Wall clock time and date at job start Mon Mar 30 2020 03:25:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 110.37001 * 2 1
4 4 C 1.54383 * 110.51035 * 237.58016 * 2 1 3
5 5 C 1.54261 * 105.06080 * 217.31863 * 4 2 1
6 6 C 1.54381 * 105.06278 * 359.97438 * 5 4 2
7 7 N 1.48563 * 110.41358 * 122.35146 * 2 1 3
8 8 C 1.46900 * 110.99978 * 277.93476 * 7 2 1
9 9 H 1.09005 * 110.01740 * 331.23424 * 8 7 2
10 10 C 1.54263 * 110.03532 * 209.78924 * 8 7 2
11 11 C 1.54891 * 104.19701 * 217.10646 * 10 8 7
12 12 C 1.54890 * 102.74837 * 37.94402 * 11 10 8
13 13 C 1.53879 * 110.03025 * 92.62104 * 8 7 2
14 14 H 1.09000 * 110.03311 * 238.56848 * 13 8 7
15 15 C 1.50698 * 110.03199 * 359.97438 * 13 8 7
16 16 H 1.07990 * 120.00449 * 2.81182 * 15 13 8
17 17 C 1.37884 * 119.99603 * 182.80651 * 15 13 8
18 18 N 1.31503 * 120.00126 * 0.02562 * 17 15 13
19 19 Si 1.86806 * 119.99615 * 180.02562 * 17 15 13
20 20 H 1.48496 * 109.47237 * 0.02562 * 19 17 15
21 21 H 1.48497 * 109.46981 * 120.00084 * 19 17 15
22 22 H 1.48492 * 109.47120 * 240.00069 * 19 17 15
23 23 H 1.09000 * 109.46845 * 299.32684 * 1 2 3
24 24 H 1.09002 * 109.47147 * 59.32630 * 1 2 3
25 25 H 1.08994 * 109.46963 * 179.32976 * 1 2 3
26 26 H 1.08997 * 110.32523 * 336.21503 * 4 2 1
27 27 H 1.08998 * 110.32263 * 98.32588 * 4 2 1
28 28 H 1.08996 * 110.32275 * 118.89892 * 5 4 2
29 29 H 1.09001 * 110.32423 * 241.00373 * 5 4 2
30 30 H 1.08994 * 110.41224 * 265.07535 * 6 5 4
31 31 H 1.09003 * 110.41046 * 142.62651 * 6 5 4
32 32 H 1.09005 * 110.48359 * 335.78541 * 10 8 7
33 33 H 1.08996 * 110.49178 * 98.42576 * 10 8 7
34 34 H 1.08992 * 110.75453 * 279.62666 * 11 10 8
35 35 H 1.08996 * 110.75714 * 156.25340 * 11 10 8
36 36 H 1.09000 * 110.48532 * 203.38218 * 12 11 10
37 37 H 1.09001 * 110.49173 * 80.73565 * 12 11 10
38 38 H 0.97007 * 119.99990 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9094 1.0218 0.0000
4 6 2.0709 -0.7752 -1.2206
5 6 3.3209 -1.5163 -0.7030
6 6 3.4306 -1.1260 0.7867
7 7 2.0482 -0.7451 1.1762
8 6 2.0544 0.1031 2.3756
9 1 2.1795 1.1483 2.0929
10 6 3.1928 -0.3291 3.3227
11 6 2.5939 -0.1558 4.7405
12 6 1.1267 -0.6143 4.5502
13 6 0.7406 -0.0782 3.1561
14 1 0.2287 0.8792 3.2529
15 6 -0.1473 -1.0694 2.4490
16 1 0.2015 -1.5656 1.5555
17 6 -1.4053 -1.3427 2.9428
18 7 -1.8304 -0.7382 4.0306
19 14 -2.5058 -2.5719 2.0667
20 1 -1.7984 -3.1094 0.8768
21 1 -2.8367 -3.6865 2.9905
22 1 -3.7569 -1.8975 1.6366
23 1 -0.3633 0.5033 0.8960
24 1 -0.3633 0.5243 -0.8839
25 1 -0.3633 -1.0275 -0.0120
26 1 1.3276 -1.4890 -1.5756
27 1 2.3422 -0.0838 -2.0183
28 1 3.1911 -2.5938 -0.8039
29 1 4.2071 -1.1898 -1.2472
30 1 4.1074 -0.2806 0.9093
31 1 3.7712 -1.9759 1.3782
32 1 3.4608 -1.3709 3.1464
33 1 4.0618 0.3162 3.1941
34 1 2.6352 0.8878 5.0523
35 1 3.1083 -0.7951 5.4580
36 1 0.4878 -0.1769 5.3174
37 1 1.0609 -1.7021 4.5723
38 1 -2.7156 -0.9303 4.3778
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260929331.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:25
Heat of formation + Delta-G solvation = 5.202161 kcal
Electronic energy + Delta-G solvation = -16784.402573 eV
Core-core repulsion = 14433.515000 eV
Total energy + Delta-G solvation = -2350.887573 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.15218 -36.07589 -32.50524 -30.87096 -30.54637 -27.80185 -25.75727 -25.18189
-23.34370 -21.11038 -19.79351 -18.94035 -18.49841 -16.20363 -15.34357 -14.96061
-14.48234 -14.14527 -13.69642 -13.30263 -12.62308 -12.35015 -12.12060 -11.89994
-11.60528 -11.14669 -11.05730 -10.88259 -10.62043 -10.45385 -10.28353 -10.17506
-10.14729 -9.99085 -9.80121 -9.68796 -9.32317 -8.98034 -8.48673 -8.13149
-7.27812 -5.76079 -3.67051 3.42373 3.51364 3.55659 4.63032 4.72243
5.13455 5.20491 5.41440 5.50787 5.69153 5.72821 5.73410 5.89641
5.94425 6.09434 6.12761 6.18572 6.28896 6.37927 6.42037 6.48017
6.52752 6.63201 6.63517 6.75087 6.86129 7.00640 7.06563 7.25566
7.48861 7.50388 7.68751 7.81548 8.02263 8.13448 8.30239 8.82616
9.42621 9.90713 11.36057
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.022088 B = 0.014010 C = 0.009692
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1267.377473 B = 1998.033888 C = 2888.347247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.067 3.933
3 H 0.034 0.966
4 C -0.122 4.122
5 C -0.123 4.123
6 C 0.027 3.973
7 N -0.466 5.466
8 C 0.076 3.924
9 H 0.024 0.976
10 C -0.121 4.121
11 C -0.131 4.131
12 C -0.091 4.091
13 C 0.053 3.947
14 H 0.024 0.976
15 C -0.477 4.477
16 H 0.098 0.902
17 C 0.048 3.952
18 N -0.904 5.904
19 Si 0.877 3.123
20 H -0.272 1.272
21 H -0.291 1.291
22 H -0.291 1.291
23 H 0.087 0.913
24 H 0.024 0.976
25 H 0.065 0.935
26 H 0.069 0.931
27 H 0.056 0.944
28 H 0.066 0.934
29 H 0.056 0.944
30 H 0.030 0.970
31 H 0.074 0.926
32 H 0.069 0.931
33 H 0.041 0.959
34 H 0.050 0.950
35 H 0.047 0.953
36 H 0.052 0.948
37 H 0.052 0.948
38 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.943 0.917 -6.046 10.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.041 4.041
3 H 0.052 0.948
4 C -0.160 4.160
5 C -0.161 4.161
6 C -0.101 4.101
7 N -0.190 5.190
8 C -0.032 4.032
9 H 0.042 0.958
10 C -0.158 4.158
11 C -0.169 4.169
12 C -0.130 4.130
13 C 0.034 3.966
14 H 0.042 0.958
15 C -0.516 4.516
16 H 0.115 0.885
17 C -0.150 4.150
18 N -0.546 5.546
19 Si 0.706 3.294
20 H -0.197 1.197
21 H -0.218 1.218
22 H -0.217 1.217
23 H 0.106 0.894
24 H 0.043 0.957
25 H 0.084 0.916
26 H 0.087 0.913
27 H 0.075 0.925
28 H 0.084 0.916
29 H 0.075 0.925
30 H 0.049 0.951
31 H 0.092 0.908
32 H 0.088 0.912
33 H 0.060 0.940
34 H 0.069 0.931
35 H 0.066 0.934
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 8.455 0.461 -5.811 10.270
hybrid contribution -0.176 0.086 -0.463 0.503
sum 8.279 0.548 -6.275 10.403
Atomic orbital electron populations
1.22069 0.92864 1.02873 1.00924 1.22600 0.97360 0.94245 0.89922
0.94757 1.22388 0.97346 0.98966 0.97277 1.22265 0.97370 1.00605
0.95896 1.23131 0.92483 0.99531 0.94997 1.65700 1.13939 1.37496
1.01855 1.22649 0.98188 0.92113 0.90273 0.95754 1.22566 0.96432
1.00767 0.96079 1.22577 0.99511 0.99535 0.95323 1.22293 0.90870
1.00121 0.99686 1.19303 0.89778 0.96964 0.90563 0.95810 1.21805
0.97145 1.21567 1.11049 0.88466 1.25002 0.98297 0.96439 0.95309
1.70004 1.18532 1.43655 1.22395 0.86767 0.80880 0.81798 0.79907
1.19718 1.21756 1.21725 0.89402 0.95679 0.91578 0.91268 0.92510
0.91563 0.92484 0.95127 0.90753 0.91225 0.93973 0.93137 0.93442
0.92904 0.92870 0.93857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.58 7.53 37.16 0.28 -2.30 16
2 C 0.07 1.22 2.85 -66.07 -0.19 1.03 16
3 H 0.03 0.62 7.61 -51.93 -0.40 0.22 16
4 C -0.12 -1.85 6.55 -25.35 -0.17 -2.02 16
5 C -0.12 -1.76 7.00 -25.35 -0.18 -1.94 16
6 C 0.03 0.44 5.13 -2.17 -0.01 0.42 16
7 N -0.47 -9.13 3.13 -212.88 -0.67 -9.80 16
8 C 0.08 1.57 2.79 -66.59 -0.19 1.38 16
9 H 0.02 0.50 7.47 -51.93 -0.39 0.12 16
10 C -0.12 -2.21 5.13 -25.07 -0.13 -2.33 16
11 C -0.13 -2.50 6.91 -24.74 -0.17 -2.67 16
12 C -0.09 -2.14 5.59 -25.07 -0.14 -2.28 16
13 C 0.05 1.29 2.24 -90.65 -0.20 1.08 16
14 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16
15 C -0.48 -12.45 4.93 -34.44 -0.17 -12.62 16
16 H 0.10 2.53 3.95 -52.49 -0.21 2.32 16
17 C 0.05 1.32 5.34 -17.82 -0.10 1.22 16
18 N -0.90 -26.27 12.64 55.43 0.70 -25.57 16
19 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16
20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16
21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16
22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
23 H 0.09 2.00 5.93 -51.93 -0.31 1.69 16
24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16
25 H 0.07 1.42 6.69 -51.93 -0.35 1.07 16
26 H 0.07 1.07 7.85 -51.93 -0.41 0.67 16
27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16
29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.03 0.48 7.67 -51.93 -0.40 0.08 16
31 H 0.07 1.20 7.01 -51.93 -0.36 0.83 16
32 H 0.07 1.27 6.41 -51.93 -0.33 0.94 16
33 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16
34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
36 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16
37 H 0.05 1.34 7.85 -51.93 -0.41 0.93 16
38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16
LS Contribution 278.55 15.07 4.20 4.20
Total: -1.00 -27.79 278.55 -8.64 -36.43
By element:
Atomic # 1 Polarization: 5.57 SS G_CDS: -6.49 Total: -0.92 kcal
Atomic # 6 Polarization: -19.66 SS G_CDS: -1.36 Total: -21.02 kcal
Atomic # 7 Polarization: -35.40 SS G_CDS: 0.03 Total: -35.37 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal
Total LS contribution 4.20 Total: 4.20 kcal
Total: -27.79 -8.64 -36.43 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260929331.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.630 kcal
(2) G-P(sol) polarization free energy of solvation -27.790 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.839 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.202 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds