Wall clock time and date at job start Mon Mar 30 2020 03:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47479 * 2 1 4 4 N 1.46910 * 109.47407 * 119.99406 * 2 1 3 5 5 C 1.46899 * 110.99656 * 279.14298 * 4 2 1 6 6 C 1.53000 * 109.46554 * 185.06399 * 5 4 2 7 7 C 1.50700 * 115.55348 * 299.84492 * 6 5 4 8 8 H 1.08000 * 120.00417 * 144.26722 * 7 6 5 9 9 C 1.37883 * 119.99667 * 324.26930 * 7 6 5 10 10 N 1.31517 * 120.00185 * 351.31566 * 9 7 6 11 11 Si 1.86806 * 119.99942 * 171.31293 * 9 7 6 12 12 H 1.48496 * 109.46905 * 60.00244 * 11 9 7 13 13 H 1.48492 * 109.46943 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46963 * 300.00243 * 11 9 7 15 15 C 1.53005 * 117.49753 * 154.17638 * 6 5 4 16 16 C 1.53003 * 117.50281 * 85.51707 * 6 5 4 17 17 C 1.52997 * 109.47319 * 239.99567 * 2 1 3 18 18 C 1.53006 * 115.54889 * 305.49310 * 17 2 1 19 19 C 1.53008 * 117.50090 * 159.82488 * 17 2 1 20 20 C 1.52994 * 117.49982 * 91.16480 * 17 2 1 21 21 H 1.09001 * 109.47666 * 300.00592 * 1 2 3 22 22 H 1.09005 * 109.47296 * 60.00612 * 1 2 3 23 23 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 24 24 H 1.00892 * 111.00250 * 155.18340 * 4 2 1 25 25 H 1.08992 * 109.47379 * 65.06289 * 5 4 2 26 26 H 1.08998 * 109.47118 * 305.05758 * 5 4 2 27 27 H 0.96996 * 120.00045 * 185.00754 * 10 9 7 28 28 H 1.08994 * 117.49643 * 0.02562 * 15 6 5 29 29 H 1.09009 * 117.49681 * 145.01825 * 15 6 5 30 30 H 1.08996 * 117.50292 * 214.97992 * 16 6 5 31 31 H 1.09000 * 117.49706 * 359.97429 * 16 6 5 32 32 H 1.08993 * 109.46835 * 64.88200 * 18 17 2 33 33 H 1.09003 * 109.46812 * 184.88169 * 18 17 2 34 34 H 1.09001 * 109.46893 * 304.88311 * 18 17 2 35 35 H 1.09000 * 117.49606 * 359.97438 * 19 17 2 36 36 H 1.08994 * 117.49797 * 145.01903 * 19 17 2 37 37 H 1.09003 * 117.50232 * 214.98003 * 20 17 2 38 38 H 1.09001 * 117.49978 * 359.97438 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 1.9897 0.1959 2.3692 6 6 2.6222 -0.5162 3.5666 7 6 1.9490 -1.7957 3.9919 8 1 2.5405 -2.6199 4.3621 9 6 0.5778 -1.9139 3.9083 10 7 -0.1569 -0.8612 3.6222 11 14 -0.2365 -3.5694 4.2014 12 1 0.0813 -4.0414 5.5730 13 1 -1.7075 -3.4305 4.0537 14 1 0.2695 -4.5524 3.2099 15 6 3.2384 0.3559 4.6624 16 6 4.1429 -0.4353 3.7142 17 6 2.0399 -0.7213 -1.2491 18 6 1.5043 -2.1394 -1.4572 19 6 3.4765 -0.4367 -1.6923 20 6 2.3014 0.1252 -2.4964 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 2.9462 -1.0627 1.0504 25 1 0.9569 0.4533 2.6035 26 1 2.5499 1.1048 2.1496 27 1 -1.1245 -0.9272 3.6347 28 1 3.1927 1.4368 4.5304 29 1 3.1571 0.0040 5.6909 30 1 4.6564 -1.3073 4.1192 31 1 4.6929 0.1249 2.9580 32 1 0.4287 -2.0998 -1.6291 33 1 1.9939 -2.5896 -2.3208 34 1 1.7087 -2.7388 -0.5701 35 1 4.0580 0.2648 -1.0941 36 1 4.0398 -1.2595 -2.1324 37 1 2.0923 -0.3282 -3.4654 38 1 2.1097 1.1960 -2.4273 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379623758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:06 Heat of formation + Delta-G solvation = 44.085072 kcal Electronic energy + Delta-G solvation = -16136.916788 eV Core-core repulsion = 13787.715305 eV Total energy + Delta-G solvation = -2349.201483 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.56174 -36.66952 -33.66063 -31.95074 -29.34841 -27.74131 -25.50177 -24.54149 -22.13074 -21.73278 -21.02132 -18.91448 -18.14482 -16.26919 -15.32352 -14.69462 -14.50480 -14.07148 -13.70677 -13.16580 -12.97911 -12.48090 -12.10246 -11.72164 -11.52449 -11.48553 -11.31127 -11.16413 -10.97750 -10.82676 -10.57106 -10.39625 -10.22912 -9.89615 -9.81877 -9.43609 -9.09820 -8.88622 -8.60433 -7.92051 -7.15437 -5.80835 -3.87068 3.39996 3.44281 3.48756 3.99936 4.51947 4.84936 5.02186 5.11524 5.18893 5.39911 5.54123 5.71424 5.78608 5.85724 6.04160 6.05150 6.18780 6.20159 6.30357 6.32116 6.36918 6.45329 6.49357 6.65817 6.70108 6.74065 6.80629 6.86707 7.01001 7.09441 7.26487 7.39668 7.76920 8.18891 8.34130 8.49174 8.74043 9.06444 9.73189 11.17520 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.010248 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.204872 B = 2731.648162 C = 3342.721498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.126 3.874 3 H 0.022 0.978 4 N -0.647 5.647 5 C 0.098 3.902 6 C 0.064 3.936 7 C -0.478 4.478 8 H 0.053 0.947 9 C 0.089 3.911 10 N -0.872 5.872 11 Si 0.891 3.109 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C -0.207 4.207 16 C -0.219 4.219 17 C -0.113 4.113 18 C -0.107 4.107 19 C -0.180 4.180 20 C -0.179 4.179 21 H 0.063 0.937 22 H 0.036 0.964 23 H 0.059 0.941 24 H 0.324 0.676 25 H 0.126 0.874 26 H -0.025 1.025 27 H 0.257 0.743 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.566 1.534 -9.269 9.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.016 3.984 3 H 0.040 0.960 4 N -0.277 5.277 5 C -0.030 4.030 6 C 0.063 3.937 7 C -0.516 4.516 8 H 0.071 0.929 9 C -0.115 4.115 10 N -0.509 5.509 11 Si 0.720 3.280 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.246 4.246 16 C -0.257 4.257 17 C -0.113 4.113 18 C -0.164 4.164 19 C -0.218 4.218 20 C -0.217 4.217 21 H 0.082 0.918 22 H 0.055 0.945 23 H 0.078 0.922 24 H 0.141 0.859 25 H 0.143 0.857 26 H -0.007 1.007 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.734 1.283 -9.215 9.464 hybrid contribution 0.535 -0.147 0.016 0.555 sum 2.268 1.136 -9.199 9.543 Atomic orbital electron populations 1.21665 0.94632 1.02195 1.00177 1.20921 0.95911 0.93422 0.88166 0.95995 1.60301 1.29188 1.36847 1.01372 1.21865 1.03979 0.89162 0.88043 1.19003 0.87136 0.95335 0.92179 1.20271 0.91385 0.97276 1.42622 0.92926 1.24742 0.97093 0.95861 0.93765 1.69676 1.04878 1.28362 1.47970 0.86695 0.78040 0.85051 0.78212 1.20890 1.21544 1.20212 1.22954 1.08874 0.95886 0.96881 1.22900 0.97023 1.02130 1.03625 1.21667 0.97471 0.96980 0.95173 1.21230 1.00309 0.93451 1.01423 1.23003 0.91359 1.03325 1.04067 1.22995 1.03631 0.99427 0.95643 0.91819 0.94502 0.92179 0.85900 0.85652 1.00727 0.93237 0.92091 0.90535 0.90883 0.92083 0.92407 0.93833 0.90731 0.89353 0.89110 0.89247 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 9.00 37.15 0.33 -2.02 16 2 C 0.13 2.28 2.48 -67.71 -0.17 2.11 16 3 H 0.02 0.41 7.74 -51.93 -0.40 0.01 16 4 N -0.65 -13.70 6.00 -106.73 -0.64 -14.34 16 5 C 0.10 2.29 4.71 -3.82 -0.02 2.28 16 6 C 0.06 1.59 1.93 -155.66 -0.30 1.29 16 7 C -0.48 -13.00 8.85 -34.44 -0.30 -13.31 16 8 H 0.05 1.45 7.83 -52.49 -0.41 1.04 16 9 C 0.09 2.38 5.28 -17.82 -0.09 2.29 16 10 N -0.87 -23.60 10.60 55.43 0.59 -23.02 16 11 Si 0.89 21.34 29.55 -169.99 -5.02 16.32 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C -0.21 -4.82 9.95 -26.69 -0.27 -5.09 16 16 C -0.22 -4.87 9.95 -26.69 -0.27 -5.13 16 17 C -0.11 -1.72 1.57 -154.51 -0.24 -1.96 16 18 C -0.11 -1.61 9.01 37.16 0.33 -1.27 16 19 C -0.18 -2.47 9.90 -26.69 -0.26 -2.74 16 20 C -0.18 -2.34 9.94 -26.70 -0.27 -2.60 16 21 H 0.06 1.29 7.30 -51.93 -0.38 0.91 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.15 6.99 -51.93 -0.36 0.79 16 24 H 0.32 6.76 8.31 -39.30 -0.33 6.43 16 25 H 0.13 3.26 4.81 -51.93 -0.25 3.01 16 26 H -0.03 -0.58 7.91 -51.93 -0.41 -0.99 16 27 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 28 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.08 1.79 8.14 -51.92 -0.42 1.37 16 30 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.06 0.85 7.23 -51.93 -0.38 0.47 16 33 H 0.04 0.56 8.09 -51.93 -0.42 0.14 16 34 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -26.60 305.91 -8.68 -35.28 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.70 Total: 7.31 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -1.52 Total: -26.16 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: -0.05 Total: -37.36 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.60 -8.68 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379623758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.364 kcal (2) G-P(sol) polarization free energy of solvation -26.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds