Wall clock time and date at job start Mon Mar 30 2020 02:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47306 * 2 1 4 4 H 1.09002 * 109.46787 * 303.79004 * 3 2 1 5 5 C 1.50698 * 109.47174 * 183.78915 * 3 2 1 6 6 H 1.07994 * 120.00406 * 239.99468 * 5 3 2 7 7 C 1.37878 * 119.99726 * 60.00211 * 5 3 2 8 8 N 1.31517 * 120.00010 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47382 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47298 * 120.00117 * 9 7 5 12 12 H 1.48507 * 109.47143 * 239.99907 * 9 7 5 13 13 N 1.46903 * 109.47100 * 63.79041 * 3 2 1 14 14 C 1.46905 * 110.99848 * 214.46628 * 13 3 2 15 15 C 1.52997 * 115.54533 * 185.74855 * 14 13 3 16 16 C 1.53004 * 115.54458 * 179.97438 * 15 14 13 17 17 C 1.52997 * 117.50122 * 34.33063 * 15 14 13 18 18 C 1.52996 * 117.50367 * 325.66592 * 15 14 13 19 19 C 1.53001 * 117.49707 * 40.07755 * 14 13 3 20 20 C 1.52996 * 117.49650 * 331.41702 * 14 13 3 21 21 H 1.09002 * 109.47262 * 294.23930 * 1 2 3 22 22 H 1.09001 * 109.47260 * 54.23527 * 1 2 3 23 23 H 1.08998 * 109.47312 * 174.24140 * 1 2 3 24 24 H 1.08993 * 109.47173 * 239.99774 * 2 1 3 25 25 H 1.09003 * 109.46909 * 119.99609 * 2 1 3 26 26 H 0.97000 * 119.99723 * 180.02562 * 8 7 5 27 27 H 1.00894 * 111.00277 * 90.50965 * 13 3 2 28 28 H 1.09006 * 109.46816 * 60.00535 * 16 15 14 29 29 H 1.09000 * 109.46974 * 179.97438 * 16 15 14 30 30 H 1.08998 * 109.47571 * 300.00112 * 16 15 14 31 31 H 1.09001 * 117.50164 * 359.97438 * 17 15 14 32 32 H 1.08998 * 117.49741 * 145.02284 * 17 15 14 33 33 H 1.09001 * 117.50450 * 214.98254 * 18 15 14 34 34 H 1.09003 * 117.49558 * 359.97438 * 18 15 14 35 35 H 1.08992 * 117.50162 * 0.02562 * 19 14 13 36 36 H 1.09004 * 117.49247 * 145.02330 * 19 14 13 37 37 H 1.09001 * 117.49848 * 214.98239 * 20 14 13 38 38 H 1.08996 * 117.50388 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6223 1.9755 -0.8541 5 6 3.5441 1.4435 -0.0939 6 1 4.1338 1.8936 0.6909 7 6 4.1672 0.8699 -1.1819 8 7 3.4490 0.3214 -2.1374 9 14 6.0315 0.8717 -1.2986 10 1 6.6017 1.5462 -0.1048 11 1 6.5251 -0.5275 -1.3602 12 1 6.4501 1.5986 -2.5242 13 7 1.6265 2.1081 1.2426 14 6 1.3342 3.5283 1.0070 15 6 1.0256 4.3547 2.2571 16 6 0.7217 5.8340 2.0116 17 6 1.7658 3.9901 3.5454 18 6 0.2786 3.6594 3.3970 19 6 0.5939 3.8929 -0.2815 20 6 2.0812 4.2236 -0.1330 21 1 -0.3634 0.4219 0.9371 22 1 -0.3634 0.6006 -0.8339 23 1 -0.3634 -1.0224 -0.1031 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.8874 -0.0824 -2.9026 27 1 2.3253 1.9973 1.9620 28 1 -0.1492 5.9231 1.3622 29 1 0.5169 6.3255 2.9628 30 1 1.5803 6.3072 1.5352 31 1 2.4724 3.1612 3.5026 32 1 2.0355 4.8040 4.2184 33 1 -0.4294 4.2558 3.9724 34 1 0.0066 2.6133 3.2561 35 1 0.3235 3.0789 -0.9541 36 1 -0.1126 4.7218 -0.2386 37 1 2.3524 5.2699 0.0075 38 1 2.7892 3.6272 -0.7083 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398204194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:50 Heat of formation + Delta-G solvation = 30.047159 kcal Electronic energy + Delta-G solvation = -16314.867099 eV Core-core repulsion = 13965.056886 eV Total energy + Delta-G solvation = -2349.810213 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61290 -37.51477 -35.52245 -33.66703 -31.67793 -29.03717 -28.18227 -24.97888 -23.50689 -23.31840 -22.74790 -21.03582 -19.12556 -18.50537 -17.14161 -16.89088 -16.29969 -15.18372 -14.92901 -14.45965 -14.33278 -14.10038 -13.98195 -13.31142 -13.10924 -13.09254 -12.91918 -12.65469 -12.38971 -12.28300 -12.18307 -11.92415 -11.85894 -11.47578 -11.45019 -11.30067 -10.98144 -10.68685 -10.42478 -10.16269 -8.78729 -8.04214 -6.23514 1.34923 1.38525 1.47705 2.39515 2.75677 3.14724 3.39567 3.61360 3.77904 3.98080 4.17415 4.19187 4.40594 4.52470 4.59967 4.74446 4.76774 4.84326 4.91188 4.94123 4.99360 5.09866 5.14024 5.18027 5.28442 5.34666 5.42730 5.43600 5.49739 5.54769 5.58018 5.66339 5.81085 6.12806 6.22128 6.43910 6.85764 7.04613 7.45472 8.92203 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027478 B = 0.009552 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.762930 B = 2930.469435 C = 3306.907046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.022 0.978 5 C -0.542 4.542 6 H 0.046 0.954 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.945 3.055 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.644 5.644 14 C 0.101 3.899 15 C -0.097 4.097 16 C -0.107 4.107 17 C -0.174 4.174 18 C -0.154 4.154 19 C -0.170 4.170 20 C -0.223 4.223 21 H 0.055 0.945 22 H 0.029 0.971 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.024 0.976 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 8.082 8.082 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.106 3.894 4 H 0.039 0.961 5 C -0.581 4.581 6 H 0.064 0.936 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.272 5.272 14 C 0.008 3.992 15 C -0.098 4.098 16 C -0.164 4.164 17 C -0.211 4.211 18 C -0.191 4.191 19 C -0.208 4.208 20 C -0.263 4.263 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.873 7.756 7.873 12.515 hybrid contribution 2.169 -0.140 -0.816 2.322 sum -3.705 7.616 7.057 11.024 Atomic orbital electron populations 1.21529 0.96552 0.99339 1.00492 1.21391 0.94248 0.98855 0.99775 1.19109 0.91622 0.91160 0.87467 0.96053 1.22061 0.93715 1.36763 1.05537 0.93582 1.25582 1.01650 0.95039 0.95623 1.70009 1.36139 1.38758 1.10062 0.85713 0.81743 0.77608 0.77789 1.19568 1.20758 1.20967 1.60578 1.47363 1.08856 1.10387 1.20853 1.01756 0.88220 0.88398 1.20794 1.06112 0.95368 0.87479 1.21310 1.01537 0.91035 1.02557 1.23034 0.95378 1.03371 0.99311 1.22984 0.94345 1.01495 1.00267 1.23114 0.94920 1.02633 1.00117 1.23637 0.95095 1.01375 1.06160 0.92572 0.95187 0.93910 0.92166 0.95739 0.93050 0.85245 0.91784 0.90491 0.92448 0.90404 0.87196 0.87223 0.89488 0.91227 0.87089 0.88505 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.72 71.98 0.70 -4.33 16 2 C -0.10 -5.07 5.44 30.59 0.17 -4.90 16 3 C 0.21 10.57 1.38 44.17 0.06 10.63 16 4 H 0.02 1.17 4.67 -2.39 -0.01 1.16 16 5 C -0.54 -29.07 6.96 25.60 0.18 -28.89 16 6 H 0.05 2.49 7.59 -2.91 -0.02 2.47 16 7 C 0.02 1.14 5.30 84.65 0.45 1.59 16 8 N -0.91 -52.01 11.30 21.45 0.24 -51.77 16 9 Si 0.94 43.77 29.54 68.60 2.03 45.80 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.64 -26.82 5.38 -452.08 -2.43 -29.25 16 14 C 0.10 3.69 2.99 3.52 0.01 3.70 16 15 C -0.10 -2.78 2.51 -52.18 -0.13 -2.91 16 16 C -0.11 -2.45 8.74 71.98 0.63 -1.82 16 17 C -0.17 -4.61 9.68 30.62 0.30 -4.32 16 18 C -0.15 -4.00 9.73 30.62 0.30 -3.70 16 19 C -0.17 -6.27 9.15 30.62 0.28 -5.99 16 20 C -0.22 -8.77 8.98 30.62 0.28 -8.49 16 21 H 0.06 2.19 7.88 -2.39 -0.02 2.17 16 22 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.06 3.30 5.98 -2.39 -0.01 3.29 16 25 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.33 13.86 6.52 -89.70 -0.58 13.28 16 28 H 0.06 1.40 6.90 -2.38 -0.02 1.38 16 29 H 0.08 1.40 8.11 -2.39 -0.02 1.38 16 30 H 0.06 1.33 6.90 -2.39 -0.02 1.32 16 31 H 0.08 2.34 6.70 -2.39 -0.02 2.32 16 32 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.09 2.59 7.87 -2.39 -0.02 2.57 16 35 H 0.07 2.94 6.51 -2.39 -0.02 2.93 16 36 H 0.11 3.38 6.75 -2.38 -0.02 3.36 16 37 H 0.10 3.31 6.75 -2.39 -0.02 3.29 16 38 H 0.08 3.87 5.60 -2.39 -0.01 3.86 16 Total: -1.00 -57.43 291.87 3.50 -53.93 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.45 Total: 30.72 kcal Atomic # 6 Polarization: -52.64 SS G_CDS: 3.21 Total: -49.42 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -2.19 Total: -81.02 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -57.43 3.50 -53.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398204194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.977 kcal (2) G-P(sol) polarization free energy of solvation -57.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds