Wall clock time and date at job start Mon Mar 30 2020 03:25:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 110.37001 * 2 1
4 4 C 1.54383 * 110.51035 * 237.58016 * 2 1 3
5 5 C 1.54261 * 105.06080 * 217.31863 * 4 2 1
6 6 C 1.54381 * 105.06278 * 359.97438 * 5 4 2
7 7 N 1.48563 * 110.41358 * 122.35146 * 2 1 3
8 8 C 1.46900 * 110.99978 * 277.93476 * 7 2 1
9 9 H 1.09005 * 110.01740 * 331.23424 * 8 7 2
10 10 C 1.54263 * 110.03532 * 209.78924 * 8 7 2
11 11 C 1.54891 * 104.19701 * 217.10646 * 10 8 7
12 12 C 1.54890 * 102.74837 * 37.94402 * 11 10 8
13 13 C 1.53879 * 110.03025 * 92.62104 * 8 7 2
14 14 H 1.09000 * 110.03311 * 238.56848 * 13 8 7
15 15 C 1.50698 * 110.03199 * 359.97438 * 13 8 7
16 16 H 1.07990 * 120.00449 * 2.81182 * 15 13 8
17 17 C 1.37884 * 119.99603 * 182.80651 * 15 13 8
18 18 N 1.31503 * 120.00126 * 0.02562 * 17 15 13
19 19 Si 1.86806 * 119.99615 * 180.02562 * 17 15 13
20 20 H 1.48496 * 109.47237 * 0.02562 * 19 17 15
21 21 H 1.48497 * 109.46981 * 120.00084 * 19 17 15
22 22 H 1.48492 * 109.47120 * 240.00069 * 19 17 15
23 23 H 1.09000 * 109.46845 * 299.32684 * 1 2 3
24 24 H 1.09002 * 109.47147 * 59.32630 * 1 2 3
25 25 H 1.08994 * 109.46963 * 179.32976 * 1 2 3
26 26 H 1.08997 * 110.32523 * 336.21503 * 4 2 1
27 27 H 1.08998 * 110.32263 * 98.32588 * 4 2 1
28 28 H 1.08996 * 110.32275 * 118.89892 * 5 4 2
29 29 H 1.09001 * 110.32423 * 241.00373 * 5 4 2
30 30 H 1.08994 * 110.41224 * 265.07535 * 6 5 4
31 31 H 1.09003 * 110.41046 * 142.62651 * 6 5 4
32 32 H 1.09005 * 110.48359 * 335.78541 * 10 8 7
33 33 H 1.08996 * 110.49178 * 98.42576 * 10 8 7
34 34 H 1.08992 * 110.75453 * 279.62666 * 11 10 8
35 35 H 1.08996 * 110.75714 * 156.25340 * 11 10 8
36 36 H 1.09000 * 110.48532 * 203.38218 * 12 11 10
37 37 H 1.09001 * 110.49173 * 80.73565 * 12 11 10
38 38 H 0.97007 * 119.99990 * 179.97438 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9094 1.0218 0.0000
4 6 2.0709 -0.7752 -1.2206
5 6 3.3209 -1.5163 -0.7030
6 6 3.4306 -1.1260 0.7867
7 7 2.0482 -0.7451 1.1762
8 6 2.0544 0.1031 2.3756
9 1 2.1795 1.1483 2.0929
10 6 3.1928 -0.3291 3.3227
11 6 2.5939 -0.1558 4.7405
12 6 1.1267 -0.6143 4.5502
13 6 0.7406 -0.0782 3.1561
14 1 0.2287 0.8792 3.2529
15 6 -0.1473 -1.0694 2.4490
16 1 0.2015 -1.5656 1.5555
17 6 -1.4053 -1.3427 2.9428
18 7 -1.8304 -0.7382 4.0306
19 14 -2.5058 -2.5719 2.0667
20 1 -1.7984 -3.1094 0.8768
21 1 -2.8367 -3.6865 2.9905
22 1 -3.7569 -1.8975 1.6366
23 1 -0.3633 0.5033 0.8960
24 1 -0.3633 0.5243 -0.8839
25 1 -0.3633 -1.0275 -0.0120
26 1 1.3276 -1.4890 -1.5756
27 1 2.3422 -0.0838 -2.0183
28 1 3.1911 -2.5938 -0.8039
29 1 4.2071 -1.1898 -1.2472
30 1 4.1074 -0.2806 0.9093
31 1 3.7712 -1.9759 1.3782
32 1 3.4608 -1.3709 3.1464
33 1 4.0618 0.3162 3.1941
34 1 2.6352 0.8878 5.0523
35 1 3.1083 -0.7951 5.4580
36 1 0.4878 -0.1769 5.3174
37 1 1.0609 -1.7021 4.5723
38 1 -2.7156 -0.9303 4.3778
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260929331.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:24
Heat of formation + Delta-G solvation = -9.953870 kcal
Electronic energy + Delta-G solvation = -16785.059788 eV
Core-core repulsion = 14433.515000 eV
Total energy + Delta-G solvation = -2351.544787 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.64675 -37.65105 -34.48696 -32.31444 -32.07546 -29.61965 -27.34685 -26.72911
-25.20296 -22.46291 -21.32060 -20.54644 -20.13308 -18.01798 -16.99263 -16.62184
-16.12433 -15.77451 -15.25596 -14.80337 -14.35789 -13.87496 -13.67807 -13.49136
-13.25245 -12.84133 -12.67808 -12.62725 -12.27163 -12.10700 -11.95468 -11.72080
-11.61114 -11.49547 -11.35681 -11.17989 -11.05288 -10.86837 -10.47608 -10.26058
-8.81311 -7.89767 -5.83324 1.41239 1.45478 1.55277 2.57620 3.30585
3.42606 3.83750 3.92289 4.10470 4.20910 4.24534 4.36738 4.41752
4.66232 4.71020 4.76913 4.88009 4.93556 4.98987 5.00777 5.07430
5.09867 5.16332 5.16438 5.25449 5.34027 5.41218 5.46066 5.48475
5.65582 5.81987 5.82959 6.01516 6.13124 6.42146 6.46158 6.83566
7.30800 7.76650 9.22642
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.022088 B = 0.014010 C = 0.009692
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1267.377473 B = 1998.033888 C = 2888.347247
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.063 3.937
3 H 0.039 0.961
4 C -0.116 4.116
5 C -0.117 4.117
6 C 0.026 3.974
7 N -0.494 5.494
8 C 0.082 3.918
9 H 0.023 0.977
10 C -0.110 4.110
11 C -0.121 4.121
12 C -0.087 4.087
13 C 0.044 3.956
14 H -0.017 1.017
15 C -0.460 4.460
16 H 0.101 0.899
17 C -0.007 4.007
18 N -0.941 5.941
19 Si 0.929 3.071
20 H -0.262 1.262
21 H -0.295 1.295
22 H -0.293 1.293
23 H 0.048 0.952
24 H 0.049 0.951
25 H 0.045 0.955
26 H 0.063 0.937
27 H 0.082 0.918
28 H 0.068 0.932
29 H 0.086 0.914
30 H 0.044 0.956
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.074 0.926
34 H 0.061 0.939
35 H 0.070 0.930
36 H 0.023 0.977
37 H 0.029 0.971
38 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.442 0.515 -7.801 13.858
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.045 4.045
3 H 0.056 0.944
4 C -0.154 4.154
5 C -0.155 4.155
6 C -0.101 4.101
7 N -0.218 5.218
8 C -0.027 4.027
9 H 0.041 0.959
10 C -0.148 4.148
11 C -0.159 4.159
12 C -0.125 4.125
13 C 0.026 3.974
14 H 0.002 0.998
15 C -0.499 4.499
16 H 0.119 0.881
17 C -0.201 4.201
18 N -0.585 5.585
19 Si 0.758 3.242
20 H -0.186 1.186
21 H -0.222 1.222
22 H -0.219 1.219
23 H 0.067 0.933
24 H 0.068 0.932
25 H 0.064 0.936
26 H 0.082 0.918
27 H 0.100 0.900
28 H 0.086 0.914
29 H 0.104 0.896
30 H 0.062 0.938
31 H 0.094 0.906
32 H 0.091 0.909
33 H 0.092 0.908
34 H 0.079 0.921
35 H 0.088 0.912
36 H 0.042 0.958
37 H 0.048 0.952
38 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 10.971 0.048 -7.590 13.341
hybrid contribution -0.965 0.257 0.062 1.000
sum 10.006 0.305 -7.528 12.525
Atomic orbital electron populations
1.21889 0.94775 1.01182 1.00162 1.22632 0.95827 0.95012 0.91048
0.94352 1.22353 0.97598 0.99075 0.96403 1.22264 0.97964 1.00685
0.94565 1.23193 0.90513 0.99995 0.96426 1.65516 1.16760 1.37554
1.01947 1.22425 0.96630 0.92510 0.91115 0.95942 1.22510 0.96381
1.01628 0.94246 1.22504 0.96042 1.00487 0.96872 1.22080 0.93942
0.98233 0.98291 1.19289 0.91730 0.94488 0.91943 0.99839 1.22092
0.96945 1.20454 1.10374 0.88104 1.25648 0.99949 0.98346 0.96132
1.70146 1.18625 1.45624 1.24127 0.85932 0.79366 0.79791 0.79154
1.18558 1.22239 1.21946 0.93286 0.93239 0.93623 0.91842 0.89965
0.91351 0.89555 0.93792 0.90577 0.90874 0.90783 0.92065 0.91182
0.95841 0.95192 0.94460
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.83 7.53 71.98 0.54 -4.29 16
2 C 0.06 2.18 2.85 45.06 0.13 2.31 16
3 H 0.04 1.30 7.61 -2.39 -0.02 1.28 16
4 C -0.12 -3.13 6.55 31.49 0.21 -2.93 16
5 C -0.12 -2.84 7.00 31.49 0.22 -2.62 16
6 C 0.03 0.76 5.13 86.45 0.44 1.20 16
7 N -0.49 -18.47 3.13 -827.43 -2.59 -21.06 16
8 C 0.08 3.29 2.79 45.64 0.13 3.42 16
9 H 0.02 0.91 7.47 -2.38 -0.02 0.89 16
10 C -0.11 -3.71 5.13 31.67 0.16 -3.55 16
11 C -0.12 -4.41 6.91 31.89 0.22 -4.19 16
12 C -0.09 -4.18 5.59 31.67 0.18 -4.00 16
13 C 0.04 2.23 2.24 -10.81 -0.02 2.20 16
14 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16
15 C -0.46 -24.59 4.93 25.60 0.13 -24.47 16
16 H 0.10 5.28 3.95 -2.92 -0.01 5.27 16
17 C -0.01 -0.37 5.34 84.66 0.45 0.08 16
18 N -0.94 -57.18 12.64 21.45 0.27 -56.91 16
19 Si 0.93 45.66 29.54 68.60 2.03 47.68 16
20 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16
21 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16
22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16
23 H 0.05 2.29 5.93 -2.39 -0.01 2.27 16
24 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16
25 H 0.04 1.94 6.69 -2.39 -0.02 1.93 16
26 H 0.06 1.79 7.85 -2.39 -0.02 1.77 16
27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16
28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16
30 H 0.04 1.17 7.67 -2.39 -0.02 1.15 16
31 H 0.08 2.17 7.01 -2.39 -0.02 2.16 16
32 H 0.07 2.44 6.41 -2.38 -0.02 2.42 16
33 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16
34 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16
35 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16
36 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16
37 H 0.03 1.53 7.85 -2.39 -0.02 1.51 16
38 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16
Total: -1.00 -62.04 278.55 3.50 -58.55
By element:
Atomic # 1 Polarization: 7.55 SS G_CDS: 1.01 Total: 8.56 kcal
Atomic # 6 Polarization: -39.60 SS G_CDS: 2.78 Total: -36.82 kcal
Atomic # 7 Polarization: -75.65 SS G_CDS: -2.32 Total: -77.97 kcal
Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal
Total: -62.04 3.50 -58.55 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260929331.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 48.593 kcal
(2) G-P(sol) polarization free energy of solvation -62.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.452 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.498 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.954 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds