Wall clock time and date at job start Mon Mar 30 2020 03:25:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08995 * 110.36811 * 2 1
4 4 C 1.54384 * 110.50782 * 237.58155 * 2 1 3
5 5 C 1.54268 * 105.05990 * 217.31923 * 4 2 1
6 6 C 1.54383 * 105.05900 * 359.97438 * 5 4 2
7 7 N 1.48561 * 110.41170 * 122.35186 * 2 1 3
8 8 C 1.46897 * 111.00199 * 277.93575 * 7 2 1
9 9 H 1.09002 * 110.81529 * 315.16691 * 8 7 2
10 10 C 1.54887 * 110.76020 * 191.82878 * 8 7 2
11 11 C 1.54264 * 104.19855 * 203.73979 * 10 8 7
12 12 C 1.53872 * 106.59614 * 23.60932 * 11 10 8
13 13 H 1.09001 * 110.03268 * 240.66393 * 12 11 10
14 14 C 1.50707 * 110.03335 * 119.28294 * 12 11 10
15 15 H 1.07997 * 120.00071 * 266.00750 * 14 12 11
16 16 C 1.37875 * 119.99667 * 86.28261 * 14 12 11
17 17 N 1.31514 * 119.99977 * 185.02875 * 16 14 12
18 18 Si 1.86796 * 120.00121 * 5.02858 * 16 14 12
19 19 H 1.48504 * 109.47385 * 84.86959 * 18 16 14
20 20 H 1.48501 * 109.47143 * 204.86745 * 18 16 14
21 21 H 1.48501 * 109.47379 * 324.86767 * 18 16 14
22 22 C 1.54268 * 106.60147 * 359.97438 * 12 11 10
23 23 H 1.09003 * 109.46682 * 297.64820 * 1 2 3
24 24 H 1.08995 * 109.47105 * 57.64868 * 1 2 3
25 25 H 1.08995 * 109.47103 * 177.65082 * 1 2 3
26 26 H 1.08998 * 110.32536 * 336.21428 * 4 2 1
27 27 H 1.09001 * 110.32375 * 98.42435 * 4 2 1
28 28 H 1.08995 * 110.32018 * 118.89472 * 5 4 2
29 29 H 1.08993 * 110.32409 * 241.00530 * 5 4 2
30 30 H 1.08998 * 110.41655 * 265.07316 * 6 5 4
31 31 H 1.09003 * 110.41139 * 142.62676 * 6 5 4
32 32 H 1.09000 * 110.48591 * 85.05938 * 10 8 7
33 33 H 1.09000 * 110.48557 * 322.42055 * 10 8 7
34 34 H 1.08995 * 110.03441 * 264.32547 * 11 10 8
35 35 H 1.08996 * 110.03263 * 142.88964 * 11 10 8
36 36 H 0.96997 * 119.99969 * 180.02562 * 17 16 14
37 37 H 1.09004 * 110.48535 * 95.06821 * 22 12 11
38 38 H 1.08995 * 110.48757 * 217.71356 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9094 1.0218 0.0000
4 6 2.0709 -0.7752 -1.2206
5 6 3.3209 -1.5163 -0.7030
6 6 3.4305 -1.1261 0.7866
7 7 2.0481 -0.7451 1.1762
8 6 2.0543 0.1030 2.3757
9 1 2.4540 1.0915 2.1491
10 6 2.8595 -0.5663 3.5171
11 6 2.2915 0.0684 4.8033
12 6 0.8751 0.5627 4.4610
13 1 0.8110 1.6412 4.6052
14 6 -0.1393 -0.1351 5.3302
15 1 -0.6323 -1.0277 4.9745
16 6 -0.4421 0.3695 6.5771
17 7 -1.2518 -0.2917 7.3751
18 14 0.2979 1.9920 7.1330
19 1 -0.5352 3.1140 6.6306
20 1 0.3414 2.0337 8.6168
21 1 1.6757 2.1184 6.5937
22 6 0.6320 0.2118 2.9786
23 1 -0.3633 0.4769 0.9104
24 1 -0.3633 0.5499 -0.8681
25 1 -0.3633 -1.0268 -0.0421
26 1 1.3275 -1.4890 -1.5756
27 1 2.3438 -0.0836 -2.0178
28 1 3.1910 -2.5938 -0.8039
29 1 4.2070 -1.1899 -1.2472
30 1 4.1074 -0.2806 0.9094
31 1 3.7711 -1.9759 1.3782
32 1 3.9214 -0.3414 3.4175
33 1 2.6953 -1.6438 3.5187
34 1 2.9150 0.9071 5.1127
35 1 2.2452 -0.6762 5.5980
36 1 -1.4651 0.0634 8.2521
37 1 0.1082 -0.7403 2.8928
38 1 0.0682 1.0042 2.4865
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260956774.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:34
Heat of formation + Delta-G solvation = -13.815950 kcal
Electronic energy + Delta-G solvation = -16060.372456 eV
Core-core repulsion = 13708.660196 eV
Total energy + Delta-G solvation = -2351.712260 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.34112 -36.55251 -32.56795 -31.37189 -30.95430 -28.12871 -26.76674 -25.39816
-23.36238 -21.22273 -20.03445 -19.48611 -18.61303 -16.82112 -15.82977 -15.50046
-14.80748 -14.30080 -14.09854 -13.17307 -12.99103 -12.80773 -12.38914 -12.26582
-12.04412 -11.77077 -11.58617 -11.16851 -11.10644 -10.75231 -10.69850 -10.48279
-10.25312 -10.20193 -9.94348 -9.81507 -9.60871 -9.32402 -8.83587 -8.45246
-8.14996 -6.00460 -3.97116 3.32584 3.40852 3.43915 4.20836 4.48723
4.70833 4.80077 5.04193 5.23120 5.30101 5.47686 5.54948 5.55615
5.62098 5.72264 5.80506 5.81919 5.89305 6.00808 6.08151 6.08809
6.17690 6.27392 6.38626 6.46541 6.54376 6.58472 6.74261 6.86991
6.98087 7.05953 7.19726 7.38046 7.47546 7.65030 7.89933 8.63453
9.06255 9.63653 11.13076
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.045923 B = 0.007114 C = 0.006733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 609.575681 B = 3934.914314 C = 4157.430536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.059 3.941
3 H 0.045 0.955
4 C -0.120 4.120
5 C -0.124 4.124
6 C 0.033 3.967
7 N -0.496 5.496
8 C 0.063 3.937
9 H 0.039 0.961
10 C -0.110 4.110
11 C -0.122 4.122
12 C 0.011 3.989
13 H 0.025 0.975
14 C -0.503 4.503
15 H 0.073 0.927
16 C 0.067 3.933
17 N -0.904 5.904
18 Si 0.875 3.125
19 H -0.278 1.278
20 H -0.291 1.291
21 H -0.264 1.264
22 C -0.091 4.091
23 H 0.071 0.929
24 H 0.050 0.950
25 H 0.061 0.939
26 H 0.071 0.929
27 H 0.062 0.938
28 H 0.069 0.931
29 H 0.062 0.938
30 H 0.038 0.962
31 H 0.079 0.921
32 H 0.043 0.957
33 H 0.069 0.931
34 H 0.036 0.964
35 H 0.067 0.933
36 H 0.262 0.738
37 H 0.073 0.927
38 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.590 0.827 -14.718 17.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.049 4.049
3 H 0.063 0.937
4 C -0.158 4.158
5 C -0.162 4.162
6 C -0.095 4.095
7 N -0.220 5.220
8 C -0.045 4.045
9 H 0.057 0.943
10 C -0.148 4.148
11 C -0.161 4.161
12 C -0.008 4.008
13 H 0.043 0.957
14 C -0.541 4.541
15 H 0.091 0.909
16 C -0.133 4.133
17 N -0.542 5.542
18 Si 0.702 3.298
19 H -0.204 1.204
20 H -0.218 1.218
21 H -0.188 1.188
22 C -0.129 4.129
23 H 0.090 0.910
24 H 0.069 0.931
25 H 0.080 0.920
26 H 0.089 0.911
27 H 0.080 0.920
28 H 0.088 0.912
29 H 0.081 0.919
30 H 0.056 0.944
31 H 0.097 0.903
32 H 0.062 0.938
33 H 0.088 0.912
34 H 0.054 0.946
35 H 0.086 0.914
36 H 0.072 0.928
37 H 0.092 0.908
38 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges 8.167 0.366 -14.389 16.550
hybrid contribution 0.898 1.667 0.324 1.921
sum 9.065 2.033 -14.066 16.857
Atomic orbital electron populations
1.21920 0.93792 1.02516 1.02105 1.22619 0.96470 0.95416 0.90431
0.93706 1.22364 0.97496 0.98988 0.96961 1.22288 0.97602 1.00802
0.95557 1.23036 0.91039 1.00058 0.95366 1.65496 1.16648 1.37490
1.02402 1.22959 0.99002 0.93186 0.89403 0.94330 1.22365 0.96746
1.00577 0.95078 1.22562 0.98092 0.99117 0.96283 1.19691 0.92935
0.95734 0.92459 0.95672 1.21116 1.21547 1.11826 0.99564 0.90862
1.25055 0.94787 0.97020 0.96474 1.69918 1.36588 1.38625 1.09112
0.86908 0.80556 0.84913 0.77395 1.20429 1.21756 1.18822 1.22460
0.93202 1.01162 0.96080 0.90981 0.93148 0.91990 0.91061 0.91967
0.91246 0.91936 0.94412 0.90251 0.93785 0.91236 0.94565 0.91384
0.92838 0.90795 0.93469
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.98 9.09 37.16 0.34 -1.64 16
2 C 0.06 0.81 2.88 -66.07 -0.19 0.62 16
3 H 0.04 0.62 7.78 -51.93 -0.40 0.22 16
4 C -0.12 -1.34 6.55 -25.34 -0.17 -1.51 16
5 C -0.12 -1.36 7.00 -25.34 -0.18 -1.54 16
6 C 0.03 0.44 5.54 -2.16 -0.01 0.43 16
7 N -0.50 -7.74 4.98 -211.87 -1.05 -8.80 16
8 C 0.06 1.11 2.46 -65.74 -0.16 0.94 16
9 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16
10 C -0.11 -1.99 5.28 -25.07 -0.13 -2.12 16
11 C -0.12 -2.62 5.84 -25.62 -0.15 -2.77 16
12 C 0.01 0.27 2.35 -90.65 -0.21 0.05 16
13 H 0.03 0.60 5.97 -51.93 -0.31 0.29 16
14 C -0.50 -14.18 8.62 -34.44 -0.30 -14.48 16
15 H 0.07 2.26 7.80 -52.49 -0.41 1.85 16
16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
17 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16
18 Si 0.87 21.82 26.76 -169.99 -4.55 17.27 16
19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16
21 H -0.26 -6.28 6.30 56.52 0.36 -5.92 16
22 C -0.09 -1.86 4.46 -25.09 -0.11 -1.98 16
23 H 0.07 1.10 4.98 -51.93 -0.26 0.84 16
24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
25 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16
26 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16
27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
30 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16
31 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16
32 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16
33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16
34 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16
35 H 0.07 1.57 7.67 -51.93 -0.40 1.17 16
36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16
37 H 0.07 1.63 7.68 -51.93 -0.40 1.23 16
38 H 0.05 0.91 6.42 -51.93 -0.33 0.58 16
LS Contribution 284.62 15.07 4.29 4.29
Total: -1.00 -29.61 284.62 -8.60 -38.21
By element:
Atomic # 1 Polarization: 5.01 SS G_CDS: -6.69 Total: -1.69 kcal
Atomic # 6 Polarization: -20.76 SS G_CDS: -1.37 Total: -22.13 kcal
Atomic # 7 Polarization: -35.67 SS G_CDS: -0.28 Total: -35.95 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -4.55 Total: 17.27 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -29.61 -8.60 -38.21 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260956774.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.396 kcal
(2) G-P(sol) polarization free energy of solvation -29.609 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.213 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.816 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds