Wall clock time and date at job start Mon Mar 30 2020 03:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.87398 * 2 1 4 4 C 1.55140 * 110.99039 * 236.15497 * 2 1 3 5 5 C 1.54320 * 103.01623 * 206.21824 * 4 2 1 6 6 N 1.47439 * 107.23552 * 22.28504 * 5 4 2 7 7 C 1.46897 * 111.00481 * 123.25919 * 6 5 4 8 8 H 1.08994 * 110.53756 * 297.90586 * 7 6 5 9 9 C 1.54890 * 110.48370 * 60.51312 * 7 6 5 10 10 C 1.54896 * 102.74634 * 156.62340 * 9 7 6 11 11 C 1.54266 * 104.19330 * 322.05932 * 10 9 7 12 12 C 1.53876 * 106.60162 * 23.60942 * 11 10 9 13 13 H 1.08999 * 110.07065 * 240.69061 * 12 11 10 14 14 C 1.50701 * 110.02846 * 119.28213 * 12 11 10 15 15 H 1.07995 * 119.99861 * 242.83031 * 14 12 11 16 16 C 1.37878 * 119.99877 * 62.83932 * 14 12 11 17 17 N 1.31515 * 120.00243 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99791 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47193 * 89.99514 * 18 16 14 20 20 H 1.48498 * 109.47290 * 210.00011 * 18 16 14 21 21 H 1.48502 * 109.47137 * 329.99644 * 18 16 14 22 22 C 1.47848 * 108.56971 * 0.98657 * 6 5 4 23 23 H 1.09006 * 109.47287 * 182.39405 * 1 2 3 24 24 H 1.09009 * 109.47196 * 302.38851 * 1 2 3 25 25 H 1.08992 * 109.47185 * 62.39267 * 1 2 3 26 26 H 1.08994 * 110.70641 * 87.83097 * 4 2 1 27 27 H 1.09002 * 110.85417 * 324.66650 * 4 2 1 28 28 H 1.09003 * 109.88614 * 262.87385 * 5 4 2 29 29 H 1.09000 * 109.88361 * 141.69073 * 5 4 2 30 30 H 1.08997 * 110.75629 * 38.31236 * 9 7 6 31 31 H 1.08991 * 110.92015 * 275.00964 * 9 7 6 32 32 H 1.09001 * 110.48134 * 80.73635 * 10 9 7 33 33 H 1.09001 * 110.48634 * 203.37977 * 10 9 7 34 34 H 1.08998 * 110.02904 * 142.89744 * 11 10 9 35 35 H 1.09005 * 110.03241 * 264.32010 * 11 10 9 36 36 H 0.96996 * 119.99666 * 180.02562 * 17 16 14 37 37 H 1.08995 * 110.37024 * 94.73816 * 22 6 5 38 38 H 1.08996 * 110.37426 * 217.07781 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4696 -1.2700 -0.7013 6 7 3.4321 -1.2412 0.7724 7 6 3.7629 -2.5579 1.3334 8 1 3.0305 -3.3018 1.0203 9 6 5.1883 -2.9869 0.9053 10 6 5.5856 -4.0003 2.0074 11 6 4.9944 -3.4033 3.3011 12 6 3.8355 -2.4861 2.8726 13 1 4.0320 -1.4620 3.1899 14 6 2.5424 -2.9734 3.4737 15 1 1.7395 -3.3044 2.8318 16 6 2.3843 -2.9964 4.8432 17 7 3.3621 -2.5936 5.6250 18 14 0.7811 -3.5997 5.5883 19 1 0.8640 -5.0637 5.8223 20 1 0.5425 -2.9048 6.8787 21 1 -0.3380 -3.3101 4.6559 22 6 2.0857 -0.8058 1.2007 23 1 -0.3634 -1.0268 0.0429 24 1 -0.3634 0.5505 0.8679 25 1 -0.3633 0.4762 -0.9106 26 1 2.1878 -0.1686 -2.0807 27 1 1.4489 -1.6635 -1.4230 28 1 4.2420 -0.5929 -1.0660 29 1 3.6689 -2.2842 -1.0474 30 1 5.8649 -2.1324 0.9043 31 1 5.1729 -3.4667 -0.0732 32 1 5.1474 -4.9772 1.8030 33 1 6.6704 -4.0759 2.0830 34 1 4.6215 -4.2007 3.9439 35 1 5.7542 -2.8243 3.8264 36 1 3.2510 -2.6101 6.5884 37 1 1.4537 -1.6705 1.4025 38 1 2.1553 -0.1711 2.0841 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260938145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:37 Heat of formation + Delta-G solvation = -19.182899 kcal Electronic energy + Delta-G solvation = -16296.440449 eV Core-core repulsion = 13944.495461 eV Total energy + Delta-G solvation = -2351.944988 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.96191 -36.35490 -32.59779 -31.85911 -29.36210 -27.85351 -26.66538 -24.67231 -23.68757 -20.96442 -20.02631 -18.99641 -18.53456 -16.35433 -15.50049 -15.23066 -14.62786 -13.90638 -13.57549 -13.28944 -12.86694 -12.37424 -12.27052 -12.13684 -12.00096 -11.56026 -11.37943 -11.00172 -10.67785 -10.60879 -10.47015 -10.37153 -10.23176 -10.10858 -9.85763 -9.78756 -9.49263 -8.96903 -8.61252 -8.30718 -7.49144 -5.94485 -3.96674 3.32159 3.39431 3.41637 4.47328 4.69274 4.94979 5.10220 5.27724 5.38390 5.59203 5.71312 5.75166 5.82401 5.83603 5.91706 6.00431 6.13256 6.17193 6.23426 6.36349 6.39442 6.46852 6.52112 6.58731 6.74462 6.81832 6.86719 6.91954 7.02259 7.31038 7.45522 7.74913 7.77750 7.84599 8.02219 8.26742 8.56046 9.05982 9.65887 11.14803 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.011285 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.930526 B = 2480.683248 C = 3499.655332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.076 0.924 4 C -0.137 4.137 5 C 0.041 3.959 6 N -0.521 5.521 7 C 0.081 3.919 8 H 0.035 0.965 9 C -0.115 4.115 10 C -0.126 4.126 11 C -0.092 4.092 12 C 0.057 3.943 13 H 0.039 0.961 14 C -0.508 4.508 15 H 0.050 0.950 16 C 0.063 3.937 17 N -0.887 5.887 18 Si 0.883 3.117 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.062 3.938 23 H 0.053 0.947 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.038 0.962 36 H 0.258 0.742 37 H 0.056 0.944 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.200 2.302 -10.598 10.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 H 0.095 0.905 4 C -0.175 4.175 5 C -0.087 4.087 6 N -0.245 5.245 7 C -0.027 4.027 8 H 0.053 0.947 9 C -0.153 4.153 10 C -0.164 4.164 11 C -0.130 4.130 12 C 0.038 3.962 13 H 0.057 0.943 14 C -0.546 4.546 15 H 0.068 0.932 16 C -0.139 4.139 17 N -0.525 5.525 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.213 1.213 21 H -0.201 1.201 22 C -0.066 4.066 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.776 2.668 -10.203 10.575 hybrid contribution -1.455 -1.000 0.231 1.780 sum -2.230 1.668 -9.972 10.354 Atomic orbital electron populations 1.21689 0.95057 1.01783 1.01147 1.22364 0.95159 0.99537 0.95610 0.90534 1.22832 0.97243 0.99543 0.97920 1.22780 0.96232 0.99851 0.89846 1.63649 1.27356 1.28071 1.05433 1.22913 0.93994 0.87116 0.98712 0.94705 1.22523 0.97477 0.98528 0.96750 1.22399 0.98644 0.97915 0.97479 1.22037 0.97439 0.99476 0.94063 1.19232 0.93790 0.96365 0.86781 0.94328 1.21217 0.99462 1.42747 0.91195 0.93192 1.24932 0.96051 0.95517 0.97369 1.69986 1.31500 1.47289 1.03772 0.86741 0.84546 0.78827 0.78750 1.20875 1.21331 1.20062 1.22968 0.88659 0.98499 0.96468 0.92750 0.92493 0.93176 0.91767 0.91981 0.91610 0.93377 0.91606 0.93872 0.93021 0.93552 0.92068 0.94333 0.93193 0.92586 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.30 37.16 0.35 -1.49 16 2 C -0.11 -1.61 3.63 -88.48 -0.32 -1.93 16 3 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -1.91 6.41 -24.91 -0.16 -2.07 16 5 C 0.04 0.66 6.34 -2.84 -0.02 0.64 16 6 N -0.52 -10.14 4.99 -221.32 -1.10 -11.25 16 7 C 0.08 1.71 1.73 -66.06 -0.11 1.60 16 8 H 0.04 0.79 7.62 -51.93 -0.40 0.39 16 9 C -0.11 -2.17 5.63 -24.73 -0.14 -2.30 16 10 C -0.13 -2.48 6.83 -25.07 -0.17 -2.65 16 11 C -0.09 -2.19 5.60 -25.61 -0.14 -2.33 16 12 C 0.06 1.43 2.01 -90.66 -0.18 1.24 16 13 H 0.04 1.08 8.04 -51.93 -0.42 0.67 16 14 C -0.51 -13.72 7.34 -34.44 -0.25 -13.97 16 15 H 0.05 1.35 6.98 -52.49 -0.37 0.98 16 16 C 0.06 1.74 5.09 -17.82 -0.09 1.64 16 17 N -0.89 -25.59 12.44 55.43 0.69 -24.90 16 18 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.06 1.17 5.19 -2.29 -0.01 1.16 16 23 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 24 H 0.06 0.74 8.14 -51.92 -0.42 0.31 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.76 6.74 -51.93 -0.35 0.41 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.04 0.72 7.57 -51.93 -0.39 0.33 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.60 7.26 -51.93 -0.38 1.22 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.06 1.17 6.53 -51.93 -0.34 0.83 16 38 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 290.00 15.07 4.37 4.37 Total: -1.00 -27.91 290.00 -9.16 -37.07 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -6.84 Total: -1.14 kcal Atomic # 6 Polarization: -19.21 SS G_CDS: -1.26 Total: -20.47 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.41 Total: -36.15 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.91 -9.16 -37.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.889 kcal (2) G-P(sol) polarization free energy of solvation -27.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds