Wall clock time and date at job start Mon Mar 30 2020 02:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 14 14 C 1.48477 * 111.00240 * 62.38887 * 13 3 2 15 15 C 1.54918 * 103.21874 * 159.83252 * 14 13 3 16 16 C 1.54450 * 102.94211 * 322.29090 * 15 14 13 17 17 H 1.08998 * 112.39791 * 260.64226 * 16 15 14 18 18 C 1.54111 * 109.03388 * 136.23048 * 16 15 14 19 19 C 1.54876 * 104.15758 * 222.51883 * 18 16 15 20 20 C 1.54823 * 102.74073 * 38.45826 * 19 18 16 21 21 C 1.47922 * 110.99882 * 180.02562 * 13 3 2 22 22 H 1.08998 * 111.34787 * 336.24098 * 21 13 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.66864 * 278.26903 * 14 13 3 30 30 H 1.09003 * 110.66479 * 41.39627 * 14 13 3 31 31 H 1.09007 * 110.72132 * 203.93070 * 15 14 13 32 32 H 1.09001 * 110.87785 * 80.73011 * 15 14 13 33 33 H 1.09003 * 110.49496 * 341.18832 * 18 16 15 34 34 H 1.08999 * 110.48930 * 103.84859 * 18 16 15 35 35 H 1.09004 * 110.75845 * 156.76961 * 19 18 16 36 36 H 1.08999 * 110.76279 * 279.95308 * 19 18 16 37 37 H 1.09001 * 110.44521 * 203.46795 * 20 19 18 38 38 H 1.08997 * 110.44263 * 80.93797 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6514 2.0994 1.2552 14 6 2.2729 1.4254 2.4231 15 6 2.2044 2.5044 3.5326 16 6 2.4904 3.8118 2.7617 17 1 3.5261 4.1359 2.8633 18 6 1.5045 4.8988 3.2326 19 6 1.0676 5.6058 1.9257 20 6 0.9557 4.4313 0.9232 21 6 2.1281 3.4992 1.2906 22 1 2.9837 3.6438 0.6311 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 1.6996 0.5433 2.7083 30 1 3.3080 1.1597 2.2080 31 1 2.9686 2.3281 4.2897 32 1 1.2137 2.5329 3.9862 33 1 0.6452 4.4461 3.7273 34 1 2.0027 5.6028 3.8992 35 1 0.1027 6.0960 2.0557 36 1 1.8228 6.3224 1.6030 37 1 1.0626 4.7923 -0.0997 38 1 0.0045 3.9138 1.0477 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307135065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:22 Heat of formation + Delta-G solvation = -13.741092 kcal Electronic energy + Delta-G solvation = -16547.734525 eV Core-core repulsion = 14196.025511 eV Total energy + Delta-G solvation = -2351.709014 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.25911 -35.48175 -32.80509 -31.47717 -30.26828 -27.06743 -26.44152 -25.26862 -22.78946 -21.06304 -20.18826 -18.98117 -18.42328 -16.26295 -15.79111 -14.82626 -14.50374 -13.81257 -13.53176 -13.05070 -12.71841 -12.54070 -12.45209 -11.77729 -11.48256 -11.25882 -10.92060 -10.79783 -10.62556 -10.53996 -10.44175 -10.32726 -10.07630 -10.01771 -9.88919 -9.76400 -9.59499 -9.33756 -9.00933 -8.32850 -7.13653 -5.96626 -4.09360 3.28113 3.33513 3.35931 4.40541 4.93849 5.09317 5.12419 5.27178 5.49852 5.70067 5.80459 5.83880 5.98196 6.11187 6.19772 6.24807 6.33657 6.37922 6.41416 6.49108 6.50842 6.56608 6.67600 6.72959 6.76153 6.82892 6.97902 7.07101 7.12263 7.23354 7.39109 7.65362 7.78099 8.04001 8.20743 8.34758 8.49032 9.01771 9.57105 11.02524 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.010408 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.969382 B = 2689.651358 C = 3089.433073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.509 5.509 14 C 0.040 3.960 15 C -0.119 4.119 16 C -0.102 4.102 17 H 0.070 0.930 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.107 4.107 21 C 0.069 3.931 22 H 0.073 0.927 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.030 0.970 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 5.505 7.868 10.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.098 3.902 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.233 5.233 14 C -0.088 4.088 15 C -0.157 4.157 16 C -0.121 4.121 17 H 0.089 0.911 18 C -0.150 4.150 19 C -0.162 4.162 20 C -0.145 4.145 21 C -0.040 4.040 22 H 0.091 0.909 23 H 0.043 0.957 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.898 5.365 7.686 10.151 hybrid contribution 2.060 -0.080 -0.298 2.083 sum -1.838 5.285 7.388 9.268 Atomic orbital electron populations 1.21709 0.98923 0.98325 1.00558 1.21572 0.92193 0.99263 1.01858 1.19385 0.92929 0.91191 0.86701 0.94465 1.21701 0.92879 1.38035 1.05388 0.92583 1.24912 0.97677 0.95105 0.95736 1.69869 1.34797 1.38258 1.09381 0.86768 0.86379 0.78193 0.77324 1.20385 1.21266 1.20383 1.65145 1.53428 1.00623 1.04067 1.23078 0.99196 0.96053 0.90486 1.22607 1.00433 0.95280 0.97343 1.22559 0.98296 0.95153 0.96106 0.91149 1.22411 0.98541 0.97144 0.96907 1.22493 1.00133 0.97691 0.95916 1.22315 0.99693 0.94909 0.97630 1.22913 0.96138 0.90576 0.94375 0.90925 0.95689 0.94238 0.93425 0.95082 0.89096 0.92889 0.91925 0.92497 0.92733 0.91741 0.91699 0.92869 0.92432 0.92220 0.92713 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.80 37.16 0.36 -2.50 16 2 C -0.11 -2.64 5.14 -26.73 -0.14 -2.78 16 3 C 0.20 5.05 1.81 -68.86 -0.12 4.93 16 4 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.54 -14.37 6.35 -34.44 -0.22 -14.59 16 6 H 0.06 1.50 6.11 -52.49 -0.32 1.18 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -24.90 11.29 55.43 0.63 -24.28 16 9 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.51 -10.78 4.22 -214.90 -0.91 -11.68 16 14 C 0.04 0.79 5.28 -1.94 -0.01 0.78 16 15 C -0.12 -1.94 6.60 -24.96 -0.16 -2.10 16 16 C -0.10 -1.69 3.82 -88.39 -0.34 -2.03 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 18 C -0.11 -1.58 6.37 -25.16 -0.16 -1.74 16 19 C -0.12 -1.76 6.90 -24.78 -0.17 -1.93 16 20 C -0.11 -1.85 6.51 -25.13 -0.16 -2.01 16 21 C 0.07 1.35 2.87 -65.62 -0.19 1.16 16 22 H 0.07 1.63 6.48 -51.93 -0.34 1.30 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 26 H 0.03 0.73 6.75 -51.93 -0.35 0.38 16 27 H 0.09 2.43 5.95 -51.93 -0.31 2.12 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.06 1.21 7.55 -51.93 -0.39 0.82 16 30 H 0.06 1.25 6.08 -51.93 -0.32 0.94 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.00 7.22 -51.93 -0.37 0.62 16 33 H 0.06 0.89 7.21 -51.93 -0.37 0.52 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.29 7.97 -51.93 -0.41 0.88 16 LS Contribution 283.78 15.07 4.28 4.28 Total: -1.00 -26.86 283.78 -8.96 -35.82 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.53 Total: 0.80 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -1.41 Total: -21.04 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: -0.28 Total: -35.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.86 -8.96 -35.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307135065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.081 kcal (2) G-P(sol) polarization free energy of solvation -26.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds