Wall clock time and date at job start Mon Mar 30 2020 02:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35035 * 1 3 3 C 1.40067 * 119.99900 * 2 1 4 4 H 1.08004 * 119.99925 * 154.68459 * 3 2 1 5 5 C 1.40308 * 120.00236 * 334.40760 * 3 2 1 6 6 N 1.30685 * 119.99870 * 333.00886 * 5 3 2 7 7 Si 1.86799 * 119.99991 * 153.01074 * 5 3 2 8 8 H 1.48500 * 109.47239 * 94.94462 * 7 5 3 9 9 H 1.48497 * 109.47155 * 214.94794 * 7 5 3 10 10 H 1.48499 * 109.47103 * 334.94662 * 7 5 3 11 11 C 1.50701 * 120.00024 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47368 * 94.99741 * 11 2 1 13 13 H 1.09005 * 110.26906 * 52.91155 * 12 11 2 14 14 C 1.54597 * 110.30695 * 290.71903 * 12 11 2 15 15 C 1.54943 * 102.92031 * 219.12155 * 14 12 11 16 16 N 1.48531 * 103.22300 * 37.41374 * 15 14 12 17 17 C 1.46896 * 111.00104 * 200.27503 * 16 15 14 18 18 C 1.52996 * 109.47379 * 178.16809 * 17 16 15 19 19 C 1.53000 * 109.47189 * 298.17271 * 17 16 15 20 20 C 1.47894 * 105.82450 * 320.79535 * 16 15 14 21 21 H 1.08001 * 120.00215 * 173.36057 * 1 2 3 22 22 H 1.07995 * 119.99920 * 353.36454 * 1 2 3 23 23 H 0.97001 * 120.00281 * 180.02562 * 6 5 3 24 24 H 1.08991 * 109.47363 * 215.00174 * 11 2 1 25 25 H 1.09004 * 109.46843 * 335.00199 * 11 2 1 26 26 H 1.08991 * 110.72810 * 337.47919 * 14 12 11 27 27 H 1.09001 * 110.72303 * 100.77056 * 14 12 11 28 28 H 1.09003 * 110.66850 * 278.98232 * 15 14 12 29 29 H 1.08997 * 110.80817 * 155.91811 * 15 14 12 30 30 H 1.09010 * 109.46960 * 58.17015 * 17 16 15 31 31 H 1.09003 * 109.47331 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.47282 * 300.00621 * 18 17 16 33 33 H 1.09003 * 109.47259 * 60.00298 * 18 17 16 34 34 H 1.08995 * 109.47497 * 55.94030 * 19 17 16 35 35 H 1.09004 * 109.47193 * 175.93758 * 19 17 16 36 36 H 1.09001 * 109.47148 * 295.93099 * 19 17 16 37 37 H 1.09005 * 109.91883 * 265.97363 * 20 16 15 38 38 H 1.08998 * 110.08662 * 144.77401 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0529 1.2579 0.4000 5 6 1.4524 2.3685 -0.5249 6 7 0.5354 2.2668 -1.4504 7 14 1.9667 4.0524 0.0992 8 1 3.0107 4.6142 -0.7950 9 1 0.7884 4.9561 0.1135 10 1 2.5098 3.9255 1.4755 11 6 2.1039 -1.3051 -0.0006 12 6 2.4677 -1.6834 -1.4378 13 1 2.9861 -0.8579 -1.9258 14 6 1.1964 -2.0651 -2.2303 15 6 1.6721 -3.2611 -3.0929 16 7 2.5934 -3.9903 -2.1842 17 6 3.5020 -4.8601 -2.9429 18 6 4.4634 -5.5580 -1.9789 19 6 2.6879 -5.9106 -3.7010 20 6 3.3453 -2.9486 -1.4516 21 1 -0.5400 -0.9290 -0.1081 22 1 -0.5400 0.9290 0.1081 23 1 0.1220 3.0656 -1.8136 24 1 3.0145 -1.1992 0.5889 25 1 1.4789 -2.0857 0.4334 26 1 0.3977 -2.3705 -1.5545 27 1 0.8732 -1.2381 -2.8626 28 1 2.2026 -2.9102 -3.9781 29 1 0.8305 -3.8933 -3.3759 30 1 4.0713 -4.2599 -3.6528 31 1 5.1374 -6.2038 -2.5418 32 1 5.0434 -4.8096 -1.4388 33 1 3.8942 -6.1582 -1.2691 34 1 1.9534 -5.4135 -4.3345 35 1 3.3552 -6.5102 -4.3201 36 1 2.1752 -6.5567 -2.9884 37 1 4.2864 -2.7422 -1.9614 38 1 3.5406 -3.2762 -0.4305 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577307.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:44 Heat of formation + Delta-G solvation = 0.497354 kcal Electronic energy + Delta-G solvation = -15706.061834 eV Core-core repulsion = 13354.970245 eV Total energy + Delta-G solvation = -2351.091588 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.03978 -35.59111 -33.85108 -31.57223 -29.10633 -28.67602 -26.85416 -25.01093 -24.18409 -21.70794 -19.94779 -19.30933 -18.79843 -16.01660 -15.72547 -15.10400 -14.65694 -14.22567 -13.49516 -13.31286 -13.10379 -12.79180 -12.31653 -12.13007 -12.08324 -11.87920 -11.57060 -11.21156 -11.09854 -10.78849 -10.73518 -10.68284 -10.58186 -10.42629 -9.92062 -9.73782 -9.44771 -9.05982 -8.71444 -8.10113 -7.17363 -6.46574 -3.96696 3.11383 3.24299 3.30845 4.15828 4.22087 4.24498 4.96552 5.02695 5.21496 5.32571 5.40869 5.51084 5.63689 5.70818 5.73126 5.83453 5.86254 5.93217 6.02930 6.12796 6.21495 6.27189 6.32898 6.47014 6.63069 6.81996 6.90294 6.97277 7.12790 7.16206 7.37635 7.41804 7.45305 7.73248 8.29505 8.48742 9.06395 9.37141 9.56424 10.56914 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050927 B = 0.005992 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.676731 B = 4671.796524 C = 4823.100414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.356 4.356 2 C 0.043 3.957 3 C -0.487 4.487 4 H 0.060 0.940 5 C 0.090 3.910 6 N -0.792 5.792 7 Si 0.880 3.120 8 H -0.276 1.276 9 H -0.280 1.280 10 H -0.264 1.264 11 C -0.066 4.066 12 C -0.080 4.080 13 H 0.075 0.925 14 C -0.105 4.105 15 C 0.034 3.966 16 N -0.513 5.513 17 C 0.066 3.934 18 C -0.144 4.144 19 C -0.143 4.143 20 C 0.041 3.959 21 H 0.042 0.958 22 H 0.071 0.929 23 H 0.271 0.729 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.035 0.965 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.187 -10.878 -4.110 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.397 4.397 2 C 0.041 3.959 3 C -0.517 4.517 4 H 0.078 0.922 5 C -0.127 4.127 6 N -0.419 5.419 7 Si 0.705 3.295 8 H -0.202 1.202 9 H -0.205 1.205 10 H -0.188 1.188 11 C -0.104 4.104 12 C -0.099 4.099 13 H 0.093 0.907 14 C -0.143 4.143 15 C -0.094 4.094 16 N -0.239 5.239 17 C -0.043 4.043 18 C -0.201 4.201 19 C -0.200 4.200 20 C -0.087 4.087 21 H 0.061 0.939 22 H 0.090 0.910 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.781 -11.121 -3.919 12.724 hybrid contribution 0.681 1.495 -0.451 1.704 sum 5.462 -9.626 -4.371 11.900 Atomic orbital electron populations 1.23034 0.94396 0.96861 1.25383 1.18321 0.93129 0.90852 0.93567 1.19013 1.01202 0.93360 1.38175 0.92178 1.25681 0.94038 1.00248 0.92694 1.69839 1.22627 1.30574 1.18816 0.86790 0.78740 0.83238 0.80690 1.20205 1.20494 1.18785 1.20660 0.98743 0.97265 0.93699 1.21838 0.95177 0.95158 0.97725 0.90693 1.22448 0.97923 0.95887 0.98012 1.23273 0.96085 0.95485 0.94553 1.64798 1.16850 1.18176 1.24027 1.21788 0.93358 0.94729 0.94447 1.21839 0.98469 1.00405 0.99401 1.21830 0.99911 0.98510 0.99786 1.23001 0.95360 0.91551 0.98780 0.93943 0.91009 0.91873 0.93576 0.93569 0.90882 0.90792 0.94500 0.90772 0.94562 0.92729 0.92610 0.91890 0.92613 0.92764 0.91962 0.94677 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.36 -9.82 12.48 29.59 0.37 -9.45 16 2 C 0.04 1.14 4.64 -105.07 -0.49 0.65 16 3 C -0.49 -13.52 8.97 -38.12 -0.34 -13.86 16 4 H 0.06 1.63 7.98 -52.48 -0.42 1.21 16 5 C 0.09 2.44 4.82 -17.26 -0.08 2.35 16 6 N -0.79 -22.11 11.74 55.57 0.65 -21.46 16 7 Si 0.88 20.07 29.64 -169.99 -5.04 15.03 16 8 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 11 C -0.07 -1.47 4.51 -27.88 -0.13 -1.59 16 12 C -0.08 -1.60 2.98 -89.26 -0.27 -1.86 16 13 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 14 C -0.10 -2.02 5.90 -24.87 -0.15 -2.17 16 15 C 0.03 0.54 5.49 -1.90 -0.01 0.53 16 16 N -0.51 -8.03 5.11 -222.51 -1.14 -9.16 16 17 C 0.07 0.85 2.35 -67.72 -0.16 0.69 16 18 C -0.14 -1.64 9.11 37.16 0.34 -1.31 16 19 C -0.14 -1.59 9.18 37.16 0.34 -1.25 16 20 C 0.04 0.68 5.08 -2.76 -0.01 0.67 16 21 H 0.04 1.11 7.50 -52.49 -0.39 0.71 16 22 H 0.07 2.13 6.69 -52.49 -0.35 1.78 16 23 H 0.27 6.97 8.29 -40.82 -0.34 6.63 16 24 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 25 H 0.05 1.00 7.89 -51.93 -0.41 0.59 16 26 H 0.07 1.49 7.12 -51.93 -0.37 1.12 16 27 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.04 0.57 7.97 -51.93 -0.41 0.16 16 29 H 0.07 1.09 7.56 -51.93 -0.39 0.70 16 30 H 0.04 0.49 8.00 -51.92 -0.42 0.07 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.66 7.10 -51.93 -0.37 0.29 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.63 6.78 -51.93 -0.35 0.28 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.03 0.56 7.55 -51.93 -0.39 0.16 16 38 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 LS Contribution 298.42 15.07 4.50 4.50 Total: -1.00 -28.33 298.42 -8.38 -36.71 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -6.77 Total: 0.99 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: -0.59 Total: -26.61 kcal Atomic # 7 Polarization: -30.14 SS G_CDS: -0.48 Total: -30.62 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.04 Total: 15.03 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.33 -8.38 -36.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577307.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.211 kcal (2) G-P(sol) polarization free energy of solvation -28.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds