Wall clock time and date at job start Mon Mar 30 2020 02:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46900 * 109.47303 * 64.99966 * 3 2 1 14 14 C 1.48477 * 111.00240 * 62.38887 * 13 3 2 15 15 C 1.54918 * 103.21874 * 159.83252 * 14 13 3 16 16 C 1.54450 * 102.94211 * 322.29090 * 15 14 13 17 17 H 1.08998 * 112.39791 * 260.64226 * 16 15 14 18 18 C 1.54111 * 109.03388 * 136.23048 * 16 15 14 19 19 C 1.54876 * 104.15758 * 222.51883 * 18 16 15 20 20 C 1.54823 * 102.74073 * 38.45826 * 19 18 16 21 21 C 1.47922 * 110.99882 * 180.02562 * 13 3 2 22 22 H 1.08998 * 111.34787 * 336.24098 * 21 13 3 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 26 26 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 27 27 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 28 28 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 29 29 H 1.08999 * 110.66864 * 278.26903 * 14 13 3 30 30 H 1.09003 * 110.66479 * 41.39627 * 14 13 3 31 31 H 1.09007 * 110.72132 * 203.93070 * 15 14 13 32 32 H 1.09001 * 110.87785 * 80.73011 * 15 14 13 33 33 H 1.09003 * 110.49496 * 341.18832 * 18 16 15 34 34 H 1.08999 * 110.48930 * 103.84859 * 18 16 15 35 35 H 1.09004 * 110.75845 * 156.76961 * 19 18 16 36 36 H 1.08999 * 110.76279 * 279.95308 * 19 18 16 37 37 H 1.09001 * 110.44521 * 203.46795 * 20 19 18 38 38 H 1.08997 * 110.44263 * 80.93797 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6514 2.0994 1.2552 14 6 2.2729 1.4254 2.4231 15 6 2.2044 2.5044 3.5326 16 6 2.4904 3.8118 2.7617 17 1 3.5261 4.1359 2.8633 18 6 1.5045 4.8988 3.2326 19 6 1.0676 5.6058 1.9257 20 6 0.9557 4.4313 0.9232 21 6 2.1281 3.4992 1.2906 22 1 2.9837 3.6438 0.6311 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5137 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 3.8293 -0.0604 -2.9502 29 1 1.6996 0.5433 2.7083 30 1 3.3080 1.1597 2.2080 31 1 2.9686 2.3281 4.2897 32 1 1.2137 2.5329 3.9862 33 1 0.6452 4.4461 3.7273 34 1 2.0027 5.6028 3.8992 35 1 0.1027 6.0960 2.0557 36 1 1.8228 6.3224 1.6030 37 1 1.0626 4.7923 -0.0997 38 1 0.0045 3.9138 1.0477 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307135065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:21 Heat of formation + Delta-G solvation = -28.360297 kcal Electronic energy + Delta-G solvation = -16548.368461 eV Core-core repulsion = 14196.025511 eV Total energy + Delta-G solvation = -2352.342950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.77071 -37.16889 -34.52296 -33.32068 -31.83507 -28.78573 -27.88157 -26.94991 -24.64309 -22.68786 -21.42191 -20.80076 -19.92446 -18.26744 -17.40784 -16.49530 -16.12695 -15.41048 -15.07045 -14.73185 -14.36622 -14.16600 -13.97733 -13.42957 -13.21206 -13.02603 -12.76534 -12.46743 -12.26585 -12.10275 -11.84948 -11.76985 -11.64643 -11.53498 -11.50164 -11.32653 -11.25069 -11.04351 -10.89842 -10.42328 -8.96134 -8.03598 -6.25199 1.35643 1.36057 1.43519 2.38412 3.14169 3.51847 3.70134 3.83393 4.08887 4.41668 4.47351 4.51421 4.62346 4.69819 4.74231 4.78530 4.85714 4.89899 4.97918 5.00144 5.09279 5.19097 5.20020 5.23308 5.26693 5.37935 5.39586 5.45354 5.50274 5.58410 5.61943 5.64349 5.80616 6.06426 6.21874 6.44102 6.62134 6.98017 7.44386 8.91466 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026065 B = 0.010408 C = 0.009061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.969382 B = 2689.651358 C = 3089.433073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.105 4.105 3 C 0.213 3.787 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.506 5.506 14 C 0.036 3.964 15 C -0.107 4.107 16 C -0.101 4.101 17 H 0.070 0.930 18 C -0.103 4.103 19 C -0.116 4.116 20 C -0.106 4.106 21 C 0.059 3.941 22 H 0.032 0.968 23 H 0.046 0.954 24 H 0.031 0.969 25 H 0.056 0.944 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.040 0.960 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 6.496 9.965 12.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.144 4.144 3 C 0.105 3.895 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.201 1.201 13 N -0.229 5.229 14 C -0.092 4.092 15 C -0.144 4.144 16 C -0.120 4.120 17 H 0.089 0.911 18 C -0.140 4.140 19 C -0.153 4.153 20 C -0.144 4.144 21 C -0.050 4.050 22 H 0.050 0.950 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.076 0.924 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.201 6.364 9.797 12.415 hybrid contribution 2.148 -0.390 -0.974 2.391 sum -2.053 5.974 8.823 10.851 Atomic orbital electron populations 1.21563 0.96298 0.99772 1.00603 1.21417 0.94503 0.98267 1.00200 1.19110 0.91693 0.91421 0.87232 0.98492 1.21925 0.94052 1.37442 1.05143 0.93282 1.25624 1.01746 0.95053 0.95604 1.70001 1.36275 1.39019 1.09764 0.85824 0.81551 0.78175 0.77381 1.19867 1.20850 1.20098 1.65119 1.53324 1.01478 1.03009 1.23110 0.97334 0.97492 0.91261 1.22574 1.02189 0.93297 0.96376 1.22567 0.99277 0.96509 0.93672 0.91111 1.22375 0.98146 0.96508 0.97017 1.22464 1.01700 0.96415 0.94756 1.22268 0.98222 0.95858 0.98093 1.22993 0.95762 0.90073 0.96170 0.94952 0.93517 0.94999 0.92449 0.95174 0.92135 0.92990 0.91598 0.95328 0.90698 0.89966 0.90767 0.90329 0.90089 0.91634 0.94099 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 9.80 71.98 0.71 -4.45 16 2 C -0.11 -5.16 5.14 30.60 0.16 -5.00 16 3 C 0.21 10.92 1.81 44.17 0.08 11.00 16 4 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 5 C -0.55 -30.07 6.35 25.60 0.16 -29.90 16 6 H 0.05 2.71 6.11 -2.91 -0.02 2.69 16 7 C 0.02 1.08 5.29 84.66 0.45 1.53 16 8 N -0.91 -52.98 11.29 21.45 0.24 -52.74 16 9 Si 0.94 44.20 29.54 68.60 2.03 46.23 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.51 -21.63 4.22 -833.81 -3.52 -25.15 16 14 C 0.04 1.41 5.28 86.65 0.46 1.87 16 15 C -0.11 -3.20 6.60 31.74 0.21 -2.99 16 16 C -0.10 -3.14 3.82 -9.35 -0.04 -3.18 16 17 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 18 C -0.10 -2.48 6.37 31.61 0.20 -2.28 16 19 C -0.12 -2.93 6.90 31.86 0.22 -2.71 16 20 C -0.11 -3.61 6.51 31.63 0.21 -3.40 16 21 C 0.06 2.33 2.87 45.71 0.13 2.46 16 22 H 0.03 1.52 6.48 -2.39 -0.02 1.50 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 2.23 7.75 -2.38 -0.02 2.21 16 26 H 0.03 1.44 6.75 -2.39 -0.02 1.42 16 27 H 0.06 3.35 5.95 -2.39 -0.01 3.33 16 28 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.07 2.49 7.55 -2.39 -0.02 2.47 16 30 H 0.03 1.27 6.08 -2.39 -0.01 1.26 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.08 2.22 7.22 -2.39 -0.02 2.20 16 33 H 0.07 1.69 7.21 -2.39 -0.02 1.68 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.07 2.33 7.97 -2.39 -0.02 2.31 16 Total: -1.00 -59.49 283.78 2.70 -56.79 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 1.01 Total: 11.93 kcal Atomic # 6 Polarization: -40.00 SS G_CDS: 2.94 Total: -37.06 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -3.28 Total: -77.89 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -59.49 2.70 -56.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307135065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.426 kcal (2) G-P(sol) polarization free energy of solvation -59.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds