Wall clock time and date at job start Mon Mar 30 2020 02:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35035 * 1 3 3 C 1.40067 * 119.99900 * 2 1 4 4 H 1.08004 * 119.99925 * 154.68459 * 3 2 1 5 5 C 1.40308 * 120.00236 * 334.40760 * 3 2 1 6 6 N 1.30685 * 119.99870 * 333.00886 * 5 3 2 7 7 Si 1.86799 * 119.99991 * 153.01074 * 5 3 2 8 8 H 1.48500 * 109.47239 * 94.94462 * 7 5 3 9 9 H 1.48497 * 109.47155 * 214.94794 * 7 5 3 10 10 H 1.48499 * 109.47103 * 334.94662 * 7 5 3 11 11 C 1.50701 * 120.00024 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47368 * 94.99741 * 11 2 1 13 13 H 1.09005 * 110.26906 * 52.91155 * 12 11 2 14 14 C 1.54597 * 110.30695 * 290.71903 * 12 11 2 15 15 C 1.54943 * 102.92031 * 219.12155 * 14 12 11 16 16 N 1.48531 * 103.22300 * 37.41374 * 15 14 12 17 17 C 1.46896 * 111.00104 * 200.27503 * 16 15 14 18 18 C 1.52996 * 109.47379 * 178.16809 * 17 16 15 19 19 C 1.53000 * 109.47189 * 298.17271 * 17 16 15 20 20 C 1.47894 * 105.82450 * 320.79535 * 16 15 14 21 21 H 1.08001 * 120.00215 * 173.36057 * 1 2 3 22 22 H 1.07995 * 119.99920 * 353.36454 * 1 2 3 23 23 H 0.97001 * 120.00281 * 180.02562 * 6 5 3 24 24 H 1.08991 * 109.47363 * 215.00174 * 11 2 1 25 25 H 1.09004 * 109.46843 * 335.00199 * 11 2 1 26 26 H 1.08991 * 110.72810 * 337.47919 * 14 12 11 27 27 H 1.09001 * 110.72303 * 100.77056 * 14 12 11 28 28 H 1.09003 * 110.66850 * 278.98232 * 15 14 12 29 29 H 1.08997 * 110.80817 * 155.91811 * 15 14 12 30 30 H 1.09010 * 109.46960 * 58.17015 * 17 16 15 31 31 H 1.09003 * 109.47331 * 179.97438 * 18 17 16 32 32 H 1.08999 * 109.47282 * 300.00621 * 18 17 16 33 33 H 1.09003 * 109.47259 * 60.00298 * 18 17 16 34 34 H 1.08995 * 109.47497 * 55.94030 * 19 17 16 35 35 H 1.09004 * 109.47193 * 175.93758 * 19 17 16 36 36 H 1.09001 * 109.47148 * 295.93099 * 19 17 16 37 37 H 1.09005 * 109.91883 * 265.97363 * 20 16 15 38 38 H 1.08998 * 110.08662 * 144.77401 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0529 1.2579 0.4000 5 6 1.4524 2.3685 -0.5249 6 7 0.5354 2.2668 -1.4504 7 14 1.9667 4.0524 0.0992 8 1 3.0107 4.6142 -0.7950 9 1 0.7884 4.9561 0.1135 10 1 2.5098 3.9255 1.4755 11 6 2.1039 -1.3051 -0.0006 12 6 2.4677 -1.6834 -1.4378 13 1 2.9861 -0.8579 -1.9258 14 6 1.1964 -2.0651 -2.2303 15 6 1.6721 -3.2611 -3.0929 16 7 2.5934 -3.9903 -2.1842 17 6 3.5020 -4.8601 -2.9429 18 6 4.4634 -5.5580 -1.9789 19 6 2.6879 -5.9106 -3.7010 20 6 3.3453 -2.9486 -1.4516 21 1 -0.5400 -0.9290 -0.1081 22 1 -0.5400 0.9290 0.1081 23 1 0.1220 3.0656 -1.8136 24 1 3.0145 -1.1992 0.5889 25 1 1.4789 -2.0857 0.4334 26 1 0.3977 -2.3705 -1.5545 27 1 0.8732 -1.2381 -2.8626 28 1 2.2026 -2.9102 -3.9781 29 1 0.8305 -3.8933 -3.3759 30 1 4.0713 -4.2599 -3.6528 31 1 5.1374 -6.2038 -2.5418 32 1 5.0434 -4.8096 -1.4388 33 1 3.8942 -6.1582 -1.2691 34 1 1.9534 -5.4135 -4.3345 35 1 3.3552 -6.5102 -4.3201 36 1 2.1752 -6.5567 -2.9884 37 1 4.2864 -2.7422 -1.9614 38 1 3.5406 -3.2762 -0.4305 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577307.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:43 Heat of formation + Delta-G solvation = -15.707919 kcal Electronic energy + Delta-G solvation = -15706.764547 eV Core-core repulsion = 13354.970245 eV Total energy + Delta-G solvation = -2351.794302 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.38872 -37.31303 -35.47481 -33.35327 -30.62305 -30.07807 -27.90255 -27.09832 -25.88828 -22.98371 -21.27612 -21.02673 -20.53527 -17.73301 -17.21652 -16.90054 -16.22931 -15.44903 -15.11063 -14.87782 -14.66600 -14.04168 -13.95847 -13.71070 -13.29777 -13.04790 -12.94192 -12.81984 -12.68236 -12.48766 -12.27375 -12.04440 -11.82781 -11.67325 -11.64101 -11.53125 -11.28817 -11.03946 -10.79026 -9.34093 -9.29090 -8.55499 -6.16328 1.28630 1.38271 1.51152 2.10034 2.28448 3.04308 3.27207 3.77491 3.85082 4.04473 4.16675 4.25737 4.36404 4.45967 4.54415 4.65119 4.70368 4.84672 4.89147 4.95308 4.97028 4.99810 5.04679 5.15567 5.20385 5.23087 5.29890 5.33535 5.42077 5.43110 5.47076 5.57824 5.99129 6.09860 6.24151 6.27624 6.91613 7.21772 7.45305 8.49609 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.050927 B = 0.005992 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.676731 B = 4671.796524 C = 4823.100414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.380 4.380 2 C 0.041 3.959 3 C -0.520 4.520 4 H 0.062 0.938 5 C 0.045 3.955 6 N -0.822 5.822 7 Si 0.957 3.043 8 H -0.263 1.263 9 H -0.273 1.273 10 H -0.261 1.261 11 C -0.061 4.061 12 C -0.078 4.078 13 H 0.050 0.950 14 C -0.103 4.103 15 C 0.046 3.954 16 N -0.519 5.519 17 C 0.060 3.940 18 C -0.140 4.140 19 C -0.139 4.139 20 C 0.053 3.947 21 H 0.047 0.953 22 H 0.043 0.957 23 H 0.279 0.721 24 H 0.054 0.946 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 -11.558 -4.457 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.420 4.420 2 C 0.039 3.961 3 C -0.550 4.550 4 H 0.080 0.920 5 C -0.170 4.170 6 N -0.448 5.448 7 Si 0.779 3.221 8 H -0.187 1.187 9 H -0.198 1.198 10 H -0.184 1.184 11 C -0.098 4.098 12 C -0.097 4.097 13 H 0.069 0.931 14 C -0.142 4.142 15 C -0.082 4.082 16 N -0.245 5.245 17 C -0.048 4.048 18 C -0.198 4.198 19 C -0.197 4.197 20 C -0.075 4.075 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.089 0.911 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.108 0.892 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.250 -11.818 -4.271 14.034 hybrid contribution 0.223 1.720 -0.382 1.776 sum 6.473 -10.098 -4.653 12.865 Atomic orbital electron populations 1.22804 0.94868 0.95700 1.28632 1.18729 0.93149 0.92742 0.91442 1.19362 1.01732 0.94699 1.39254 0.91971 1.26590 0.93841 1.04351 0.92190 1.69901 1.23315 1.32269 1.19291 0.85599 0.78726 0.77685 0.80076 1.18743 1.19790 1.18447 1.20603 0.98515 0.95178 0.95526 1.21721 0.95936 0.96170 0.95841 0.93125 1.22325 0.97307 0.96613 0.97906 1.23163 0.96808 0.94213 0.94021 1.64836 1.17425 1.17707 1.24509 1.21954 0.93436 0.94699 0.94704 1.21824 0.98327 1.00396 0.99232 1.21811 1.00041 0.98073 0.99731 1.22826 0.94966 0.90088 0.99637 0.93416 0.93877 0.91100 0.92705 0.93182 0.92362 0.93425 0.93828 0.89196 0.94624 0.90527 0.93163 0.92130 0.92920 0.90626 0.92088 0.93584 0.90156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.75 12.48 67.08 0.84 -20.92 16 2 C 0.04 2.23 4.64 -20.16 -0.09 2.14 16 3 C -0.52 -29.34 8.97 23.22 0.21 -29.13 16 4 H 0.06 3.39 7.98 -2.91 -0.02 3.37 16 5 C 0.05 2.47 4.82 85.37 0.41 2.88 16 6 N -0.82 -46.67 11.74 21.89 0.26 -46.42 16 7 Si 0.96 41.17 29.64 68.60 2.03 43.20 16 8 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 9 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 10 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 11 C -0.06 -2.72 4.51 29.85 0.13 -2.59 16 12 C -0.08 -3.12 2.98 -9.92 -0.03 -3.15 16 13 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 14 C -0.10 -4.07 5.90 31.80 0.19 -3.88 16 15 C 0.05 1.40 5.49 86.65 0.48 1.88 16 16 N -0.52 -15.30 5.11 -857.88 -4.38 -19.68 16 17 C 0.06 1.40 2.35 44.91 0.11 1.51 16 18 C -0.14 -2.81 9.11 71.98 0.66 -2.15 16 19 C -0.14 -2.70 9.18 71.98 0.66 -2.03 16 20 C 0.05 1.69 5.08 86.45 0.44 2.13 16 21 H 0.05 2.60 7.50 -2.91 -0.02 2.58 16 22 H 0.04 2.67 6.69 -2.91 -0.02 2.65 16 23 H 0.28 14.49 8.29 -92.71 -0.77 13.72 16 24 H 0.05 2.33 8.12 -2.39 -0.02 2.31 16 25 H 0.05 2.18 7.89 -2.38 -0.02 2.16 16 26 H 0.06 2.44 7.12 -2.39 -0.02 2.42 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.04 1.29 7.97 -2.39 -0.02 1.27 16 29 H 0.09 2.50 7.56 -2.39 -0.02 2.48 16 30 H 0.04 0.85 8.00 -2.38 -0.02 0.84 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.05 1.06 7.10 -2.39 -0.02 1.04 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.05 6.78 -2.39 -0.02 1.03 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.38 7.55 -2.38 -0.02 1.36 16 38 H 0.08 2.50 7.68 -2.39 -0.02 2.49 16 Total: -1.00 -61.33 298.42 2.89 -58.44 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: 0.99 Total: 17.77 kcal Atomic # 6 Polarization: -57.30 SS G_CDS: 3.99 Total: -53.31 kcal Atomic # 7 Polarization: -61.97 SS G_CDS: -4.12 Total: -66.10 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -61.33 2.89 -58.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577307.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.728 kcal (2) G-P(sol) polarization free energy of solvation -61.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds