Wall clock time and date at job start Mon Mar 30 2020 03:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 110.87398 * 2 1 4 4 C 1.55140 * 110.99039 * 236.15497 * 2 1 3 5 5 C 1.54320 * 103.01623 * 206.21824 * 4 2 1 6 6 N 1.47439 * 107.23552 * 22.28504 * 5 4 2 7 7 C 1.46897 * 111.00481 * 123.25919 * 6 5 4 8 8 H 1.08994 * 110.53756 * 297.90586 * 7 6 5 9 9 C 1.54890 * 110.48370 * 60.51312 * 7 6 5 10 10 C 1.54896 * 102.74634 * 156.62340 * 9 7 6 11 11 C 1.54266 * 104.19330 * 322.05932 * 10 9 7 12 12 C 1.53876 * 106.60162 * 23.60942 * 11 10 9 13 13 H 1.08999 * 110.07065 * 240.69061 * 12 11 10 14 14 C 1.50701 * 110.02846 * 119.28213 * 12 11 10 15 15 H 1.07995 * 119.99861 * 242.83031 * 14 12 11 16 16 C 1.37878 * 119.99877 * 62.83932 * 14 12 11 17 17 N 1.31515 * 120.00243 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99791 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47193 * 89.99514 * 18 16 14 20 20 H 1.48498 * 109.47290 * 210.00011 * 18 16 14 21 21 H 1.48502 * 109.47137 * 329.99644 * 18 16 14 22 22 C 1.47848 * 108.56971 * 0.98657 * 6 5 4 23 23 H 1.09006 * 109.47287 * 182.39405 * 1 2 3 24 24 H 1.09009 * 109.47196 * 302.38851 * 1 2 3 25 25 H 1.08992 * 109.47185 * 62.39267 * 1 2 3 26 26 H 1.08994 * 110.70641 * 87.83097 * 4 2 1 27 27 H 1.09002 * 110.85417 * 324.66650 * 4 2 1 28 28 H 1.09003 * 109.88614 * 262.87385 * 5 4 2 29 29 H 1.09000 * 109.88361 * 141.69073 * 5 4 2 30 30 H 1.08997 * 110.75629 * 38.31236 * 9 7 6 31 31 H 1.08991 * 110.92015 * 275.00964 * 9 7 6 32 32 H 1.09001 * 110.48134 * 80.73635 * 10 9 7 33 33 H 1.09001 * 110.48634 * 203.37977 * 10 9 7 34 34 H 1.08998 * 110.02904 * 142.89744 * 11 10 9 35 35 H 1.09005 * 110.03241 * 264.32010 * 11 10 9 36 36 H 0.96996 * 119.99666 * 180.02562 * 17 16 14 37 37 H 1.08995 * 110.37024 * 94.73816 * 22 6 5 38 38 H 1.08996 * 110.37426 * 217.07781 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9184 1.0184 0.0000 4 6 2.0857 -0.8067 -1.2030 5 6 3.4696 -1.2700 -0.7013 6 7 3.4321 -1.2412 0.7724 7 6 3.7629 -2.5579 1.3334 8 1 3.0305 -3.3018 1.0203 9 6 5.1883 -2.9869 0.9053 10 6 5.5856 -4.0003 2.0074 11 6 4.9944 -3.4033 3.3011 12 6 3.8355 -2.4861 2.8726 13 1 4.0320 -1.4620 3.1899 14 6 2.5424 -2.9734 3.4737 15 1 1.7395 -3.3044 2.8318 16 6 2.3843 -2.9964 4.8432 17 7 3.3621 -2.5936 5.6250 18 14 0.7811 -3.5997 5.5883 19 1 0.8640 -5.0637 5.8223 20 1 0.5425 -2.9048 6.8787 21 1 -0.3380 -3.3101 4.6559 22 6 2.0857 -0.8058 1.2007 23 1 -0.3634 -1.0268 0.0429 24 1 -0.3634 0.5505 0.8679 25 1 -0.3633 0.4762 -0.9106 26 1 2.1878 -0.1686 -2.0807 27 1 1.4489 -1.6635 -1.4230 28 1 4.2420 -0.5929 -1.0660 29 1 3.6689 -2.2842 -1.0474 30 1 5.8649 -2.1324 0.9043 31 1 5.1729 -3.4667 -0.0732 32 1 5.1474 -4.9772 1.8030 33 1 6.6704 -4.0759 2.0830 34 1 4.6215 -4.2007 3.9439 35 1 5.7542 -2.8243 3.8264 36 1 3.2510 -2.6101 6.5884 37 1 1.4537 -1.6705 1.4025 38 1 2.1553 -0.1711 2.0841 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:36 Heat of formation + Delta-G solvation = -35.385454 kcal Electronic energy + Delta-G solvation = -16297.143045 eV Core-core repulsion = 13944.495461 eV Total energy + Delta-G solvation = -2352.647584 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.46998 -37.96640 -34.59154 -33.31879 -30.83476 -29.60909 -28.25954 -26.23334 -25.50506 -22.38931 -21.49939 -20.51879 -20.31209 -18.35477 -17.02289 -16.81316 -16.46791 -15.62796 -15.11230 -14.57077 -14.19370 -14.13836 -13.87234 -13.60911 -13.45917 -13.26863 -12.97202 -12.67023 -12.53551 -12.35667 -11.99787 -11.82403 -11.62562 -11.62013 -11.35811 -11.34888 -11.29039 -10.81966 -10.70129 -10.44176 -9.03658 -8.09797 -6.17938 1.37269 1.38183 1.47561 2.42298 3.16743 3.28263 3.70788 3.86209 4.06326 4.12189 4.13210 4.35643 4.45553 4.59469 4.65447 4.70110 4.84775 4.87052 4.91871 4.95000 4.98137 5.08475 5.10880 5.11700 5.17256 5.24993 5.31448 5.36545 5.46652 5.52743 5.60832 5.67062 5.90157 5.95206 6.24824 6.45171 6.56274 6.93142 7.47733 8.99359 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.011285 C = 0.007999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.930526 B = 2480.683248 C = 3499.655332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.084 0.916 4 C -0.128 4.128 5 C 0.038 3.962 6 N -0.536 5.536 7 C 0.089 3.911 8 H 0.021 0.979 9 C -0.103 4.103 10 C -0.117 4.117 11 C -0.089 4.089 12 C 0.055 3.945 13 H -0.004 1.004 14 C -0.514 4.514 15 H 0.044 0.956 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.944 3.056 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.062 3.938 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.030 0.970 35 H 0.021 0.979 36 H 0.258 0.742 37 H 0.030 0.970 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 2.155 -13.046 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.119 4.119 3 H 0.102 0.898 4 C -0.166 4.166 5 C -0.090 4.090 6 N -0.260 5.260 7 C -0.020 4.020 8 H 0.039 0.961 9 C -0.141 4.141 10 C -0.155 4.155 11 C -0.127 4.127 12 C 0.036 3.964 13 H 0.014 0.986 14 C -0.553 4.553 15 H 0.062 0.938 16 C -0.186 4.186 17 N -0.559 5.559 18 Si 0.771 3.229 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.194 1.194 22 C -0.066 4.066 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.097 0.903 26 H 0.114 0.886 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.048 0.952 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.151 2.519 -12.671 12.970 hybrid contribution -1.322 -0.911 1.020 1.902 sum -2.473 1.608 -11.651 12.019 Atomic orbital electron populations 1.21670 0.93601 1.01600 1.02456 1.22332 0.96339 0.99293 0.93926 0.89762 1.22808 0.95671 0.99894 0.98198 1.22902 0.98109 1.00812 0.87151 1.63570 1.27483 1.26820 1.08150 1.22671 0.95454 0.87881 0.95961 0.96114 1.22462 0.95357 0.98450 0.97850 1.22337 1.00057 0.98182 0.94930 1.21882 0.96755 0.98230 0.95870 1.19145 0.93427 0.93891 0.89933 0.98622 1.21468 1.00141 1.42194 0.91452 0.93757 1.25676 0.99161 0.95840 0.97924 1.70114 1.33368 1.48537 1.03855 0.85764 0.80856 0.78435 0.77893 1.20199 1.21072 1.19380 1.22843 0.88698 0.97585 0.97473 0.93538 0.92863 0.90342 0.88621 0.91731 0.90085 0.92759 0.91374 0.90618 0.92102 0.90950 0.95080 0.96048 0.93298 0.95199 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.30 71.98 0.67 -2.65 16 2 C -0.10 -2.82 3.63 -9.41 -0.03 -2.86 16 3 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 4 C -0.13 -3.14 6.41 31.78 0.20 -2.94 16 5 C 0.04 1.10 6.34 86.65 0.55 1.65 16 6 N -0.54 -20.71 4.99 -854.13 -4.26 -24.97 16 7 C 0.09 3.78 1.73 45.99 0.08 3.86 16 8 H 0.02 0.94 7.62 -2.39 -0.02 0.92 16 9 C -0.10 -3.68 5.63 31.89 0.18 -3.50 16 10 C -0.12 -4.43 6.83 31.67 0.22 -4.22 16 11 C -0.09 -4.37 5.60 31.32 0.18 -4.19 16 12 C 0.05 2.85 2.01 -10.82 -0.02 2.83 16 13 H 0.00 -0.26 8.04 -2.39 -0.02 -0.28 16 14 C -0.51 -28.84 7.34 25.60 0.19 -28.66 16 15 H 0.04 2.48 6.98 -2.91 -0.02 2.46 16 16 C 0.01 0.70 5.09 84.65 0.43 1.13 16 17 N -0.92 -55.13 12.44 21.45 0.27 -54.87 16 18 Si 0.94 44.78 29.54 68.60 2.03 46.81 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C 0.06 2.42 5.19 86.77 0.45 2.87 16 23 H 0.05 1.20 8.11 -2.38 -0.02 1.18 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.58 8.04 -2.39 -0.02 1.56 16 28 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.53 6.74 -2.39 -0.02 1.51 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.25 7.57 -2.39 -0.02 2.23 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.03 1.67 7.26 -2.39 -0.02 1.65 16 35 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.03 1.30 6.53 -2.39 -0.02 1.28 16 38 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -62.73 290.00 2.11 -60.62 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.99 Total: 9.09 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.09 Total: -36.68 kcal Atomic # 7 Polarization: -75.84 SS G_CDS: -3.99 Total: -79.84 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.73 2.11 -60.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.233 kcal (2) G-P(sol) polarization free energy of solvation -62.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds