2692 6 6 1.8368 -2.7849 -0.0368 7 6 3.2917 -2.5858 -0.3572 8 6 4.0190 -1.6700 0.2067 9 6 5.4674 -1.5588 -0.1940 10 6 5.6128 -0.5052 -1.2940 11 6 7.0614 -0.3936 -1.6943 12 1 7.8041 -1.0118 -1.2120 13 6 7.4388 0.4986 -2.6754 14 7 6.5344 1.2519 -3.2623 15 14 9.2342 0.6366 -3.1720 16 1 10.0446 -0.3130 -2.3677 17 1 9.3754 0.3106 -4.6139 18 1 9.7100 2.0222 -2.9288 19 6 3.4874 -0.7126 1.2332 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.9459 -2.5905 2.1088 28 1 0.4086 -2.0346 1.3952 29 1 1.6290 -3.8495 0.0700 30 1 1.2322 -2.3769 -0.8468 31 1 3.7535 -3.2358 -1.0855 32 1 5.8168 -2.5222 -0.5653 33 1 6.0623 -1.2653 0.6710 34 1 5.0180 -0.7986 -2.1589 35 1 5.2635 0.4582 -0.9228 36 1 6.7998 1.8793 -3.9527 37 1 3.8216 -1.0229 2.2232 38 1 3.8647 0.2880 1.0222 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260542506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = -1.245213 kcal Electronic energy + Delta-G solvation = -15921.706787 eV Core-core repulsion = 13570.539636 eV Total energy + Delta-G solvation = -2351.167152 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76240 -35.10913 -33.31358 -31.95091 -30.63697 -29.00498 -26.83061 -24.83014 -24.16439 -22.61341 -20.84275 -19.68078 -16.93733 -16.37387 -15.95946 -15.09384 -14.86182 -14.47591 -14.12728 -13.47564 -12.84568 -12.54777 -12.26582 -12.17481 -12.05887 -11.91945 -11.75280 -11.57280 -11.32061 -10.95809 -10.90860 -10.85697 -10.61637 -10.38296 -10.13810 -9.80594 -9.61431 -9.07417 -8.35365 -8.10908 -7.96908 -5.99857 -4.02532 2.74229 3.30570 3.38101 3.42384 4.17189 4.46091 5.05950 5.18036 5.20265 5.33213 5.35729 5.46176 5.46781 5.62916 5.74723 5.84917 5.90297 5.95943 6.02357 6.06526 6.08118 6.14830 6.20038 6.35506 6.46782 6.52628 6.60628 6.70538 6.94194 7.16984 7.29906 7.34836 7.54582 7.68498 7.85461 8.00466 8.42236 9.04656 9.61546 11.11075 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037910 B = 0.006771 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.406994 B = 4134.384544 C = 4518.570421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 C -0.147 4.147 4 N -0.524 5.524 5 C 0.050 3.950 6 C -0.120 4.120 7 C -0.188 4.188 8 C -0.126 4.126 9 C -0.082 4.082 10 C 0.033 3.967 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.080 3.920 20 H 0.059 0.941 21 H 0.056 0.944 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.102 0.898 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.014 0.986 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.081 0.919 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 -4.202 7.565 13.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.039 4.039 3 C -0.204 4.204 4 N -0.247 5.247 5 C -0.078 4.078 6 C -0.158 4.158 7 C -0.206 4.206 8 C -0.128 4.128 9 C -0.120 4.120 10 C -0.004 4.004 11 C -0.560 4.560 12 H 0.073 0.927 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.047 4.047 20 H 0.078 0.922 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.099 0.901 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.205 -3.779 7.860 14.199 hybrid contribution 1.370 -0.396 -1.261 1.904 sum -9.835 -4.175 6.598 12.558 Atomic orbital electron populations 1.21885 0.94995 1.01491 1.01793 1.21652 0.94801 0.95338 0.92131 1.21892 1.02209 0.94905 1.01423 1.62879 1.07855 1.15264 1.38689 1.22245 1.00089 0.88716 0.96745 1.20992 0.95200 1.00673 0.98968 1.21820 0.95026 1.01096 1.02642 1.21952 0.98128 0.95781 0.96932 1.20866 0.90033 1.01072 1.00028 1.19020 0.96571 0.92750 0.92044 1.21315 0.93444 1.21187 1.20013 0.92674 1.25019 0.97365 0.95703 0.96314 1.69980 1.32990 1.24278 1.26073 0.86559 0.85383 0.77869 0.78335 1.19746 1.21035 1.20986 1.21151 0.86613 0.99682 0.97297 0.92168 0.92493 0.92846 0.92886 0.91562 0.92400 0.92453 0.90975 0.90653 0.91471 0.91359 0.88037 0.92913 0.92711 0.96796 0.96630 0.93096 0.90114 0.88836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.74 37.16 0.32 -1.41 16 2 C 0.07 1.02 1.98 -67.71 -0.13 0.89 16 3 C -0.15 -2.23 9.00 37.16 0.33 -1.90 16 4 N -0.52 -7.73 4.89 -228.16 -1.12 -8.85 16 5 C 0.05 0.65 5.46 -3.59 -0.02 0.63 16 6 C -0.12 -1.65 5.48 -28.03 -0.15 -1.80 16 7 C -0.19 -3.19 8.84 -35.89 -0.32 -3.51 16 8 C -0.13 -2.30 4.69 -101.03 -0.47 -2.78 16 9 C -0.08 -1.74 5.19 -27.88 -0.14 -1.89 16 10 C 0.03 0.87 4.96 -27.88 -0.14 0.73 16 11 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.08 1.31 5.49 -5.30 -0.03 1.28 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.59 6.00 -51.93 -0.31 0.28 16 23 H 0.05 0.92 5.77 -51.93 -0.30 0.62 16 24 H 0.07 1.16 6.15 -51.93 -0.32 0.84 16 25 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 28 H 0.08 0.85 6.57 -51.93 -0.34 0.51 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.95 6.46 -51.93 -0.34 0.61 16 31 H 0.10 1.79 7.81 -52.49 -0.41 1.38 16 32 H 0.05 1.12 7.84 -51.93 -0.41 0.71 16 33 H 0.05 1.13 8.12 -51.93 -0.42 0.71 16 34 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.09 1.65 5.72 -51.93 -0.30 1.35 16 LS Contribution 293.14 15.07 4.42 4.42 Total: -1.00 -29.67 293.14 -8.63 -38.31 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.49 Total: -0.99 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: -1.16 Total: -23.42 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.38 Total: -35.10 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.67 -8.63 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.061 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds