Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47323 * 2 1 4 4 H 1.08994 * 109.47517 * 179.06607 * 3 2 1 5 5 C 1.50705 * 109.47531 * 299.07035 * 3 2 1 6 6 H 1.07999 * 119.99818 * 119.99355 * 5 3 2 7 7 C 1.37873 * 119.99715 * 300.00269 * 5 3 2 8 8 N 1.31515 * 119.99676 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00062 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47195 * 90.00542 * 9 7 5 11 11 H 1.48505 * 109.47163 * 210.00515 * 9 7 5 12 12 H 1.48495 * 109.47292 * 330.00133 * 9 7 5 13 13 N 1.46909 * 109.46815 * 59.06758 * 3 2 1 14 14 C 1.48528 * 110.99635 * 59.79978 * 13 3 2 15 15 C 1.54940 * 103.22769 * 159.72029 * 14 13 3 16 16 C 1.54594 * 102.91695 * 322.58349 * 15 14 13 17 17 H 1.09001 * 110.39085 * 262.99270 * 16 15 14 18 18 C 1.53000 * 110.30618 * 140.87385 * 16 15 14 19 19 C 1.53004 * 117.49873 * 132.90295 * 18 16 15 20 20 C 1.52996 * 60.00012 * 252.51013 * 19 18 16 21 21 C 1.47900 * 110.99838 * 177.19048 * 13 3 2 22 22 H 1.08996 * 109.47281 * 55.34606 * 1 2 3 23 23 H 1.08998 * 109.46892 * 295.35119 * 1 2 3 24 24 H 1.09001 * 109.47381 * 175.35506 * 1 2 3 25 25 H 1.08997 * 109.47340 * 120.00424 * 2 1 3 26 26 H 1.09003 * 109.46895 * 240.00672 * 2 1 3 27 27 H 0.97002 * 119.99415 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.66623 * 278.15116 * 14 13 3 29 29 H 1.08998 * 110.67296 * 41.28655 * 14 13 3 30 30 H 1.08994 * 110.72478 * 204.22366 * 15 14 13 31 31 H 1.08998 * 110.87729 * 81.01161 * 15 14 13 32 32 H 1.09001 * 115.55266 * 278.61247 * 18 16 15 33 33 H 1.09000 * 117.49781 * 0.02562 * 19 18 16 34 34 H 1.08995 * 117.50066 * 145.01677 * 19 18 16 35 35 H 1.09000 * 117.49949 * 252.50663 * 20 19 18 36 36 H 1.08997 * 117.50077 * 107.49254 * 20 19 18 37 37 H 1.08997 * 109.92057 * 333.51211 * 21 13 3 38 38 H 1.09008 * 109.91698 * 94.80507 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0167 5 6 1.5567 2.1463 -1.2418 6 1 0.9343 3.0249 -1.1569 7 6 1.9088 1.6685 -2.4862 8 7 1.4866 2.2824 -3.5699 9 14 2.9856 0.1492 -2.6330 10 1 2.1282 -1.0621 -2.6848 11 1 3.7965 0.2351 -3.8741 12 1 3.8883 0.0667 -1.4567 13 7 1.5320 2.1414 1.1881 14 6 1.9853 1.4717 2.4339 15 6 1.8314 2.5783 3.5075 16 6 2.2512 3.8576 2.7477 17 1 3.2955 4.0946 2.9510 18 6 1.3539 5.0308 3.1470 19 6 2.0360 6.3559 3.4931 20 6 1.4141 5.5034 4.6009 21 6 2.0597 3.5214 1.2572 22 1 -0.3633 0.5843 -0.8453 23 1 -0.3633 0.4400 0.9287 24 1 -0.3634 -1.0243 -0.0832 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.7347 1.9464 -4.4454 28 1 1.3473 0.6190 2.6663 29 1 3.0267 1.1621 2.3473 30 1 2.4978 2.3938 4.3499 31 1 0.7973 2.6516 3.8443 32 1 0.3890 5.0779 2.6421 33 1 3.1239 6.3920 3.4360 34 1 1.5200 7.2751 3.2157 35 1 0.4890 5.8617 5.0524 36 1 2.0929 4.9785 5.2730 37 1 3.0160 3.5797 0.7376 38 1 1.3475 4.2142 0.8088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400221159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = 25.752762 kcal Electronic energy + Delta-G solvation = -16070.044103 eV Core-core repulsion = 13720.047672 eV Total energy + Delta-G solvation = -2349.996432 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.01121 -36.76454 -34.08145 -31.73585 -29.67086 -28.39409 -26.37230 -23.28655 -22.39396 -21.73315 -21.22907 -19.44008 -19.07492 -16.36001 -15.69921 -15.29062 -15.14468 -14.13233 -13.92694 -13.31575 -12.88510 -12.56368 -12.48869 -12.11243 -11.97361 -11.53499 -11.46469 -11.14734 -11.01791 -10.76238 -10.57820 -10.40974 -10.19628 -10.13861 -9.98424 -9.83214 -9.55869 -9.27948 -8.93696 -8.51131 -7.36748 -6.04231 -4.01070 3.28042 3.37509 3.39136 3.92842 4.41987 4.76193 4.87603 4.99889 5.05391 5.26792 5.29264 5.43927 5.61147 5.69235 5.73120 5.87678 5.96835 6.03762 6.11344 6.16707 6.18821 6.24300 6.31241 6.38921 6.42259 6.55219 6.68714 6.70810 6.77042 6.93251 7.06039 7.15788 7.48113 7.62543 7.95950 8.05650 8.68462 9.03897 9.58705 11.08804 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036477 B = 0.007983 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.419832 B = 3506.540225 C = 3874.900206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.176 3.824 4 H -0.003 1.003 5 C -0.495 4.495 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.900 5.900 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.298 1.298 12 H -0.270 1.270 13 N -0.496 5.496 14 C 0.030 3.970 15 C -0.112 4.112 16 C -0.072 4.072 17 H 0.066 0.934 18 C -0.131 4.131 19 C -0.184 4.184 20 C -0.184 4.184 21 C 0.061 3.939 22 H 0.071 0.929 23 H 0.052 0.948 24 H 0.021 0.979 25 H 0.032 0.968 26 H 0.045 0.955 27 H 0.263 0.737 28 H 0.073 0.927 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.042 0.958 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.329 1.794 13.731 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.157 4.157 3 C 0.069 3.931 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.131 4.131 8 N -0.538 5.538 9 Si 0.712 3.288 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.221 5.221 14 C -0.099 4.099 15 C -0.150 4.150 16 C -0.091 4.091 17 H 0.084 0.916 18 C -0.149 4.149 19 C -0.221 4.221 20 C -0.221 4.221 21 C -0.067 4.067 22 H 0.090 0.910 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.060 0.940 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.766 1.790 13.464 13.604 hybrid contribution 1.547 -0.899 -0.260 1.808 sum 2.314 0.891 13.204 13.435 Atomic orbital electron populations 1.21486 0.95294 0.98462 1.03053 1.21840 0.97620 0.98029 0.98253 1.19941 0.92519 0.90906 0.89774 0.98588 1.20877 1.31672 1.13123 0.87696 0.90111 1.24891 0.95656 0.96695 0.95828 1.69882 1.45723 1.40522 0.97714 0.86949 0.80969 0.84106 0.76775 1.20441 1.22537 1.19570 1.64725 1.55179 1.01074 1.01077 1.23204 0.97959 0.97164 0.91547 1.22468 1.01457 0.94177 0.96907 1.21691 0.97468 0.93465 0.96500 0.91597 1.22385 1.00848 0.94420 0.97248 1.22987 1.00054 0.95165 1.03923 1.22888 1.02648 1.04540 0.92041 1.22651 0.99168 0.92132 0.92791 0.91006 0.92896 0.95957 0.94912 0.93728 0.92719 0.90850 0.95027 0.92324 0.90890 0.87416 0.89123 0.89138 0.89257 0.89228 0.93982 0.90501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 9.52 37.16 0.35 -2.30 16 2 C -0.12 -2.67 4.89 -26.73 -0.13 -2.80 16 3 C 0.18 4.20 1.04 -68.86 -0.07 4.13 16 4 H 0.00 -0.08 7.05 -51.93 -0.37 -0.45 16 5 C -0.50 -13.73 7.42 -34.44 -0.26 -13.98 16 6 H 0.08 2.45 7.67 -52.49 -0.40 2.05 16 7 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.90 -27.39 13.96 55.43 0.77 -26.61 16 9 Si 0.88 22.15 24.38 -169.99 -4.14 18.01 16 10 H -0.28 -6.82 6.86 56.52 0.39 -6.43 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.27 -6.59 6.53 56.52 0.37 -6.22 16 13 N -0.50 -10.24 4.38 -223.88 -0.98 -11.22 16 14 C 0.03 0.51 5.41 -1.90 -0.01 0.50 16 15 C -0.11 -1.60 6.41 -24.87 -0.16 -1.76 16 16 C -0.07 -1.08 3.15 -89.27 -0.28 -1.36 16 17 H 0.07 0.95 7.96 -51.93 -0.41 0.53 16 18 C -0.13 -1.75 4.84 -90.62 -0.44 -2.19 16 19 C -0.18 -2.16 10.19 -26.73 -0.27 -2.43 16 20 C -0.18 -2.05 10.03 -26.73 -0.27 -2.32 16 21 C 0.06 1.17 5.46 -2.76 -0.02 1.15 16 22 H 0.07 1.71 7.09 -51.93 -0.37 1.34 16 23 H 0.05 1.05 7.73 -51.93 -0.40 0.65 16 24 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.65 6.98 -51.93 -0.36 0.29 16 26 H 0.04 1.05 3.25 -51.93 -0.17 0.88 16 27 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.07 1.21 7.68 -51.93 -0.40 0.81 16 29 H 0.03 0.55 8.00 -51.93 -0.42 0.13 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.03 7.86 -51.93 -0.41 0.62 16 32 H 0.11 1.54 7.96 -51.93 -0.41 1.13 16 33 H 0.09 1.03 8.08 -51.93 -0.42 0.61 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.04 0.87 7.69 -51.93 -0.40 0.47 16 38 H 0.08 1.56 7.42 -51.92 -0.39 1.17 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -29.07 288.47 -8.27 -37.34 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -6.62 Total: -0.42 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: -1.65 Total: -21.44 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.21 Total: -37.83 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.14 Total: 18.01 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.07 -8.27 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400221159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.092 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds