Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 112.85083 * 2 1 4 4 C 1.53779 * 113.69174 * 228.73394 * 2 1 3 5 5 C 1.53781 * 87.08044 * 270.86986 * 4 2 1 6 6 C 1.53774 * 113.61697 * 131.19453 * 2 1 3 7 7 H 1.09003 * 113.61779 * 203.83019 * 6 2 1 8 8 N 1.46905 * 113.61405 * 334.65301 * 6 2 1 9 9 C 1.46901 * 110.99747 * 204.99952 * 8 6 2 10 10 H 1.09004 * 110.05587 * 325.03526 * 9 8 6 11 11 C 1.54266 * 110.03492 * 86.45408 * 9 8 6 12 12 C 1.54891 * 104.31343 * 142.95910 * 11 9 8 13 13 C 1.54892 * 102.74959 * 321.99283 * 12 11 9 14 14 H 1.09001 * 110.48596 * 279.13315 * 13 12 11 15 15 C 1.50691 * 110.48722 * 156.62211 * 13 12 11 16 16 H 1.08002 * 120.00258 * 241.45334 * 15 13 12 17 17 C 1.37875 * 120.00149 * 61.45198 * 15 13 12 18 18 N 1.31513 * 120.00277 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00320 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47249 * 120.00012 * 19 17 15 22 22 H 1.48498 * 109.47256 * 240.00422 * 19 17 15 23 23 C 1.54224 * 110.14194 * 203.47776 * 9 8 6 24 24 H 1.09005 * 109.47164 * 288.80499 * 1 2 3 25 25 H 1.09002 * 109.47561 * 48.79914 * 1 2 3 26 26 H 1.08997 * 109.47252 * 168.80929 * 1 2 3 27 27 H 1.09004 * 113.61143 * 25.41784 * 4 2 1 28 28 H 1.09001 * 113.61714 * 156.32203 * 4 2 1 29 29 H 1.08994 * 113.61774 * 220.01991 * 5 4 2 30 30 H 1.08997 * 113.61170 * 89.11130 * 5 4 2 31 31 H 1.00896 * 111.00032 * 328.94855 * 8 6 2 32 32 H 1.09002 * 110.48609 * 24.21323 * 11 9 8 33 33 H 1.08998 * 110.48769 * 261.70416 * 11 9 8 34 34 H 1.09000 * 110.75322 * 80.30558 * 12 11 9 35 35 H 1.09002 * 110.75658 * 203.67757 * 12 11 9 36 36 H 0.96998 * 120.00589 * 180.02562 * 18 17 15 37 37 H 1.09009 * 110.00234 * 121.44387 * 23 9 8 38 38 H 1.08998 * 110.06034 * 0.06168 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1478 -0.9288 -1.0585 5 6 2.0950 -2.0419 0.0012 6 6 2.1460 -0.9280 1.0602 7 1 3.1580 -0.6468 1.3516 8 7 1.2672 -1.1704 2.2121 9 6 2.0481 -1.5266 3.4043 10 1 2.9205 -2.1142 3.1179 11 6 2.4919 -0.2491 4.1465 12 6 2.3954 -0.6245 5.6461 13 6 1.1201 -1.5021 5.6975 14 1 0.2274 -0.8769 5.7201 15 6 1.1548 -2.4133 6.8971 16 1 1.1486 -3.4848 6.7618 17 6 1.1945 -1.8792 8.1676 18 7 1.2016 -0.5745 8.3326 19 14 1.2369 -3.0088 9.6548 20 1 1.2204 -4.4232 9.2027 21 1 2.4741 -2.7535 10.4353 22 1 0.0503 -2.7478 10.5086 23 6 1.1738 -2.3241 4.3932 24 1 -0.3634 0.3313 0.9728 25 1 -0.3634 0.6769 -0.7732 26 1 -0.3633 -1.0081 -0.1994 27 1 1.4972 -1.1093 -1.9142 28 1 3.1609 -0.6487 -1.3473 29 1 2.9744 -2.6859 0.0023 30 1 1.1595 -2.6012 0.0006 31 1 0.6775 -0.3716 2.3916 32 1 1.8208 0.5784 3.9164 33 1 3.5177 0.0083 3.8830 34 1 3.2698 -1.1953 5.9585 35 1 2.2753 0.2677 6.2607 36 1 1.2300 -0.1987 9.2264 37 1 1.6220 -3.2992 4.5847 38 1 0.1694 -2.4482 3.9883 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307688689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -1.942830 kcal Electronic energy + Delta-G solvation = -15661.913414 eV Core-core repulsion = 13310.716012 eV Total energy + Delta-G solvation = -2351.197403 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.49214 -37.15858 -33.18578 -31.31372 -29.33430 -27.99565 -26.54187 -23.95245 -23.62505 -23.00060 -19.59865 -18.89490 -18.24712 -16.45455 -16.04581 -15.37335 -14.90970 -14.45455 -13.50029 -13.23377 -13.18122 -12.33280 -12.26562 -12.20325 -12.10953 -11.75988 -11.47181 -11.09894 -10.96802 -10.76998 -10.64569 -10.48936 -10.28122 -10.01011 -9.83708 -9.69280 -9.44560 -9.04535 -8.70097 -8.30381 -7.87600 -5.94658 -3.96984 3.32894 3.40907 3.45236 4.48515 4.51352 4.61212 4.70466 5.00984 5.03265 5.37703 5.48002 5.56035 5.61257 5.68861 5.72091 5.81610 5.86994 5.95358 6.00447 6.05863 6.22264 6.33149 6.43652 6.50425 6.63098 6.69509 6.80427 6.94746 7.16442 7.26838 7.41909 7.69156 7.78838 7.85133 7.97259 8.11059 8.54168 9.06359 9.66798 11.14495 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062291 B = 0.005488 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.397754 B = 5100.632076 C = 5190.206369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.119 4.119 3 H 0.068 0.932 4 C -0.140 4.140 5 C -0.126 4.126 6 C 0.063 3.937 7 H 0.067 0.933 8 N -0.670 5.670 9 C 0.083 3.917 10 H 0.064 0.936 11 C -0.156 4.156 12 C -0.096 4.096 13 C 0.046 3.954 14 H 0.026 0.974 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.887 3.113 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.105 4.105 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.339 0.661 32 H 0.051 0.949 33 H 0.041 0.959 34 H 0.046 0.954 35 H 0.066 0.934 36 H 0.257 0.743 37 H 0.052 0.948 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.539 1.328 -15.144 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.138 4.138 3 H 0.087 0.913 4 C -0.178 4.178 5 C -0.164 4.164 6 C -0.048 4.048 7 H 0.085 0.915 8 N -0.302 5.302 9 C -0.026 4.026 10 H 0.083 0.917 11 C -0.195 4.195 12 C -0.134 4.134 13 C 0.027 3.973 14 H 0.044 0.956 15 C -0.548 4.548 16 H 0.073 0.927 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.211 1.211 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.160 0.840 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.401 0.799 -15.171 15.257 hybrid contribution 0.590 0.390 1.183 1.378 sum 1.991 1.189 -13.988 14.179 Atomic orbital electron populations 1.21453 0.93388 1.02055 1.01534 1.22620 0.96588 0.97878 0.96731 0.91344 1.22834 1.00527 0.97590 0.96801 1.23017 1.02127 0.96338 0.94945 1.23019 0.95659 0.95919 0.90186 0.91503 1.60918 1.22016 1.42576 1.04653 1.22430 0.95332 0.95742 0.89132 0.91749 1.23179 0.98859 0.97132 1.00304 1.22362 0.99787 1.00634 0.90652 1.19458 0.93727 0.93266 0.90810 0.95596 1.21274 1.50035 0.92794 0.90702 0.92677 1.24983 0.95285 0.94910 0.98857 1.69972 1.51061 1.10180 1.21864 0.86609 0.77469 0.81215 0.83144 1.19809 1.21170 1.21123 1.22332 0.98052 0.98432 0.95466 0.92044 0.93133 0.91965 0.91500 0.90674 0.92335 0.89452 0.84018 0.93037 0.94037 0.93516 0.91499 0.93280 0.92875 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.98 37.15 0.33 -1.04 16 2 C -0.12 -1.34 4.43 -89.82 -0.40 -1.74 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.14 -1.43 7.65 -25.92 -0.20 -1.63 16 5 C -0.13 -1.51 7.53 -25.92 -0.20 -1.71 16 6 C 0.06 0.83 3.82 -66.90 -0.26 0.58 16 7 H 0.07 0.93 7.86 -51.93 -0.41 0.52 16 8 N -0.67 -10.44 5.75 -97.52 -0.56 -11.01 16 9 C 0.08 1.52 3.08 -66.41 -0.20 1.31 16 10 H 0.06 1.17 7.87 -51.93 -0.41 0.76 16 11 C -0.16 -2.97 6.42 -25.07 -0.16 -3.13 16 12 C -0.10 -2.27 5.61 -24.74 -0.14 -2.41 16 13 C 0.05 1.16 2.79 -90.12 -0.25 0.91 16 14 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 15 C -0.51 -14.23 8.49 -34.45 -0.29 -14.52 16 16 H 0.05 1.53 7.58 -52.49 -0.40 1.13 16 17 C 0.06 1.71 5.33 -17.82 -0.09 1.61 16 18 N -0.89 -25.95 12.01 55.43 0.67 -25.28 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.10 -2.23 6.16 -25.43 -0.16 -2.39 16 24 H 0.06 0.70 6.72 -51.93 -0.35 0.35 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.70 7.35 -51.93 -0.38 0.32 16 27 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.09 1.11 7.66 -51.93 -0.40 0.71 16 31 H 0.34 5.25 6.33 -39.29 -0.25 5.00 16 32 H 0.05 0.95 7.58 -51.93 -0.39 0.56 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 1.15 8.05 -51.93 -0.42 0.73 16 35 H 0.07 1.72 7.37 -51.93 -0.38 1.34 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.05 1.16 7.68 -51.92 -0.40 0.76 16 38 H 0.05 1.12 7.93 -51.93 -0.41 0.71 16 LS Contribution 294.13 15.07 4.43 4.43 Total: -1.00 -27.99 294.13 -9.18 -37.17 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.69 Total: 2.27 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -2.01 Total: -24.15 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.11 Total: -36.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.99 -9.18 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307688689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.232 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds