Wall clock time and date at job start Mon Mar 30 2020 03:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 112.85083 * 2 1 4 4 C 1.53779 * 113.69174 * 228.73394 * 2 1 3 5 5 C 1.53781 * 87.08044 * 270.86986 * 4 2 1 6 6 C 1.53774 * 113.61697 * 131.19453 * 2 1 3 7 7 H 1.09003 * 113.61779 * 203.83019 * 6 2 1 8 8 N 1.46905 * 113.61405 * 334.65301 * 6 2 1 9 9 C 1.46901 * 110.99747 * 204.99952 * 8 6 2 10 10 H 1.09004 * 110.05587 * 325.03526 * 9 8 6 11 11 C 1.54266 * 110.03492 * 86.45408 * 9 8 6 12 12 C 1.54891 * 104.31343 * 142.95910 * 11 9 8 13 13 C 1.54892 * 102.74959 * 321.99283 * 12 11 9 14 14 H 1.09001 * 110.48596 * 279.13315 * 13 12 11 15 15 C 1.50691 * 110.48722 * 156.62211 * 13 12 11 16 16 H 1.08002 * 120.00258 * 241.45334 * 15 13 12 17 17 C 1.37875 * 120.00149 * 61.45198 * 15 13 12 18 18 N 1.31513 * 120.00277 * 0.02562 * 17 15 13 19 19 Si 1.86801 * 120.00320 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46845 * 0.02562 * 19 17 15 21 21 H 1.48496 * 109.47249 * 120.00012 * 19 17 15 22 22 H 1.48498 * 109.47256 * 240.00422 * 19 17 15 23 23 C 1.54224 * 110.14194 * 203.47776 * 9 8 6 24 24 H 1.09005 * 109.47164 * 288.80499 * 1 2 3 25 25 H 1.09002 * 109.47561 * 48.79914 * 1 2 3 26 26 H 1.08997 * 109.47252 * 168.80929 * 1 2 3 27 27 H 1.09004 * 113.61143 * 25.41784 * 4 2 1 28 28 H 1.09001 * 113.61714 * 156.32203 * 4 2 1 29 29 H 1.08994 * 113.61774 * 220.01991 * 5 4 2 30 30 H 1.08997 * 113.61170 * 89.11130 * 5 4 2 31 31 H 1.00896 * 111.00032 * 328.94855 * 8 6 2 32 32 H 1.09002 * 110.48609 * 24.21323 * 11 9 8 33 33 H 1.08998 * 110.48769 * 261.70416 * 11 9 8 34 34 H 1.09000 * 110.75322 * 80.30558 * 12 11 9 35 35 H 1.09002 * 110.75658 * 203.67757 * 12 11 9 36 36 H 0.96998 * 120.00589 * 180.02562 * 18 17 15 37 37 H 1.09009 * 110.00234 * 121.44387 * 23 9 8 38 38 H 1.08998 * 110.06034 * 0.06168 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9532 1.0045 0.0000 4 6 2.1478 -0.9288 -1.0585 5 6 2.0950 -2.0419 0.0012 6 6 2.1460 -0.9280 1.0602 7 1 3.1580 -0.6468 1.3516 8 7 1.2672 -1.1704 2.2121 9 6 2.0481 -1.5266 3.4043 10 1 2.9205 -2.1142 3.1179 11 6 2.4919 -0.2491 4.1465 12 6 2.3954 -0.6245 5.6461 13 6 1.1201 -1.5021 5.6975 14 1 0.2274 -0.8769 5.7201 15 6 1.1548 -2.4133 6.8971 16 1 1.1486 -3.4848 6.7618 17 6 1.1945 -1.8792 8.1676 18 7 1.2016 -0.5745 8.3326 19 14 1.2369 -3.0088 9.6548 20 1 1.2204 -4.4232 9.2027 21 1 2.4741 -2.7535 10.4353 22 1 0.0503 -2.7478 10.5086 23 6 1.1738 -2.3241 4.3932 24 1 -0.3634 0.3313 0.9728 25 1 -0.3634 0.6769 -0.7732 26 1 -0.3633 -1.0081 -0.1994 27 1 1.4972 -1.1093 -1.9142 28 1 3.1609 -0.6487 -1.3473 29 1 2.9744 -2.6859 0.0023 30 1 1.1595 -2.6012 0.0006 31 1 0.6775 -0.3716 2.3916 32 1 1.8208 0.5784 3.9164 33 1 3.5177 0.0083 3.8830 34 1 3.2698 -1.1953 5.9585 35 1 2.2753 0.2677 6.2607 36 1 1.2300 -0.1987 9.2264 37 1 1.6220 -3.2992 4.5847 38 1 0.1694 -2.4482 3.9883 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307688689.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:30 Heat of formation + Delta-G solvation = -17.181566 kcal Electronic energy + Delta-G solvation = -15662.574215 eV Core-core repulsion = 13310.716012 eV Total energy + Delta-G solvation = -2351.858204 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.55353 -38.75301 -35.02799 -33.02735 -30.20366 -29.82967 -28.23054 -25.71372 -24.54634 -24.24570 -21.33349 -20.61212 -19.29150 -18.47711 -17.09446 -16.67907 -16.47394 -16.23276 -15.11583 -14.64149 -14.33531 -14.12826 -13.55962 -13.48981 -13.10995 -13.05021 -12.98139 -12.69845 -12.67874 -12.45281 -12.24254 -11.91828 -11.51730 -11.47937 -11.33108 -11.21324 -10.93027 -10.80809 -10.73374 -10.44576 -9.16783 -8.10430 -6.20506 1.39548 1.41252 1.52981 2.44010 3.19171 3.35425 3.67936 3.78777 3.96215 4.04560 4.10155 4.18679 4.34654 4.63031 4.63265 4.76667 4.81113 4.86626 4.91280 4.99069 5.04116 5.08190 5.09862 5.17948 5.20666 5.28840 5.36619 5.44913 5.48586 5.54206 5.65442 5.67319 5.95632 6.02032 6.32651 6.44367 6.58740 6.91034 7.46934 8.97833 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.062291 B = 0.005488 C = 0.005393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.397754 B = 5100.632076 C = 5190.206369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.115 4.115 3 H 0.075 0.925 4 C -0.127 4.127 5 C -0.127 4.127 6 C 0.051 3.949 7 H 0.066 0.934 8 N -0.670 5.670 9 C 0.098 3.902 10 H 0.072 0.928 11 C -0.141 4.141 12 C -0.090 4.090 13 C 0.038 3.962 14 H -0.006 1.006 15 C -0.532 4.532 16 H 0.051 0.949 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.953 3.047 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.096 4.096 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.340 0.660 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.032 0.968 35 H 0.038 0.962 36 H 0.259 0.741 37 H 0.045 0.955 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 1.089 -16.623 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.134 4.134 3 H 0.094 0.906 4 C -0.165 4.165 5 C -0.165 4.165 6 C -0.059 4.059 7 H 0.084 0.916 8 N -0.301 5.301 9 C -0.013 4.013 10 H 0.090 0.910 11 C -0.180 4.180 12 C -0.129 4.129 13 C 0.020 3.980 14 H 0.013 0.987 15 C -0.570 4.570 16 H 0.069 0.931 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.778 3.222 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.134 4.134 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.922 0.555 -16.671 16.791 hybrid contribution 0.397 0.475 1.639 1.752 sum 2.319 1.030 -15.032 15.245 Atomic orbital electron populations 1.21446 0.93221 1.02105 1.01575 1.22623 0.96704 0.98062 0.96007 0.90643 1.22796 1.01403 0.95840 0.96441 1.23004 1.01825 0.96497 0.95214 1.23201 0.95319 0.97707 0.89643 0.91648 1.60865 1.22122 1.42952 1.04124 1.22157 0.94975 0.94736 0.89394 0.90967 1.23057 1.00400 0.97849 0.96711 1.22146 0.98291 0.98829 0.93600 1.19441 0.93056 0.93367 0.92176 0.98733 1.21638 1.50162 0.93027 0.92146 0.93100 1.25764 0.94912 0.96338 1.01711 1.70098 1.51656 1.11734 1.22520 0.85587 0.77592 0.79469 0.79516 1.19140 1.20609 1.20623 1.22172 0.98843 0.97883 0.94496 0.92992 0.91516 0.92519 0.90323 0.89440 0.92123 0.90283 0.83957 0.92387 0.91961 0.94959 0.94356 0.93190 0.93585 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.98 71.98 0.65 -1.81 16 2 C -0.11 -2.28 4.43 -10.27 -0.05 -2.32 16 3 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 4 C -0.13 -2.20 7.65 31.12 0.24 -1.96 16 5 C -0.13 -2.76 7.53 31.12 0.23 -2.53 16 6 C 0.05 1.25 3.82 45.44 0.17 1.42 16 7 H 0.07 1.65 7.86 -2.39 -0.02 1.63 16 8 N -0.67 -19.86 5.75 -462.46 -2.66 -22.52 16 9 C 0.10 3.44 3.08 45.76 0.14 3.58 16 10 H 0.07 2.47 7.87 -2.38 -0.02 2.45 16 11 C -0.14 -5.25 6.42 31.67 0.20 -5.04 16 12 C -0.09 -4.34 5.61 31.89 0.18 -4.16 16 13 C 0.04 1.98 2.79 -10.47 -0.03 1.95 16 14 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 15 C -0.53 -30.28 8.49 25.60 0.22 -30.06 16 16 H 0.05 2.86 7.58 -2.91 -0.02 2.84 16 17 C 0.01 0.63 5.33 84.65 0.45 1.08 16 18 N -0.92 -54.70 12.01 21.45 0.26 -54.44 16 19 Si 0.95 44.64 29.54 68.60 2.03 46.66 16 20 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 23 C -0.10 -4.09 6.16 31.44 0.19 -3.90 16 24 H 0.05 1.11 6.72 -2.38 -0.02 1.09 16 25 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.06 1.16 7.35 -2.39 -0.02 1.15 16 27 H 0.08 1.21 8.10 -2.38 -0.02 1.19 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.08 1.86 7.66 -2.39 -0.02 1.84 16 31 H 0.34 10.08 6.33 -89.70 -0.57 9.51 16 32 H 0.06 2.08 7.58 -2.39 -0.02 2.07 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.03 1.60 8.05 -2.39 -0.02 1.58 16 35 H 0.04 2.03 7.37 -2.39 -0.02 2.01 16 36 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 37 H 0.05 2.01 7.68 -2.38 -0.02 1.99 16 38 H 0.05 2.26 7.93 -2.39 -0.02 2.24 16 Total: -1.00 -60.25 294.13 2.67 -57.58 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.44 Total: 16.47 kcal Atomic # 6 Polarization: -46.36 SS G_CDS: 2.60 Total: -43.75 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.40 Total: -76.96 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.25 2.67 -57.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307688689.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.398 kcal (2) G-P(sol) polarization free energy of solvation -60.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds