Wall clock time and date at job start Mon Mar 30 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.36811 * 2 1 4 4 C 1.54384 * 110.50782 * 237.58155 * 2 1 3 5 5 C 1.54268 * 105.05990 * 217.31923 * 4 2 1 6 6 C 1.54383 * 105.05900 * 359.97438 * 5 4 2 7 7 N 1.48561 * 110.41170 * 122.35186 * 2 1 3 8 8 C 1.46897 * 111.00199 * 277.93575 * 7 2 1 9 9 H 1.09002 * 110.81529 * 315.16691 * 8 7 2 10 10 C 1.54887 * 110.76020 * 191.82878 * 8 7 2 11 11 C 1.54264 * 104.19855 * 203.73979 * 10 8 7 12 12 C 1.53872 * 106.59614 * 23.60932 * 11 10 8 13 13 H 1.09001 * 110.03268 * 240.66393 * 12 11 10 14 14 C 1.50707 * 110.03335 * 119.28294 * 12 11 10 15 15 H 1.07997 * 120.00071 * 266.00750 * 14 12 11 16 16 C 1.37875 * 119.99667 * 86.28261 * 14 12 11 17 17 N 1.31514 * 119.99977 * 185.02875 * 16 14 12 18 18 Si 1.86796 * 120.00121 * 5.02858 * 16 14 12 19 19 H 1.48504 * 109.47385 * 84.86959 * 18 16 14 20 20 H 1.48501 * 109.47143 * 204.86745 * 18 16 14 21 21 H 1.48501 * 109.47379 * 324.86767 * 18 16 14 22 22 C 1.54268 * 106.60147 * 359.97438 * 12 11 10 23 23 H 1.09003 * 109.46682 * 297.64820 * 1 2 3 24 24 H 1.08995 * 109.47105 * 57.64868 * 1 2 3 25 25 H 1.08995 * 109.47103 * 177.65082 * 1 2 3 26 26 H 1.08998 * 110.32536 * 336.21428 * 4 2 1 27 27 H 1.09001 * 110.32375 * 98.42435 * 4 2 1 28 28 H 1.08995 * 110.32018 * 118.89472 * 5 4 2 29 29 H 1.08993 * 110.32409 * 241.00530 * 5 4 2 30 30 H 1.08998 * 110.41655 * 265.07316 * 6 5 4 31 31 H 1.09003 * 110.41139 * 142.62676 * 6 5 4 32 32 H 1.09000 * 110.48591 * 85.05938 * 10 8 7 33 33 H 1.09000 * 110.48557 * 322.42055 * 10 8 7 34 34 H 1.08995 * 110.03441 * 264.32547 * 11 10 8 35 35 H 1.08996 * 110.03263 * 142.88964 * 11 10 8 36 36 H 0.96997 * 119.99969 * 180.02562 * 17 16 14 37 37 H 1.09004 * 110.48535 * 95.06821 * 22 12 11 38 38 H 1.08995 * 110.48757 * 217.71356 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9094 1.0218 0.0000 4 6 2.0709 -0.7752 -1.2206 5 6 3.3209 -1.5163 -0.7030 6 6 3.4305 -1.1261 0.7866 7 7 2.0481 -0.7451 1.1762 8 6 2.0543 0.1030 2.3757 9 1 2.4540 1.0915 2.1491 10 6 2.8595 -0.5663 3.5171 11 6 2.2915 0.0684 4.8033 12 6 0.8751 0.5627 4.4610 13 1 0.8110 1.6412 4.6052 14 6 -0.1393 -0.1351 5.3302 15 1 -0.6323 -1.0277 4.9745 16 6 -0.4421 0.3695 6.5771 17 7 -1.2518 -0.2917 7.3751 18 14 0.2979 1.9920 7.1330 19 1 -0.5352 3.1140 6.6306 20 1 0.3414 2.0337 8.6168 21 1 1.6757 2.1184 6.5937 22 6 0.6320 0.2118 2.9786 23 1 -0.3633 0.4769 0.9104 24 1 -0.3633 0.5499 -0.8681 25 1 -0.3633 -1.0268 -0.0421 26 1 1.3275 -1.4890 -1.5756 27 1 2.3438 -0.0836 -2.0178 28 1 3.1910 -2.5938 -0.8039 29 1 4.2070 -1.1899 -1.2472 30 1 4.1074 -0.2806 0.9094 31 1 3.7711 -1.9759 1.3782 32 1 3.9214 -0.3414 3.4175 33 1 2.6953 -1.6438 3.5187 34 1 2.9150 0.9071 5.1127 35 1 2.2452 -0.6762 5.5980 36 1 -1.4651 0.0634 8.2521 37 1 0.1082 -0.7403 2.8928 38 1 0.0682 1.0042 2.4865 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260956774.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:33 Heat of formation + Delta-G solvation = -32.355853 kcal Electronic energy + Delta-G solvation = -16061.176407 eV Core-core repulsion = 13708.660196 eV Total energy + Delta-G solvation = -2352.516210 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.56198 -38.05628 -34.60501 -32.47923 -32.34108 -29.83160 -28.34414 -26.42753 -25.27192 -22.33927 -21.17599 -20.89633 -20.33082 -18.86558 -17.13757 -16.82421 -16.25002 -15.91415 -15.32584 -14.84358 -14.51797 -14.13758 -14.01913 -13.67377 -13.36832 -12.98469 -12.89237 -12.76918 -12.47293 -12.13479 -12.04576 -11.91139 -11.71273 -11.58463 -11.54655 -11.30426 -11.17754 -11.09617 -10.85292 -10.65522 -9.31761 -8.25991 -6.27517 1.35131 1.36254 1.48220 2.37605 3.05146 3.10350 3.70496 3.74522 4.03217 4.08399 4.15571 4.22863 4.32954 4.53969 4.57288 4.62066 4.72228 4.78650 4.85962 4.89406 4.93256 4.97020 5.03204 5.08856 5.12910 5.17108 5.28943 5.30406 5.36620 5.41988 5.52076 5.56242 5.66649 5.84401 6.11091 6.29844 6.38958 6.78868 7.36504 8.91357 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.045923 B = 0.007114 C = 0.006733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.575681 B = 3934.914314 C = 4157.430536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 H 0.048 0.952 4 C -0.115 4.115 5 C -0.119 4.119 6 C 0.030 3.970 7 N -0.516 5.516 8 C 0.077 3.923 9 H 0.051 0.949 10 C -0.100 4.100 11 C -0.120 4.120 12 C 0.004 3.996 13 H 0.028 0.972 14 C -0.507 4.507 15 H 0.026 0.974 16 C 0.006 3.994 17 N -0.955 5.955 18 Si 0.942 3.058 19 H -0.269 1.269 20 H -0.290 1.290 21 H -0.241 1.241 22 C -0.085 4.085 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.052 0.948 35 H 0.042 0.958 36 H 0.264 0.736 37 H 0.046 0.954 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.951 2.410 -16.657 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.054 4.054 3 H 0.066 0.934 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.098 4.098 7 N -0.241 5.241 8 C -0.032 4.032 9 H 0.069 0.931 10 C -0.138 4.138 11 C -0.159 4.159 12 C -0.015 4.015 13 H 0.046 0.954 14 C -0.545 4.545 15 H 0.044 0.956 16 C -0.190 4.190 17 N -0.595 5.595 18 Si 0.766 3.234 19 H -0.194 1.194 20 H -0.216 1.216 21 H -0.164 1.164 22 C -0.123 4.123 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.064 0.936 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.542 1.943 -16.359 19.559 hybrid contribution 0.083 1.074 0.887 1.395 sum 10.625 3.017 -15.472 19.010 Atomic orbital electron populations 1.21896 0.94329 1.01982 1.01950 1.22726 0.96109 0.95825 0.90733 0.93362 1.22352 0.97515 0.99156 0.96278 1.22285 0.98391 1.00997 0.94027 1.23121 0.89566 1.00195 0.96923 1.65430 1.18681 1.37474 1.02470 1.22712 0.96176 0.94110 0.90212 0.93149 1.22272 0.98447 0.99669 0.93415 1.22411 0.96964 0.99173 0.97352 1.19733 0.92961 0.95247 0.93565 0.95361 1.21372 1.22138 1.10553 1.00410 0.95570 1.25967 0.95396 1.01087 0.96530 1.70079 1.38786 1.40899 1.09778 0.85818 0.80856 0.79824 0.76901 1.19390 1.21605 1.16373 1.22292 0.95482 0.99916 0.94570 0.93265 0.90880 0.92937 0.91021 0.89840 0.91035 0.89692 0.93631 0.90580 0.90686 0.92312 0.92934 0.93955 0.92744 0.93553 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 9.09 71.98 0.65 -3.09 16 2 C 0.05 1.35 2.88 45.06 0.13 1.48 16 3 H 0.05 1.18 7.78 -2.39 -0.02 1.16 16 4 C -0.11 -2.19 6.55 31.49 0.21 -1.98 16 5 C -0.12 -2.18 7.00 31.49 0.22 -1.96 16 6 C 0.03 0.69 5.54 86.45 0.48 1.17 16 7 N -0.52 -15.13 4.98 -824.24 -4.10 -19.24 16 8 C 0.08 2.56 2.46 46.20 0.11 2.67 16 9 H 0.05 1.59 7.82 -2.39 -0.02 1.57 16 10 C -0.10 -3.44 5.28 31.67 0.17 -3.28 16 11 C -0.12 -5.04 5.84 31.32 0.18 -4.85 16 12 C 0.00 0.20 2.35 -10.81 -0.03 0.18 16 13 H 0.03 1.31 5.97 -2.39 -0.01 1.30 16 14 C -0.51 -29.71 8.62 25.60 0.22 -29.49 16 15 H 0.03 1.72 7.80 -2.91 -0.02 1.70 16 16 C 0.01 0.37 5.47 84.65 0.46 0.83 16 17 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 18 Si 0.94 44.98 26.76 68.60 1.84 46.82 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.24 -10.49 6.30 99.48 0.63 -9.86 16 22 C -0.08 -3.47 4.46 31.66 0.14 -3.33 16 23 H 0.05 1.49 4.98 -2.39 -0.01 1.47 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 26 H 0.07 1.36 7.83 -2.39 -0.02 1.35 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.01 8.00 -2.39 -0.02 0.99 16 31 H 0.08 1.82 7.95 -2.39 -0.02 1.80 16 32 H 0.07 2.14 8.10 -2.39 -0.02 2.12 16 33 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.05 2.01 7.76 -2.39 -0.02 1.99 16 35 H 0.04 1.96 7.67 -2.39 -0.02 1.94 16 36 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 37 H 0.05 2.13 7.68 -2.38 -0.02 2.11 16 38 H 0.05 2.14 6.42 -2.39 -0.02 2.13 16 Total: -1.00 -65.97 284.62 1.91 -64.07 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.92 Total: 10.92 kcal Atomic # 6 Polarization: -44.61 SS G_CDS: 2.95 Total: -41.65 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -3.80 Total: -80.15 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.84 Total: 46.82 kcal Total: -65.97 1.91 -64.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260956774.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.712 kcal (2) G-P(sol) polarization free energy of solvation -65.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds