Wall clock time and date at job start Mon Mar 30 2020 03:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.37001 * 2 1 4 4 C 1.54383 * 110.51035 * 237.58016 * 2 1 3 5 5 C 1.54261 * 105.06080 * 217.31863 * 4 2 1 6 6 C 1.54381 * 105.06278 * 359.97438 * 5 4 2 7 7 N 1.48563 * 110.41358 * 122.35146 * 2 1 3 8 8 C 1.46900 * 110.99978 * 277.93476 * 7 2 1 9 9 H 1.09005 * 110.01740 * 331.23424 * 8 7 2 10 10 C 1.54263 * 110.03532 * 209.78924 * 8 7 2 11 11 C 1.54891 * 104.19701 * 217.10646 * 10 8 7 12 12 C 1.54890 * 102.74837 * 37.94402 * 11 10 8 13 13 C 1.53879 * 110.03025 * 92.62104 * 8 7 2 14 14 H 1.09000 * 110.03311 * 238.56848 * 13 8 7 15 15 C 1.50698 * 110.03199 * 359.97438 * 13 8 7 16 16 H 1.07990 * 120.00449 * 2.81182 * 15 13 8 17 17 C 1.37884 * 119.99603 * 182.80651 * 15 13 8 18 18 N 1.31503 * 120.00126 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 119.99615 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47237 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46981 * 120.00084 * 19 17 15 22 22 H 1.48492 * 109.47120 * 240.00069 * 19 17 15 23 23 H 1.09000 * 109.46845 * 299.32684 * 1 2 3 24 24 H 1.09002 * 109.47147 * 59.32630 * 1 2 3 25 25 H 1.08994 * 109.46963 * 179.32976 * 1 2 3 26 26 H 1.08997 * 110.32523 * 336.21503 * 4 2 1 27 27 H 1.08998 * 110.32263 * 98.32588 * 4 2 1 28 28 H 1.08996 * 110.32275 * 118.89892 * 5 4 2 29 29 H 1.09001 * 110.32423 * 241.00373 * 5 4 2 30 30 H 1.08994 * 110.41224 * 265.07535 * 6 5 4 31 31 H 1.09003 * 110.41046 * 142.62651 * 6 5 4 32 32 H 1.09005 * 110.48359 * 335.78541 * 10 8 7 33 33 H 1.08996 * 110.49178 * 98.42576 * 10 8 7 34 34 H 1.08992 * 110.75453 * 279.62666 * 11 10 8 35 35 H 1.08996 * 110.75714 * 156.25340 * 11 10 8 36 36 H 1.09000 * 110.48532 * 203.38218 * 12 11 10 37 37 H 1.09001 * 110.49173 * 80.73565 * 12 11 10 38 38 H 0.97007 * 119.99990 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7752 -1.2206 5 6 3.3209 -1.5163 -0.7030 6 6 3.4306 -1.1260 0.7867 7 7 2.0482 -0.7451 1.1762 8 6 2.0544 0.1031 2.3756 9 1 2.1795 1.1483 2.0929 10 6 3.1928 -0.3291 3.3227 11 6 2.5939 -0.1558 4.7405 12 6 1.1267 -0.6143 4.5502 13 6 0.7406 -0.0782 3.1561 14 1 0.2287 0.8792 3.2529 15 6 -0.1473 -1.0694 2.4490 16 1 0.2015 -1.5656 1.5555 17 6 -1.4053 -1.3427 2.9428 18 7 -1.8304 -0.7382 4.0306 19 14 -2.5058 -2.5719 2.0667 20 1 -1.7984 -3.1094 0.8768 21 1 -2.8367 -3.6865 2.9905 22 1 -3.7569 -1.8975 1.6366 23 1 -0.3633 0.5033 0.8960 24 1 -0.3633 0.5243 -0.8839 25 1 -0.3633 -1.0275 -0.0120 26 1 1.3276 -1.4890 -1.5756 27 1 2.3422 -0.0838 -2.0183 28 1 3.1911 -2.5938 -0.8039 29 1 4.2071 -1.1898 -1.2472 30 1 4.1074 -0.2806 0.9093 31 1 3.7712 -1.9759 1.3782 32 1 3.4608 -1.3709 3.1464 33 1 4.0618 0.3162 3.1941 34 1 2.6352 0.8878 5.0523 35 1 3.1083 -0.7951 5.4580 36 1 0.4878 -0.1769 5.3174 37 1 1.0609 -1.7021 4.5723 38 1 -2.7156 -0.9303 4.3778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260929331.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:24 Heat of formation + Delta-G solvation = -9.953870 kcal Electronic energy + Delta-G solvation = -16785.059788 eV Core-core repulsion = 14433.515000 eV Total energy + Delta-G solvation = -2351.544787 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.64675 -37.65105 -34.48696 -32.31444 -32.07546 -29.61965 -27.34685 -26.72911 -25.20296 -22.46291 -21.32060 -20.54644 -20.13308 -18.01798 -16.99263 -16.62184 -16.12433 -15.77451 -15.25596 -14.80337 -14.35789 -13.87496 -13.67807 -13.49136 -13.25245 -12.84133 -12.67808 -12.62725 -12.27163 -12.10700 -11.95468 -11.72080 -11.61114 -11.49547 -11.35681 -11.17989 -11.05288 -10.86837 -10.47608 -10.26058 -8.81311 -7.89767 -5.83324 1.41239 1.45478 1.55277 2.57620 3.30585 3.42606 3.83750 3.92289 4.10470 4.20910 4.24534 4.36738 4.41752 4.66232 4.71020 4.76913 4.88009 4.93556 4.98987 5.00777 5.07430 5.09867 5.16332 5.16438 5.25449 5.34027 5.41218 5.46066 5.48475 5.65582 5.81987 5.82959 6.01516 6.13124 6.42146 6.46158 6.83566 7.30800 7.76650 9.22642 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.022088 B = 0.014010 C = 0.009692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.377473 B = 1998.033888 C = 2888.347247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.063 3.937 3 H 0.039 0.961 4 C -0.116 4.116 5 C -0.117 4.117 6 C 0.026 3.974 7 N -0.494 5.494 8 C 0.082 3.918 9 H 0.023 0.977 10 C -0.110 4.110 11 C -0.121 4.121 12 C -0.087 4.087 13 C 0.044 3.956 14 H -0.017 1.017 15 C -0.460 4.460 16 H 0.101 0.899 17 C -0.007 4.007 18 N -0.941 5.941 19 Si 0.929 3.071 20 H -0.262 1.262 21 H -0.295 1.295 22 H -0.293 1.293 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.023 0.977 37 H 0.029 0.971 38 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.442 0.515 -7.801 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.045 4.045 3 H 0.056 0.944 4 C -0.154 4.154 5 C -0.155 4.155 6 C -0.101 4.101 7 N -0.218 5.218 8 C -0.027 4.027 9 H 0.041 0.959 10 C -0.148 4.148 11 C -0.159 4.159 12 C -0.125 4.125 13 C 0.026 3.974 14 H 0.002 0.998 15 C -0.499 4.499 16 H 0.119 0.881 17 C -0.201 4.201 18 N -0.585 5.585 19 Si 0.758 3.242 20 H -0.186 1.186 21 H -0.222 1.222 22 H -0.219 1.219 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.971 0.048 -7.590 13.341 hybrid contribution -0.965 0.257 0.062 1.000 sum 10.006 0.305 -7.528 12.525 Atomic orbital electron populations 1.21889 0.94775 1.01182 1.00162 1.22632 0.95827 0.95012 0.91048 0.94352 1.22353 0.97598 0.99075 0.96403 1.22264 0.97964 1.00685 0.94565 1.23193 0.90513 0.99995 0.96426 1.65516 1.16760 1.37554 1.01947 1.22425 0.96630 0.92510 0.91115 0.95942 1.22510 0.96381 1.01628 0.94246 1.22504 0.96042 1.00487 0.96872 1.22080 0.93942 0.98233 0.98291 1.19289 0.91730 0.94488 0.91943 0.99839 1.22092 0.96945 1.20454 1.10374 0.88104 1.25648 0.99949 0.98346 0.96132 1.70146 1.18625 1.45624 1.24127 0.85932 0.79366 0.79791 0.79154 1.18558 1.22239 1.21946 0.93286 0.93239 0.93623 0.91842 0.89965 0.91351 0.89555 0.93792 0.90577 0.90874 0.90783 0.92065 0.91182 0.95841 0.95192 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 7.53 71.98 0.54 -4.29 16 2 C 0.06 2.18 2.85 45.06 0.13 2.31 16 3 H 0.04 1.30 7.61 -2.39 -0.02 1.28 16 4 C -0.12 -3.13 6.55 31.49 0.21 -2.93 16 5 C -0.12 -2.84 7.00 31.49 0.22 -2.62 16 6 C 0.03 0.76 5.13 86.45 0.44 1.20 16 7 N -0.49 -18.47 3.13 -827.43 -2.59 -21.06 16 8 C 0.08 3.29 2.79 45.64 0.13 3.42 16 9 H 0.02 0.91 7.47 -2.38 -0.02 0.89 16 10 C -0.11 -3.71 5.13 31.67 0.16 -3.55 16 11 C -0.12 -4.41 6.91 31.89 0.22 -4.19 16 12 C -0.09 -4.18 5.59 31.67 0.18 -4.00 16 13 C 0.04 2.23 2.24 -10.81 -0.02 2.20 16 14 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 15 C -0.46 -24.59 4.93 25.60 0.13 -24.47 16 16 H 0.10 5.28 3.95 -2.92 -0.01 5.27 16 17 C -0.01 -0.37 5.34 84.66 0.45 0.08 16 18 N -0.94 -57.18 12.64 21.45 0.27 -56.91 16 19 Si 0.93 45.66 29.54 68.60 2.03 47.68 16 20 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H 0.05 2.29 5.93 -2.39 -0.01 2.27 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.94 6.69 -2.39 -0.02 1.93 16 26 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.04 1.17 7.67 -2.39 -0.02 1.15 16 31 H 0.08 2.17 7.01 -2.39 -0.02 2.16 16 32 H 0.07 2.44 6.41 -2.38 -0.02 2.42 16 33 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 37 H 0.03 1.53 7.85 -2.39 -0.02 1.51 16 38 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 Total: -1.00 -62.04 278.55 3.50 -58.55 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.01 Total: 8.56 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 2.78 Total: -36.82 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -2.32 Total: -77.97 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -62.04 3.50 -58.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260929331.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.593 kcal (2) G-P(sol) polarization free energy of solvation -62.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds