Wall clock time and date at job start Mon Mar 30 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 N 1.46900 * 109.46752 * 119.99654 * 2 1 3 5 5 C 1.47243 * 111.00098 * 57.07207 * 4 2 1 6 6 C 1.53086 * 108.47215 * 54.58155 * 5 4 2 7 7 C 1.50303 * 109.77255 * 48.77041 * 6 5 4 8 8 C 1.29825 * 122.89342 * 343.95447 * 7 6 5 9 9 C 1.50699 * 118.35877 * 180.14347 * 8 7 6 10 10 C 1.53006 * 109.46866 * 94.72904 * 9 8 7 11 11 C 1.50699 * 109.46866 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99962 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00270 * 180.02562 * 11 10 9 14 14 N 1.31522 * 119.99834 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00496 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47141 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47494 * 119.99680 * 15 13 11 18 18 H 1.48505 * 109.47047 * 239.99860 * 15 13 11 19 19 C 1.46841 * 111.00085 * 179.97438 * 4 2 1 20 20 H 1.08995 * 109.47472 * 300.00413 * 1 2 3 21 21 H 1.09005 * 109.46791 * 60.00227 * 1 2 3 22 22 H 1.08995 * 109.47226 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47472 * 239.99587 * 2 1 3 24 24 H 1.09000 * 109.46722 * 179.97438 * 3 2 1 25 25 H 1.08996 * 109.46876 * 299.99729 * 3 2 1 26 26 H 1.08998 * 109.46839 * 59.99728 * 3 2 1 27 27 H 1.08996 * 109.63685 * 174.27526 * 5 4 2 28 28 H 1.09001 * 109.63576 * 294.88800 * 5 4 2 29 29 H 1.08996 * 109.43487 * 169.04230 * 6 5 4 30 30 H 1.08999 * 109.43048 * 288.93967 * 6 5 4 31 31 H 1.07996 * 118.55263 * 163.69718 * 7 6 5 32 32 H 1.09000 * 109.47247 * 334.73072 * 9 8 7 33 33 H 1.09001 * 109.47358 * 214.72499 * 9 8 7 34 34 H 1.08993 * 109.46955 * 300.00219 * 10 9 8 35 35 H 1.09000 * 109.47050 * 60.00048 * 10 9 8 36 36 H 0.96992 * 120.00032 * 180.02562 * 14 13 11 37 37 H 1.08996 * 109.34385 * 167.29131 * 19 4 2 38 38 H 1.08999 * 109.20181 * 47.70015 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 1.4909 -2.0649 1.2692 6 6 1.8368 -2.7849 -0.0368 7 6 3.2917 -2.5858 -0.3572 8 6 4.0190 -1.6700 0.2067 9 6 5.4674 -1.5588 -0.1940 10 6 5.6128 -0.5052 -1.2940 11 6 7.0614 -0.3936 -1.6943 12 1 7.8041 -1.0118 -1.2120 13 6 7.4388 0.4986 -2.6754 14 7 6.5344 1.2519 -3.2623 15 14 9.2342 0.6366 -3.1720 16 1 10.0446 -0.3130 -2.3677 17 1 9.3754 0.3106 -4.6139 18 1 9.7100 2.0222 -2.9288 19 6 3.4874 -0.7126 1.2332 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.9459 -2.5905 2.1088 28 1 0.4086 -2.0346 1.3952 29 1 1.6290 -3.8495 0.0700 30 1 1.2322 -2.3769 -0.8468 31 1 3.7535 -3.2358 -1.0855 32 1 5.8168 -2.5222 -0.5653 33 1 6.0623 -1.2653 0.6710 34 1 5.0180 -0.7986 -2.1589 35 1 5.2635 0.4582 -0.9228 36 1 6.7998 1.8793 -3.9527 37 1 3.8216 -1.0229 2.2232 38 1 3.8647 0.2880 1.0222 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260542506.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:57 Heat of formation + Delta-G solvation = -18.879775 kcal Electronic energy + Delta-G solvation = -15922.471479 eV Core-core repulsion = 13570.539636 eV Total energy + Delta-G solvation = -2351.931844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99844 -36.69656 -35.08625 -33.59606 -31.83014 -30.73959 -28.08095 -26.66440 -25.38549 -24.08072 -22.55774 -21.01289 -18.66638 -18.04284 -17.28287 -16.57417 -16.24623 -16.08208 -15.57749 -15.02821 -14.46361 -14.07483 -13.80853 -13.63161 -13.26523 -13.17984 -13.09383 -12.89864 -12.85230 -12.79870 -12.48026 -12.27099 -11.97334 -11.78580 -11.68396 -11.55081 -11.41304 -11.07178 -10.59406 -9.58158 -9.19923 -8.22697 -6.35117 1.31390 1.37520 1.37758 1.51318 2.38401 3.00715 3.09593 3.86845 3.91578 4.09565 4.16653 4.19929 4.30989 4.49050 4.55150 4.61546 4.67488 4.78965 4.80586 4.87094 4.87497 4.88905 4.98108 5.01313 5.10774 5.12032 5.21600 5.33325 5.41505 5.45678 5.61927 5.67546 5.80306 6.05307 6.19097 6.21222 6.24243 6.81477 7.34406 8.88665 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.037910 B = 0.006771 C = 0.006195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.406994 B = 4134.384544 C = 4518.570421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 C -0.144 4.144 4 N -0.520 5.520 5 C 0.050 3.950 6 C -0.116 4.116 7 C -0.178 4.178 8 C -0.146 4.146 9 C -0.071 4.071 10 C 0.045 3.955 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.931 5.931 15 Si 0.966 3.034 16 H -0.262 1.262 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.086 3.914 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.049 0.951 33 H 0.058 0.942 34 H -0.020 1.020 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.095 0.905 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 -5.043 8.447 15.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.039 4.039 3 C -0.202 4.202 4 N -0.242 5.242 5 C -0.077 4.077 6 C -0.154 4.154 7 C -0.197 4.197 8 C -0.148 4.148 9 C -0.109 4.109 10 C 0.008 3.992 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.790 3.210 16 H -0.186 1.186 17 H -0.203 1.203 18 H -0.201 1.201 19 C -0.042 4.042 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.041 0.959 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.077 0.923 34 H -0.001 1.001 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.113 0.887 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.926 -4.633 8.754 15.503 hybrid contribution 1.564 -0.152 -1.578 2.227 sum -10.362 -4.785 7.177 13.482 Atomic orbital electron populations 1.21829 0.92223 1.02692 1.02632 1.21651 0.96895 0.94378 0.91019 1.21861 1.00088 0.95976 1.02262 1.62931 1.06449 1.16646 1.38222 1.22396 1.01643 0.87289 0.96408 1.21041 0.92339 1.02504 0.99536 1.22097 0.96975 0.99711 1.00875 1.21844 0.96511 0.97489 0.98915 1.20634 0.92857 0.99011 0.98357 1.18810 0.95031 0.93060 0.92292 1.21741 0.94588 1.21590 1.20559 0.92286 1.25989 1.02483 0.95095 0.96135 1.70114 1.35497 1.24870 1.26586 0.85393 0.79231 0.78272 0.78122 1.18606 1.20310 1.20138 1.21053 0.87940 0.97968 0.97271 0.91140 0.91878 0.91439 0.95863 0.94799 0.92229 0.90878 0.90038 0.88024 0.88918 0.91194 0.89236 0.93206 0.92332 1.00141 0.99079 0.92761 0.88679 0.90956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.74 71.98 0.63 -2.31 16 2 C 0.07 2.00 1.98 44.92 0.09 2.09 16 3 C -0.14 -4.47 9.00 71.98 0.65 -3.83 16 4 N -0.52 -14.57 4.89 -875.76 -4.29 -18.86 16 5 C 0.05 1.15 5.46 86.27 0.47 1.62 16 6 C -0.12 -2.92 5.48 29.75 0.16 -2.76 16 7 C -0.18 -5.99 8.84 26.73 0.24 -5.76 16 8 C -0.15 -5.39 4.69 -15.47 -0.07 -5.46 16 9 C -0.07 -3.10 5.19 29.85 0.15 -2.94 16 10 C 0.05 2.48 4.96 29.85 0.15 2.63 16 11 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.05 5.46 84.65 0.46 0.52 16 14 N -0.93 -57.69 13.29 21.45 0.28 -57.40 16 15 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 16 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 17 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 C 0.09 2.80 5.49 85.38 0.47 3.27 16 20 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.06 1.28 8.14 -2.38 -0.02 1.27 16 22 H 0.07 1.27 6.00 -2.39 -0.01 1.25 16 23 H 0.02 0.82 5.77 -2.39 -0.01 0.80 16 24 H 0.03 1.25 6.15 -2.39 -0.01 1.24 16 25 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.08 1.76 8.08 -2.39 -0.02 1.74 16 28 H 0.10 1.85 6.57 -2.39 -0.02 1.84 16 29 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.07 1.79 6.46 -2.39 -0.02 1.78 16 31 H 0.09 3.19 7.81 -2.91 -0.02 3.16 16 32 H 0.05 2.16 7.84 -2.39 -0.02 2.15 16 33 H 0.06 2.47 8.12 -2.39 -0.02 2.46 16 34 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.07 2.67 5.72 -2.39 -0.01 2.66 16 Total: -1.00 -65.16 293.14 2.66 -62.50 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 1.00 Total: 11.49 kcal Atomic # 6 Polarization: -48.44 SS G_CDS: 3.63 Total: -44.81 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -4.00 Total: -76.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.16 2.66 -62.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260542506.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.623 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds