Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.36811 * 2 1 4 4 C 1.54384 * 110.50782 * 237.58155 * 2 1 3 5 5 C 1.54268 * 105.05990 * 217.31923 * 4 2 1 6 6 C 1.54383 * 105.05900 * 359.97438 * 5 4 2 7 7 N 1.48561 * 110.41170 * 122.35186 * 2 1 3 8 8 C 1.46897 * 111.00199 * 277.93575 * 7 2 1 9 9 H 1.09002 * 110.81529 * 315.16691 * 8 7 2 10 10 C 1.54887 * 110.76020 * 191.82878 * 8 7 2 11 11 C 1.54264 * 104.19855 * 203.73979 * 10 8 7 12 12 C 1.53872 * 106.59614 * 23.60932 * 11 10 8 13 13 H 1.09001 * 110.03268 * 240.66393 * 12 11 10 14 14 C 1.50707 * 110.03335 * 119.28294 * 12 11 10 15 15 H 1.07997 * 120.00071 * 266.00750 * 14 12 11 16 16 C 1.37875 * 119.99667 * 86.28261 * 14 12 11 17 17 N 1.31514 * 119.99977 * 185.02875 * 16 14 12 18 18 Si 1.86796 * 120.00121 * 5.02858 * 16 14 12 19 19 H 1.48504 * 109.47385 * 84.86959 * 18 16 14 20 20 H 1.48501 * 109.47143 * 204.86745 * 18 16 14 21 21 H 1.48501 * 109.47379 * 324.86767 * 18 16 14 22 22 C 1.54268 * 106.60147 * 359.97438 * 12 11 10 23 23 H 1.09003 * 109.46682 * 297.64820 * 1 2 3 24 24 H 1.08995 * 109.47105 * 57.64868 * 1 2 3 25 25 H 1.08995 * 109.47103 * 177.65082 * 1 2 3 26 26 H 1.08998 * 110.32536 * 336.21428 * 4 2 1 27 27 H 1.09001 * 110.32375 * 98.42435 * 4 2 1 28 28 H 1.08995 * 110.32018 * 118.89472 * 5 4 2 29 29 H 1.08993 * 110.32409 * 241.00530 * 5 4 2 30 30 H 1.08998 * 110.41655 * 265.07316 * 6 5 4 31 31 H 1.09003 * 110.41139 * 142.62676 * 6 5 4 32 32 H 1.09000 * 110.48591 * 85.05938 * 10 8 7 33 33 H 1.09000 * 110.48557 * 322.42055 * 10 8 7 34 34 H 1.08995 * 110.03441 * 264.32547 * 11 10 8 35 35 H 1.08996 * 110.03263 * 142.88964 * 11 10 8 36 36 H 0.96997 * 119.99969 * 180.02562 * 17 16 14 37 37 H 1.09004 * 110.48535 * 95.06821 * 22 12 11 38 38 H 1.08995 * 110.48757 * 217.71356 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7752 -1.2206 5 6 3.3209 -1.5163 -0.7030 6 6 3.4305 -1.1261 0.7866 7 7 2.0481 -0.7451 1.1762 8 6 2.0543 0.1030 2.3757 9 1 2.4540 1.0915 2.1491 10 6 2.8595 -0.5663 3.5171 11 6 2.2915 0.0684 4.8033 12 6 0.8751 0.5627 4.4610 13 1 0.8110 1.6412 4.6052 14 6 -0.1393 -0.1351 5.3302 15 1 -0.6323 -1.0277 4.9745 16 6 -0.4421 0.3695 6.5771 17 7 -1.2518 -0.2917 7.3751 18 14 0.2979 1.9920 7.1330 19 1 -0.5352 3.1140 6.6306 20 1 0.3414 2.0337 8.6168 21 1 1.6757 2.1184 6.5937 22 6 0.6320 0.2118 2.9786 23 1 -0.3633 0.4769 0.9104 24 1 -0.3633 0.5499 -0.8681 25 1 -0.3633 -1.0268 -0.0421 26 1 1.3275 -1.4890 -1.5756 27 1 2.3438 -0.0836 -2.0178 28 1 3.1910 -2.5938 -0.8039 29 1 4.2070 -1.1899 -1.2472 30 1 4.1074 -0.2806 0.9094 31 1 3.7711 -1.9759 1.3782 32 1 3.9214 -0.3414 3.4175 33 1 2.6953 -1.6438 3.5187 34 1 2.9150 0.9071 5.1127 35 1 2.2452 -0.6762 5.5980 36 1 -1.4651 0.0634 8.2521 37 1 0.1082 -0.7403 2.8928 38 1 0.0682 1.0042 2.4865 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260956774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = -13.815950 kcal Electronic energy + Delta-G solvation = -16060.372456 eV Core-core repulsion = 13708.660196 eV Total energy + Delta-G solvation = -2351.712260 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.34112 -36.55251 -32.56795 -31.37189 -30.95430 -28.12871 -26.76674 -25.39816 -23.36238 -21.22273 -20.03445 -19.48611 -18.61303 -16.82112 -15.82977 -15.50046 -14.80748 -14.30080 -14.09854 -13.17307 -12.99103 -12.80773 -12.38914 -12.26582 -12.04412 -11.77077 -11.58617 -11.16851 -11.10644 -10.75231 -10.69850 -10.48279 -10.25312 -10.20193 -9.94348 -9.81507 -9.60871 -9.32402 -8.83587 -8.45246 -8.14996 -6.00460 -3.97116 3.32584 3.40852 3.43915 4.20836 4.48723 4.70833 4.80077 5.04193 5.23120 5.30101 5.47686 5.54948 5.55615 5.62098 5.72264 5.80506 5.81919 5.89305 6.00808 6.08151 6.08809 6.17690 6.27392 6.38626 6.46541 6.54376 6.58472 6.74261 6.86991 6.98087 7.05953 7.19726 7.38046 7.47546 7.65030 7.89933 8.63453 9.06255 9.63653 11.13076 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045923 B = 0.007114 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.575681 B = 3934.914314 C = 4157.430536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 H 0.045 0.955 4 C -0.120 4.120 5 C -0.124 4.124 6 C 0.033 3.967 7 N -0.496 5.496 8 C 0.063 3.937 9 H 0.039 0.961 10 C -0.110 4.110 11 C -0.122 4.122 12 C 0.011 3.989 13 H 0.025 0.975 14 C -0.503 4.503 15 H 0.073 0.927 16 C 0.067 3.933 17 N -0.904 5.904 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.264 1.264 22 C -0.091 4.091 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.069 0.931 34 H 0.036 0.964 35 H 0.067 0.933 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.590 0.827 -14.718 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.049 4.049 3 H 0.063 0.937 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.095 4.095 7 N -0.220 5.220 8 C -0.045 4.045 9 H 0.057 0.943 10 C -0.148 4.148 11 C -0.161 4.161 12 C -0.008 4.008 13 H 0.043 0.957 14 C -0.541 4.541 15 H 0.091 0.909 16 C -0.133 4.133 17 N -0.542 5.542 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.218 1.218 21 H -0.188 1.188 22 C -0.129 4.129 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.167 0.366 -14.389 16.550 hybrid contribution 0.898 1.667 0.324 1.921 sum 9.065 2.033 -14.066 16.857 Atomic orbital electron populations 1.21920 0.93792 1.02516 1.02105 1.22619 0.96470 0.95416 0.90431 0.93706 1.22364 0.97496 0.98988 0.96961 1.22288 0.97602 1.00802 0.95557 1.23036 0.91039 1.00058 0.95366 1.65496 1.16648 1.37490 1.02402 1.22959 0.99002 0.93186 0.89403 0.94330 1.22365 0.96746 1.00577 0.95078 1.22562 0.98092 0.99117 0.96283 1.19691 0.92935 0.95734 0.92459 0.95672 1.21116 1.21547 1.11826 0.99564 0.90862 1.25055 0.94787 0.97020 0.96474 1.69918 1.36588 1.38625 1.09112 0.86908 0.80556 0.84913 0.77395 1.20429 1.21756 1.18822 1.22460 0.93202 1.01162 0.96080 0.90981 0.93148 0.91990 0.91061 0.91967 0.91246 0.91936 0.94412 0.90251 0.93785 0.91236 0.94565 0.91384 0.92838 0.90795 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.09 37.16 0.34 -1.64 16 2 C 0.06 0.81 2.88 -66.07 -0.19 0.62 16 3 H 0.04 0.62 7.78 -51.93 -0.40 0.22 16 4 C -0.12 -1.34 6.55 -25.34 -0.17 -1.51 16 5 C -0.12 -1.36 7.00 -25.34 -0.18 -1.54 16 6 C 0.03 0.44 5.54 -2.16 -0.01 0.43 16 7 N -0.50 -7.74 4.98 -211.87 -1.05 -8.80 16 8 C 0.06 1.11 2.46 -65.74 -0.16 0.94 16 9 H 0.04 0.67 7.82 -51.93 -0.41 0.27 16 10 C -0.11 -1.99 5.28 -25.07 -0.13 -2.12 16 11 C -0.12 -2.62 5.84 -25.62 -0.15 -2.77 16 12 C 0.01 0.27 2.35 -90.65 -0.21 0.05 16 13 H 0.03 0.60 5.97 -51.93 -0.31 0.29 16 14 C -0.50 -14.18 8.62 -34.44 -0.30 -14.48 16 15 H 0.07 2.26 7.80 -52.49 -0.41 1.85 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.90 -27.93 13.96 55.43 0.77 -27.16 16 18 Si 0.87 21.82 26.76 -169.99 -4.55 17.27 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.28 6.30 56.52 0.36 -5.92 16 22 C -0.09 -1.86 4.46 -25.09 -0.11 -1.98 16 23 H 0.07 1.10 4.98 -51.93 -0.26 0.84 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.07 0.78 7.83 -51.93 -0.41 0.37 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.04 0.49 8.00 -51.93 -0.42 0.08 16 31 H 0.08 1.04 7.95 -51.93 -0.41 0.63 16 32 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.04 0.74 7.76 -51.93 -0.40 0.34 16 35 H 0.07 1.57 7.67 -51.93 -0.40 1.17 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.07 1.63 7.68 -51.93 -0.40 1.23 16 38 H 0.05 0.91 6.42 -51.93 -0.33 0.58 16 LS Contribution 284.62 15.07 4.29 4.29 Total: -1.00 -29.61 284.62 -8.60 -38.21 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -6.69 Total: -1.69 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -1.37 Total: -22.13 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.28 Total: -35.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.55 Total: 17.27 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.61 -8.60 -38.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.396 kcal (2) G-P(sol) polarization free energy of solvation -29.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds