Wall clock time and date at job start Mon Mar 30 2020 03:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.37001 * 2 1 4 4 C 1.54383 * 110.51035 * 237.58016 * 2 1 3 5 5 C 1.54261 * 105.06080 * 217.31863 * 4 2 1 6 6 C 1.54381 * 105.06278 * 359.97438 * 5 4 2 7 7 N 1.48563 * 110.41358 * 122.35146 * 2 1 3 8 8 C 1.46900 * 110.99978 * 277.93476 * 7 2 1 9 9 H 1.09005 * 110.01740 * 331.23424 * 8 7 2 10 10 C 1.54263 * 110.03532 * 209.78924 * 8 7 2 11 11 C 1.54891 * 104.19701 * 217.10646 * 10 8 7 12 12 C 1.54890 * 102.74837 * 37.94402 * 11 10 8 13 13 C 1.53879 * 110.03025 * 92.62104 * 8 7 2 14 14 H 1.09000 * 110.03311 * 238.56848 * 13 8 7 15 15 C 1.50698 * 110.03199 * 359.97438 * 13 8 7 16 16 H 1.07990 * 120.00449 * 2.81182 * 15 13 8 17 17 C 1.37884 * 119.99603 * 182.80651 * 15 13 8 18 18 N 1.31503 * 120.00126 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99615 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46981 * 120.00084 * 19 17 15 22 22 H 1.48492 * 109.47120 * 240.00069 * 19 17 15 23 23 H 1.09000 * 109.46845 * 299.32684 * 1 2 3 24 24 H 1.09002 * 109.47147 * 59.32630 * 1 2 3 25 25 H 1.08994 * 109.46963 * 179.32976 * 1 2 3 26 26 H 1.08997 * 110.32523 * 336.21503 * 4 2 1 27 27 H 1.08998 * 110.32263 * 98.32588 * 4 2 1 28 28 H 1.08996 * 110.32275 * 118.89892 * 5 4 2 29 29 H 1.09001 * 110.32423 * 241.00373 * 5 4 2 30 30 H 1.08994 * 110.41224 * 265.07535 * 6 5 4 31 31 H 1.09003 * 110.41046 * 142.62651 * 6 5 4 32 32 H 1.09005 * 110.48359 * 335.78541 * 10 8 7 33 33 H 1.08996 * 110.49178 * 98.42576 * 10 8 7 34 34 H 1.08992 * 110.75453 * 279.62666 * 11 10 8 35 35 H 1.08996 * 110.75714 * 156.25340 * 11 10 8 36 36 H 1.09000 * 110.48532 * 203.38218 * 12 11 10 37 37 H 1.09001 * 110.49173 * 80.73565 * 12 11 10 38 38 H 0.97007 * 119.99990 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7752 -1.2206 5 6 3.3209 -1.5163 -0.7030 6 6 3.4306 -1.1260 0.7867 7 7 2.0482 -0.7451 1.1762 8 6 2.0544 0.1031 2.3756 9 1 2.1795 1.1483 2.0929 10 6 3.1928 -0.3291 3.3227 11 6 2.5939 -0.1558 4.7405 12 6 1.1267 -0.6143 4.5502 13 6 0.7406 -0.0782 3.1561 14 1 0.2287 0.8792 3.2529 15 6 -0.1473 -1.0694 2.4490 16 1 0.2015 -1.5656 1.5555 17 6 -1.4053 -1.3427 2.9428 18 7 -1.8304 -0.7382 4.0306 19 14 -2.5058 -2.5719 2.0667 20 1 -1.7984 -3.1094 0.8768 21 1 -2.8367 -3.6865 2.9905 22 1 -3.7569 -1.8975 1.6366 23 1 -0.3633 0.5033 0.8960 24 1 -0.3633 0.5243 -0.8839 25 1 -0.3633 -1.0275 -0.0120 26 1 1.3276 -1.4890 -1.5756 27 1 2.3422 -0.0838 -2.0183 28 1 3.1911 -2.5938 -0.8039 29 1 4.2071 -1.1898 -1.2472 30 1 4.1074 -0.2806 0.9093 31 1 3.7712 -1.9759 1.3782 32 1 3.4608 -1.3709 3.1464 33 1 4.0618 0.3162 3.1941 34 1 2.6352 0.8878 5.0523 35 1 3.1083 -0.7951 5.4580 36 1 0.4878 -0.1769 5.3174 37 1 1.0609 -1.7021 4.5723 38 1 -2.7156 -0.9303 4.3778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260929331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:25 Heat of formation + Delta-G solvation = 5.202161 kcal Electronic energy + Delta-G solvation = -16784.402573 eV Core-core repulsion = 14433.515000 eV Total energy + Delta-G solvation = -2350.887573 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.15218 -36.07589 -32.50524 -30.87096 -30.54637 -27.80185 -25.75727 -25.18189 -23.34370 -21.11038 -19.79351 -18.94035 -18.49841 -16.20363 -15.34357 -14.96061 -14.48234 -14.14527 -13.69642 -13.30263 -12.62308 -12.35015 -12.12060 -11.89994 -11.60528 -11.14669 -11.05730 -10.88259 -10.62043 -10.45385 -10.28353 -10.17506 -10.14729 -9.99085 -9.80121 -9.68796 -9.32317 -8.98034 -8.48673 -8.13149 -7.27812 -5.76079 -3.67051 3.42373 3.51364 3.55659 4.63032 4.72243 5.13455 5.20491 5.41440 5.50787 5.69153 5.72821 5.73410 5.89641 5.94425 6.09434 6.12761 6.18572 6.28896 6.37927 6.42037 6.48017 6.52752 6.63201 6.63517 6.75087 6.86129 7.00640 7.06563 7.25566 7.48861 7.50388 7.68751 7.81548 8.02263 8.13448 8.30239 8.82616 9.42621 9.90713 11.36057 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.014010 C = 0.009692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.377473 B = 1998.033888 C = 2888.347247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.067 3.933 3 H 0.034 0.966 4 C -0.122 4.122 5 C -0.123 4.123 6 C 0.027 3.973 7 N -0.466 5.466 8 C 0.076 3.924 9 H 0.024 0.976 10 C -0.121 4.121 11 C -0.131 4.131 12 C -0.091 4.091 13 C 0.053 3.947 14 H 0.024 0.976 15 C -0.477 4.477 16 H 0.098 0.902 17 C 0.048 3.952 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.272 1.272 21 H -0.291 1.291 22 H -0.291 1.291 23 H 0.087 0.913 24 H 0.024 0.976 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.943 0.917 -6.046 10.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.041 4.041 3 H 0.052 0.948 4 C -0.160 4.160 5 C -0.161 4.161 6 C -0.101 4.101 7 N -0.190 5.190 8 C -0.032 4.032 9 H 0.042 0.958 10 C -0.158 4.158 11 C -0.169 4.169 12 C -0.130 4.130 13 C 0.034 3.966 14 H 0.042 0.958 15 C -0.516 4.516 16 H 0.115 0.885 17 C -0.150 4.150 18 N -0.546 5.546 19 Si 0.706 3.294 20 H -0.197 1.197 21 H -0.218 1.218 22 H -0.217 1.217 23 H 0.106 0.894 24 H 0.043 0.957 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 8.455 0.461 -5.811 10.270 hybrid contribution -0.176 0.086 -0.463 0.503 sum 8.279 0.548 -6.275 10.403 Atomic orbital electron populations 1.22069 0.92864 1.02873 1.00924 1.22600 0.97360 0.94245 0.89922 0.94757 1.22388 0.97346 0.98966 0.97277 1.22265 0.97370 1.00605 0.95896 1.23131 0.92483 0.99531 0.94997 1.65700 1.13939 1.37496 1.01855 1.22649 0.98188 0.92113 0.90273 0.95754 1.22566 0.96432 1.00767 0.96079 1.22577 0.99511 0.99535 0.95323 1.22293 0.90870 1.00121 0.99686 1.19303 0.89778 0.96964 0.90563 0.95810 1.21805 0.97145 1.21567 1.11049 0.88466 1.25002 0.98297 0.96439 0.95309 1.70004 1.18532 1.43655 1.22395 0.86767 0.80880 0.81798 0.79907 1.19718 1.21756 1.21725 0.89402 0.95679 0.91578 0.91268 0.92510 0.91563 0.92484 0.95127 0.90753 0.91225 0.93973 0.93137 0.93442 0.92904 0.92870 0.93857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 7.53 37.16 0.28 -2.30 16 2 C 0.07 1.22 2.85 -66.07 -0.19 1.03 16 3 H 0.03 0.62 7.61 -51.93 -0.40 0.22 16 4 C -0.12 -1.85 6.55 -25.35 -0.17 -2.02 16 5 C -0.12 -1.76 7.00 -25.35 -0.18 -1.94 16 6 C 0.03 0.44 5.13 -2.17 -0.01 0.42 16 7 N -0.47 -9.13 3.13 -212.88 -0.67 -9.80 16 8 C 0.08 1.57 2.79 -66.59 -0.19 1.38 16 9 H 0.02 0.50 7.47 -51.93 -0.39 0.12 16 10 C -0.12 -2.21 5.13 -25.07 -0.13 -2.33 16 11 C -0.13 -2.50 6.91 -24.74 -0.17 -2.67 16 12 C -0.09 -2.14 5.59 -25.07 -0.14 -2.28 16 13 C 0.05 1.29 2.24 -90.65 -0.20 1.08 16 14 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 15 C -0.48 -12.45 4.93 -34.44 -0.17 -12.62 16 16 H 0.10 2.53 3.95 -52.49 -0.21 2.32 16 17 C 0.05 1.32 5.34 -17.82 -0.10 1.22 16 18 N -0.90 -26.27 12.64 55.43 0.70 -25.57 16 19 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H 0.09 2.00 5.93 -51.93 -0.31 1.69 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 1.42 6.69 -51.93 -0.35 1.07 16 26 H 0.07 1.07 7.85 -51.93 -0.41 0.67 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.03 0.48 7.67 -51.93 -0.40 0.08 16 31 H 0.07 1.20 7.01 -51.93 -0.36 0.83 16 32 H 0.07 1.27 6.41 -51.93 -0.33 0.94 16 33 H 0.04 0.68 8.13 -51.93 -0.42 0.26 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 1.32 8.07 -51.93 -0.42 0.90 16 37 H 0.05 1.34 7.85 -51.93 -0.41 0.93 16 38 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 278.55 15.07 4.20 4.20 Total: -1.00 -27.79 278.55 -8.64 -36.43 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.49 Total: -0.92 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -1.36 Total: -21.02 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.03 Total: -35.37 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.79 -8.64 -36.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.630 kcal (2) G-P(sol) polarization free energy of solvation -27.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds