Wall clock time and date at job start Mon Mar 30 2020 03:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09000 * 109.47479 * 2 1 4 4 N 1.46910 * 109.47407 * 119.99406 * 2 1 3 5 5 C 1.46899 * 110.99656 * 279.14298 * 4 2 1 6 6 C 1.53000 * 109.46554 * 185.06399 * 5 4 2 7 7 C 1.50700 * 115.55348 * 299.84492 * 6 5 4 8 8 H 1.08000 * 120.00417 * 144.26722 * 7 6 5 9 9 C 1.37883 * 119.99667 * 324.26930 * 7 6 5 10 10 N 1.31517 * 120.00185 * 351.31566 * 9 7 6 11 11 Si 1.86806 * 119.99942 * 171.31293 * 9 7 6 12 12 H 1.48496 * 109.46905 * 60.00244 * 11 9 7 13 13 H 1.48492 * 109.46943 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.46963 * 300.00243 * 11 9 7 15 15 C 1.53005 * 117.49753 * 154.17638 * 6 5 4 16 16 C 1.53003 * 117.50281 * 85.51707 * 6 5 4 17 17 C 1.52997 * 109.47319 * 239.99567 * 2 1 3 18 18 C 1.53006 * 115.54889 * 305.49310 * 17 2 1 19 19 C 1.53008 * 117.50090 * 159.82488 * 17 2 1 20 20 C 1.52994 * 117.49982 * 91.16480 * 17 2 1 21 21 H 1.09001 * 109.47666 * 300.00592 * 1 2 3 22 22 H 1.09005 * 109.47296 * 60.00612 * 1 2 3 23 23 H 1.08999 * 109.47202 * 180.02562 * 1 2 3 24 24 H 1.00892 * 111.00250 * 155.18340 * 4 2 1 25 25 H 1.08992 * 109.47379 * 65.06289 * 5 4 2 26 26 H 1.08998 * 109.47118 * 305.05758 * 5 4 2 27 27 H 0.96996 * 120.00045 * 185.00754 * 10 9 7 28 28 H 1.08994 * 117.49643 * 0.02562 * 15 6 5 29 29 H 1.09009 * 117.49681 * 145.01825 * 15 6 5 30 30 H 1.08996 * 117.50292 * 214.97992 * 16 6 5 31 31 H 1.09000 * 117.49706 * 359.97429 * 16 6 5 32 32 H 1.08993 * 109.46835 * 64.88200 * 18 17 2 33 33 H 1.09003 * 109.46812 * 184.88169 * 18 17 2 34 34 H 1.09001 * 109.46893 * 304.88311 * 18 17 2 35 35 H 1.09000 * 117.49606 * 359.97438 * 19 17 2 36 36 H 1.08994 * 117.49797 * 145.01903 * 19 17 2 37 37 H 1.09003 * 117.50232 * 214.98003 * 20 17 2 38 38 H 1.09001 * 117.49978 * 359.97438 * 20 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1996 5 6 1.9897 0.1959 2.3692 6 6 2.6222 -0.5162 3.5666 7 6 1.9490 -1.7957 3.9919 8 1 2.5405 -2.6199 4.3621 9 6 0.5778 -1.9139 3.9083 10 7 -0.1569 -0.8612 3.6222 11 14 -0.2365 -3.5694 4.2014 12 1 0.0813 -4.0414 5.5730 13 1 -1.7075 -3.4305 4.0537 14 1 0.2695 -4.5524 3.2099 15 6 3.2384 0.3559 4.6624 16 6 4.1429 -0.4353 3.7142 17 6 2.0399 -0.7213 -1.2491 18 6 1.5043 -2.1394 -1.4572 19 6 3.4765 -0.4367 -1.6923 20 6 2.3014 0.1252 -2.4964 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 2.9462 -1.0627 1.0504 25 1 0.9569 0.4533 2.6035 26 1 2.5499 1.1048 2.1496 27 1 -1.1245 -0.9272 3.6347 28 1 3.1927 1.4368 4.5304 29 1 3.1571 0.0040 5.6909 30 1 4.6564 -1.3073 4.1192 31 1 4.6929 0.1249 2.9580 32 1 0.4287 -2.0998 -1.6291 33 1 1.9939 -2.5896 -2.3208 34 1 1.7087 -2.7388 -0.5701 35 1 4.0580 0.2648 -1.0941 36 1 4.0398 -1.2595 -2.1324 37 1 2.0923 -0.3282 -3.4654 38 1 2.1097 1.1960 -2.4273 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379623758.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:05 Heat of formation + Delta-G solvation = 30.360403 kcal Electronic energy + Delta-G solvation = -16137.511934 eV Core-core repulsion = 13787.715305 eV Total energy + Delta-G solvation = -2349.796629 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.87903 -38.42268 -35.18437 -33.99726 -30.85182 -28.97164 -27.50538 -26.28351 -23.28358 -23.15021 -22.79159 -20.81831 -19.50336 -18.10904 -16.81151 -16.53841 -16.02615 -15.65913 -15.19562 -14.84577 -14.65141 -13.85873 -13.54597 -13.34538 -13.20234 -12.91256 -12.78802 -12.74321 -12.57575 -12.33127 -12.31455 -12.24709 -12.00655 -11.45574 -11.22866 -10.89941 -10.85453 -10.56457 -10.44824 -9.88008 -8.82538 -7.83935 -5.96973 1.46517 1.50245 1.55306 2.52572 2.87293 3.16087 3.55054 3.77528 3.85100 3.97616 4.13530 4.23067 4.39123 4.49780 4.59266 4.72161 4.79078 4.80811 4.89213 4.95312 4.99031 5.00068 5.04567 5.11239 5.14584 5.18015 5.29641 5.32065 5.41524 5.46092 5.55351 5.63686 5.73698 6.21185 6.50490 6.67810 6.99983 7.01383 7.64598 9.10592 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023559 B = 0.010248 C = 0.008374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.204872 B = 2731.648162 C = 3342.721498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.127 3.873 3 H 0.018 0.982 4 N -0.656 5.656 5 C 0.111 3.889 6 C 0.035 3.965 7 C -0.498 4.498 8 H 0.040 0.960 9 C 0.053 3.947 10 N -0.884 5.884 11 Si 0.941 3.059 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.278 1.278 15 C -0.209 4.209 16 C -0.197 4.197 17 C -0.133 4.133 18 C -0.101 4.101 19 C -0.176 4.176 20 C -0.158 4.158 21 H 0.034 0.966 22 H 0.063 0.937 23 H 0.045 0.955 24 H 0.325 0.675 25 H 0.099 0.901 26 H -0.023 1.023 27 H 0.255 0.745 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 1.466 -10.867 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.018 3.982 3 H 0.036 0.964 4 N -0.286 5.286 5 C -0.018 4.018 6 C 0.034 3.966 7 C -0.535 4.535 8 H 0.058 0.942 9 C -0.149 4.149 10 N -0.521 5.521 11 Si 0.769 3.231 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.203 1.203 15 C -0.248 4.248 16 C -0.234 4.234 17 C -0.133 4.133 18 C -0.158 4.158 19 C -0.213 4.213 20 C -0.196 4.196 21 H 0.054 0.946 22 H 0.082 0.918 23 H 0.065 0.935 24 H 0.142 0.858 25 H 0.117 0.883 26 H -0.005 1.005 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.384 1.218 -10.812 11.139 hybrid contribution 0.350 -0.101 0.519 0.634 sum 2.734 1.117 -10.294 10.709 Atomic orbital electron populations 1.21573 0.95003 1.01172 1.00046 1.20923 0.95532 0.93354 0.88437 0.96370 1.60211 1.29264 1.37064 1.02024 1.21547 1.02131 0.89439 0.88669 1.19115 0.88967 0.95200 0.93280 1.20444 0.91840 0.98024 1.43194 0.94203 1.25269 0.97512 0.98251 0.93836 1.69817 1.04721 1.29359 1.48229 0.85911 0.77262 0.82017 0.77942 1.20683 1.21245 1.20330 1.22948 1.09037 0.96481 0.96324 1.22874 0.95561 1.01854 1.03109 1.21526 0.99264 0.97363 0.95168 1.21155 1.00495 0.93079 1.01101 1.23060 0.90742 1.03649 1.03837 1.23080 1.01834 0.99393 0.95279 0.94647 0.91829 0.93548 0.85811 0.88313 1.00524 0.93496 0.90960 0.91313 0.90725 0.90073 0.92607 0.91477 0.93445 0.89905 0.87653 0.87150 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.36 9.00 71.98 0.65 -3.71 16 2 C 0.13 4.52 2.48 44.91 0.11 4.63 16 3 H 0.02 0.67 7.74 -2.39 -0.02 0.65 16 4 N -0.66 -27.74 6.00 -491.59 -2.95 -30.68 16 5 C 0.11 5.23 4.71 86.30 0.41 5.64 16 6 C 0.04 1.73 1.93 -52.92 -0.10 1.63 16 7 C -0.50 -27.29 8.85 25.60 0.23 -27.06 16 8 H 0.04 2.22 7.83 -2.91 -0.02 2.20 16 9 C 0.05 2.87 5.28 84.66 0.45 3.32 16 10 N -0.88 -48.58 10.60 21.45 0.23 -48.35 16 11 Si 0.94 44.07 29.55 68.60 2.03 46.10 16 12 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 C -0.21 -9.62 9.95 30.62 0.30 -9.31 16 16 C -0.20 -8.48 9.95 30.62 0.30 -8.17 16 17 C -0.13 -3.80 1.57 -52.18 -0.08 -3.88 16 18 C -0.10 -2.87 9.01 71.98 0.65 -2.22 16 19 C -0.18 -4.33 9.90 30.62 0.30 -4.03 16 20 C -0.16 -3.59 9.94 30.62 0.30 -3.28 16 21 H 0.03 1.46 7.30 -2.39 -0.02 1.44 16 22 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 23 H 0.05 1.78 6.99 -2.39 -0.02 1.76 16 24 H 0.32 13.42 8.31 -89.70 -0.75 12.68 16 25 H 0.10 5.25 4.81 -2.39 -0.01 5.24 16 26 H -0.02 -1.05 7.91 -2.39 -0.02 -1.07 16 27 H 0.26 13.64 8.32 -92.71 -0.77 12.87 16 28 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 29 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 30 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 32 H 0.05 1.56 7.23 -2.39 -0.02 1.55 16 33 H 0.07 1.55 8.09 -2.39 -0.02 1.53 16 34 H 0.05 1.58 8.07 -2.39 -0.02 1.56 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -56.13 305.91 3.09 -53.04 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.27 Total: 26.33 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 3.52 Total: -46.45 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.72 Total: -79.03 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -56.13 3.09 -53.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379623758.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.402 kcal (2) G-P(sol) polarization free energy of solvation -56.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds