Wall clock time and date at job start Mon Mar 30 2020 03:25:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.08995 * 110.36811 * 2 1
4 4 C 1.54384 * 110.50782 * 237.58155 * 2 1 3
5 5 C 1.54268 * 105.05990 * 217.31923 * 4 2 1
6 6 C 1.54383 * 105.05900 * 359.97438 * 5 4 2
7 7 N 1.48561 * 110.41170 * 122.35186 * 2 1 3
8 8 C 1.46897 * 111.00199 * 277.93575 * 7 2 1
9 9 H 1.09002 * 110.81529 * 315.16691 * 8 7 2
10 10 C 1.54887 * 110.76020 * 191.82878 * 8 7 2
11 11 C 1.54264 * 104.19855 * 203.73979 * 10 8 7
12 12 C 1.53872 * 106.59614 * 23.60932 * 11 10 8
13 13 H 1.09001 * 110.03268 * 240.66393 * 12 11 10
14 14 C 1.50707 * 110.03335 * 119.28294 * 12 11 10
15 15 H 1.07997 * 120.00071 * 266.00750 * 14 12 11
16 16 C 1.37875 * 119.99667 * 86.28261 * 14 12 11
17 17 N 1.31514 * 119.99977 * 185.02875 * 16 14 12
18 18 Si 1.86796 * 120.00121 * 5.02858 * 16 14 12
19 19 H 1.48504 * 109.47385 * 84.86959 * 18 16 14
20 20 H 1.48501 * 109.47143 * 204.86745 * 18 16 14
21 21 H 1.48501 * 109.47379 * 324.86767 * 18 16 14
22 22 C 1.54268 * 106.60147 * 359.97438 * 12 11 10
23 23 H 1.09003 * 109.46682 * 297.64820 * 1 2 3
24 24 H 1.08995 * 109.47105 * 57.64868 * 1 2 3
25 25 H 1.08995 * 109.47103 * 177.65082 * 1 2 3
26 26 H 1.08998 * 110.32536 * 336.21428 * 4 2 1
27 27 H 1.09001 * 110.32375 * 98.42435 * 4 2 1
28 28 H 1.08995 * 110.32018 * 118.89472 * 5 4 2
29 29 H 1.08993 * 110.32409 * 241.00530 * 5 4 2
30 30 H 1.08998 * 110.41655 * 265.07316 * 6 5 4
31 31 H 1.09003 * 110.41139 * 142.62676 * 6 5 4
32 32 H 1.09000 * 110.48591 * 85.05938 * 10 8 7
33 33 H 1.09000 * 110.48557 * 322.42055 * 10 8 7
34 34 H 1.08995 * 110.03441 * 264.32547 * 11 10 8
35 35 H 1.08996 * 110.03263 * 142.88964 * 11 10 8
36 36 H 0.96997 * 119.99969 * 180.02562 * 17 16 14
37 37 H 1.09004 * 110.48535 * 95.06821 * 22 12 11
38 38 H 1.08995 * 110.48757 * 217.71356 * 22 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9094 1.0218 0.0000
4 6 2.0709 -0.7752 -1.2206
5 6 3.3209 -1.5163 -0.7030
6 6 3.4305 -1.1261 0.7866
7 7 2.0481 -0.7451 1.1762
8 6 2.0543 0.1030 2.3757
9 1 2.4540 1.0915 2.1491
10 6 2.8595 -0.5663 3.5171
11 6 2.2915 0.0684 4.8033
12 6 0.8751 0.5627 4.4610
13 1 0.8110 1.6412 4.6052
14 6 -0.1393 -0.1351 5.3302
15 1 -0.6323 -1.0277 4.9745
16 6 -0.4421 0.3695 6.5771
17 7 -1.2518 -0.2917 7.3751
18 14 0.2979 1.9920 7.1330
19 1 -0.5352 3.1140 6.6306
20 1 0.3414 2.0337 8.6168
21 1 1.6757 2.1184 6.5937
22 6 0.6320 0.2118 2.9786
23 1 -0.3633 0.4769 0.9104
24 1 -0.3633 0.5499 -0.8681
25 1 -0.3633 -1.0268 -0.0421
26 1 1.3275 -1.4890 -1.5756
27 1 2.3438 -0.0836 -2.0178
28 1 3.1910 -2.5938 -0.8039
29 1 4.2070 -1.1899 -1.2472
30 1 4.1074 -0.2806 0.9094
31 1 3.7711 -1.9759 1.3782
32 1 3.9214 -0.3414 3.4175
33 1 2.6953 -1.6438 3.5187
34 1 2.9150 0.9071 5.1127
35 1 2.2452 -0.6762 5.5980
36 1 -1.4651 0.0634 8.2521
37 1 0.1082 -0.7403 2.8928
38 1 0.0682 1.0042 2.4865
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260956774.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:25:33
Heat of formation + Delta-G solvation = -32.355853 kcal
Electronic energy + Delta-G solvation = -16061.176407 eV
Core-core repulsion = 13708.660196 eV
Total energy + Delta-G solvation = -2352.516210 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.56198 -38.05628 -34.60501 -32.47923 -32.34108 -29.83160 -28.34414 -26.42753
-25.27192 -22.33927 -21.17599 -20.89633 -20.33082 -18.86558 -17.13757 -16.82421
-16.25002 -15.91415 -15.32584 -14.84358 -14.51797 -14.13758 -14.01913 -13.67377
-13.36832 -12.98469 -12.89237 -12.76918 -12.47293 -12.13479 -12.04576 -11.91139
-11.71273 -11.58463 -11.54655 -11.30426 -11.17754 -11.09617 -10.85292 -10.65522
-9.31761 -8.25991 -6.27517 1.35131 1.36254 1.48220 2.37605 3.05146
3.10350 3.70496 3.74522 4.03217 4.08399 4.15571 4.22863 4.32954
4.53969 4.57288 4.62066 4.72228 4.78650 4.85962 4.89406 4.93256
4.97020 5.03204 5.08856 5.12910 5.17108 5.28943 5.30406 5.36620
5.41988 5.52076 5.56242 5.66649 5.84401 6.11091 6.29844 6.38958
6.78868 7.36504 8.91357
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.045923 B = 0.007114 C = 0.006733
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 609.575681 B = 3934.914314 C = 4157.430536
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C 0.054 3.946
3 H 0.048 0.952
4 C -0.115 4.115
5 C -0.119 4.119
6 C 0.030 3.970
7 N -0.516 5.516
8 C 0.077 3.923
9 H 0.051 0.949
10 C -0.100 4.100
11 C -0.120 4.120
12 C 0.004 3.996
13 H 0.028 0.972
14 C -0.507 4.507
15 H 0.026 0.974
16 C 0.006 3.994
17 N -0.955 5.955
18 Si 0.942 3.058
19 H -0.269 1.269
20 H -0.290 1.290
21 H -0.241 1.241
22 C -0.085 4.085
23 H 0.048 0.952
24 H 0.072 0.928
25 H 0.051 0.949
26 H 0.071 0.929
27 H 0.083 0.917
28 H 0.071 0.929
29 H 0.084 0.916
30 H 0.045 0.955
31 H 0.076 0.924
32 H 0.075 0.925
33 H 0.058 0.942
34 H 0.052 0.948
35 H 0.042 0.958
36 H 0.264 0.736
37 H 0.046 0.954
38 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.951 2.410 -16.657 20.079
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.054 4.054
3 H 0.066 0.934
4 C -0.153 4.153
5 C -0.157 4.157
6 C -0.098 4.098
7 N -0.241 5.241
8 C -0.032 4.032
9 H 0.069 0.931
10 C -0.138 4.138
11 C -0.159 4.159
12 C -0.015 4.015
13 H 0.046 0.954
14 C -0.545 4.545
15 H 0.044 0.956
16 C -0.190 4.190
17 N -0.595 5.595
18 Si 0.766 3.234
19 H -0.194 1.194
20 H -0.216 1.216
21 H -0.164 1.164
22 C -0.123 4.123
23 H 0.067 0.933
24 H 0.091 0.909
25 H 0.071 0.929
26 H 0.090 0.910
27 H 0.102 0.898
28 H 0.090 0.910
29 H 0.103 0.897
30 H 0.064 0.936
31 H 0.094 0.906
32 H 0.093 0.907
33 H 0.077 0.923
34 H 0.071 0.929
35 H 0.060 0.940
36 H 0.073 0.927
37 H 0.064 0.936
38 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 10.542 1.943 -16.359 19.559
hybrid contribution 0.083 1.074 0.887 1.395
sum 10.625 3.017 -15.472 19.010
Atomic orbital electron populations
1.21896 0.94329 1.01982 1.01950 1.22726 0.96109 0.95825 0.90733
0.93362 1.22352 0.97515 0.99156 0.96278 1.22285 0.98391 1.00997
0.94027 1.23121 0.89566 1.00195 0.96923 1.65430 1.18681 1.37474
1.02470 1.22712 0.96176 0.94110 0.90212 0.93149 1.22272 0.98447
0.99669 0.93415 1.22411 0.96964 0.99173 0.97352 1.19733 0.92961
0.95247 0.93565 0.95361 1.21372 1.22138 1.10553 1.00410 0.95570
1.25967 0.95396 1.01087 0.96530 1.70079 1.38786 1.40899 1.09778
0.85818 0.80856 0.79824 0.76901 1.19390 1.21605 1.16373 1.22292
0.95482 0.99916 0.94570 0.93265 0.90880 0.92937 0.91021 0.89840
0.91035 0.89692 0.93631 0.90580 0.90686 0.92312 0.92934 0.93955
0.92744 0.93553 0.92644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.74 9.09 71.98 0.65 -3.09 16
2 C 0.05 1.35 2.88 45.06 0.13 1.48 16
3 H 0.05 1.18 7.78 -2.39 -0.02 1.16 16
4 C -0.11 -2.19 6.55 31.49 0.21 -1.98 16
5 C -0.12 -2.18 7.00 31.49 0.22 -1.96 16
6 C 0.03 0.69 5.54 86.45 0.48 1.17 16
7 N -0.52 -15.13 4.98 -824.24 -4.10 -19.24 16
8 C 0.08 2.56 2.46 46.20 0.11 2.67 16
9 H 0.05 1.59 7.82 -2.39 -0.02 1.57 16
10 C -0.10 -3.44 5.28 31.67 0.17 -3.28 16
11 C -0.12 -5.04 5.84 31.32 0.18 -4.85 16
12 C 0.00 0.20 2.35 -10.81 -0.03 0.18 16
13 H 0.03 1.31 5.97 -2.39 -0.01 1.30 16
14 C -0.51 -29.71 8.62 25.60 0.22 -29.49 16
15 H 0.03 1.72 7.80 -2.91 -0.02 1.70 16
16 C 0.01 0.37 5.47 84.65 0.46 0.83 16
17 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16
18 Si 0.94 44.98 26.76 68.60 1.84 46.82 16
19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16
20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16
21 H -0.24 -10.49 6.30 99.48 0.63 -9.86 16
22 C -0.08 -3.47 4.46 31.66 0.14 -3.33 16
23 H 0.05 1.49 4.98 -2.39 -0.01 1.47 16
24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16
25 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16
26 H 0.07 1.36 7.83 -2.39 -0.02 1.35 16
27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16
29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16
30 H 0.05 1.01 8.00 -2.39 -0.02 0.99 16
31 H 0.08 1.82 7.95 -2.39 -0.02 1.80 16
32 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16
33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16
34 H 0.05 2.01 7.76 -2.39 -0.02 1.99 16
35 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16
36 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16
37 H 0.05 2.13 7.68 -2.38 -0.02 2.11 16
38 H 0.05 2.14 6.42 -2.39 -0.02 2.13 16
Total: -1.00 -65.97 284.62 1.91 -64.07
By element:
Atomic # 1 Polarization: 10.00 SS G_CDS: 0.92 Total: 10.92 kcal
Atomic # 6 Polarization: -44.61 SS G_CDS: 2.95 Total: -41.65 kcal
Atomic # 7 Polarization: -76.34 SS G_CDS: -3.80 Total: -80.15 kcal
Atomic # 14 Polarization: 44.98 SS G_CDS: 1.84 Total: 46.82 kcal
Total: -65.97 1.91 -64.07 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260956774.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.712 kcal
(2) G-P(sol) polarization free energy of solvation -65.973 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.356 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds