Wall clock time and date at job start Mon Mar 30 2020 02:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47323 * 2 1 4 4 H 1.08994 * 109.47517 * 179.06607 * 3 2 1 5 5 C 1.50705 * 109.47531 * 299.07035 * 3 2 1 6 6 H 1.07999 * 119.99818 * 119.99355 * 5 3 2 7 7 C 1.37873 * 119.99715 * 300.00269 * 5 3 2 8 8 N 1.31515 * 119.99676 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00062 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47195 * 90.00542 * 9 7 5 11 11 H 1.48505 * 109.47163 * 210.00515 * 9 7 5 12 12 H 1.48495 * 109.47292 * 330.00133 * 9 7 5 13 13 N 1.46909 * 109.46815 * 59.06758 * 3 2 1 14 14 C 1.48528 * 110.99635 * 59.79978 * 13 3 2 15 15 C 1.54940 * 103.22769 * 159.72029 * 14 13 3 16 16 C 1.54594 * 102.91695 * 322.58349 * 15 14 13 17 17 H 1.09001 * 110.39085 * 262.99270 * 16 15 14 18 18 C 1.53000 * 110.30618 * 140.87385 * 16 15 14 19 19 C 1.53004 * 117.49873 * 132.90295 * 18 16 15 20 20 C 1.52996 * 60.00012 * 252.51013 * 19 18 16 21 21 C 1.47900 * 110.99838 * 177.19048 * 13 3 2 22 22 H 1.08996 * 109.47281 * 55.34606 * 1 2 3 23 23 H 1.08998 * 109.46892 * 295.35119 * 1 2 3 24 24 H 1.09001 * 109.47381 * 175.35506 * 1 2 3 25 25 H 1.08997 * 109.47340 * 120.00424 * 2 1 3 26 26 H 1.09003 * 109.46895 * 240.00672 * 2 1 3 27 27 H 0.97002 * 119.99415 * 179.97438 * 8 7 5 28 28 H 1.09002 * 110.66623 * 278.15116 * 14 13 3 29 29 H 1.08998 * 110.67296 * 41.28655 * 14 13 3 30 30 H 1.08994 * 110.72478 * 204.22366 * 15 14 13 31 31 H 1.08998 * 110.87729 * 81.01161 * 15 14 13 32 32 H 1.09001 * 115.55266 * 278.61247 * 18 16 15 33 33 H 1.09000 * 117.49781 * 0.02562 * 19 18 16 34 34 H 1.08995 * 117.50066 * 145.01677 * 19 18 16 35 35 H 1.09000 * 117.49949 * 252.50663 * 20 19 18 36 36 H 1.08997 * 117.50077 * 107.49254 * 20 19 18 37 37 H 1.08997 * 109.92057 * 333.51211 * 21 13 3 38 38 H 1.09008 * 109.91698 * 94.80507 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 0.0167 5 6 1.5567 2.1463 -1.2418 6 1 0.9343 3.0249 -1.1569 7 6 1.9088 1.6685 -2.4862 8 7 1.4866 2.2824 -3.5699 9 14 2.9856 0.1492 -2.6330 10 1 2.1282 -1.0621 -2.6848 11 1 3.7965 0.2351 -3.8741 12 1 3.8883 0.0667 -1.4567 13 7 1.5320 2.1414 1.1881 14 6 1.9853 1.4717 2.4339 15 6 1.8314 2.5783 3.5075 16 6 2.2512 3.8576 2.7477 17 1 3.2955 4.0946 2.9510 18 6 1.3539 5.0308 3.1470 19 6 2.0360 6.3559 3.4931 20 6 1.4141 5.5034 4.6009 21 6 2.0597 3.5214 1.2572 22 1 -0.3633 0.5843 -0.8453 23 1 -0.3633 0.4400 0.9287 24 1 -0.3634 -1.0243 -0.0832 25 1 1.8933 -0.5139 0.8899 26 1 1.8933 -0.5137 -0.8901 27 1 1.7347 1.9464 -4.4454 28 1 1.3473 0.6190 2.6663 29 1 3.0267 1.1621 2.3473 30 1 2.4978 2.3938 4.3499 31 1 0.7973 2.6516 3.8443 32 1 0.3890 5.0779 2.6421 33 1 3.1239 6.3920 3.4360 34 1 1.5200 7.2751 3.2157 35 1 0.4890 5.8617 5.0524 36 1 2.0929 4.9785 5.2730 37 1 3.0160 3.5797 0.7376 38 1 1.3475 4.2142 0.8088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400221159.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:30 Heat of formation + Delta-G solvation = 7.743987 kcal Electronic energy + Delta-G solvation = -16070.825022 eV Core-core repulsion = 13720.047672 eV Total energy + Delta-G solvation = -2350.777351 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.40465 -38.06082 -35.72126 -33.81528 -31.18992 -29.79293 -28.27800 -25.13779 -23.44264 -23.04993 -22.58071 -20.83933 -20.65042 -18.43720 -17.30946 -16.66690 -16.55649 -15.74346 -15.33869 -14.95173 -14.66484 -14.40701 -13.99343 -13.63135 -13.34725 -13.03425 -12.87932 -12.48275 -12.44019 -12.30322 -12.21825 -12.08695 -11.83199 -11.71848 -11.40684 -11.27936 -10.95534 -10.92444 -10.67696 -10.61692 -9.03854 -8.27764 -6.28394 1.27327 1.31418 1.40943 2.30510 2.95696 3.06579 3.35835 3.69736 3.81659 3.94938 4.17067 4.28845 4.36560 4.40759 4.45210 4.52642 4.59329 4.69090 4.76115 4.83664 4.84846 4.94030 5.05300 5.08051 5.11829 5.19798 5.23798 5.30279 5.32069 5.32998 5.38147 5.52248 5.65154 5.75746 6.05380 6.31410 6.68771 6.76536 7.35263 8.89180 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036477 B = 0.007983 C = 0.007224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.419832 B = 3506.540225 C = 3874.900206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.120 4.120 3 C 0.181 3.819 4 H -0.017 1.017 5 C -0.490 4.490 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.941 3.059 10 H -0.264 1.264 11 H -0.299 1.299 12 H -0.255 1.255 13 N -0.510 5.510 14 C 0.026 3.974 15 C -0.100 4.100 16 C -0.060 4.060 17 H 0.076 0.924 18 C -0.154 4.154 19 C -0.185 4.185 20 C -0.160 4.160 21 C 0.061 3.939 22 H 0.033 0.967 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.264 0.736 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.016 0.984 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 0.413 16.676 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.073 3.927 4 H 0.000 1.000 5 C -0.529 4.529 6 H 0.054 0.946 7 C -0.182 4.182 8 N -0.589 5.589 9 Si 0.769 3.231 10 H -0.190 1.190 11 H -0.226 1.226 12 H -0.180 1.180 13 N -0.234 5.234 14 C -0.102 4.102 15 C -0.138 4.138 16 C -0.079 4.079 17 H 0.095 0.905 18 C -0.173 4.173 19 C -0.222 4.222 20 C -0.197 4.197 21 C -0.068 4.068 22 H 0.052 0.948 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.084 0.916 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.035 0.965 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.533 0.408 16.442 16.518 hybrid contribution 1.248 -0.359 -1.160 1.741 sum 2.781 0.049 15.282 15.533 Atomic orbital electron populations 1.21380 0.94628 0.99594 1.01872 1.21815 0.98208 0.96558 0.99226 1.19746 0.91501 0.92060 0.89417 0.99959 1.21042 1.30195 1.11776 0.89855 0.94627 1.25684 0.97218 0.99937 0.95402 1.70034 1.47856 1.42678 0.98363 0.85957 0.79469 0.80608 0.77047 1.18953 1.22642 1.17981 1.64615 1.55561 1.01670 1.01585 1.23343 0.98164 0.98323 0.90377 1.22453 1.02589 0.92077 0.96698 1.21571 0.98527 0.94787 0.93056 0.90517 1.22221 1.00194 0.95084 0.99770 1.23081 1.00380 0.94599 1.04091 1.22971 1.03206 1.02881 0.90637 1.22597 0.96861 0.91351 0.95971 0.94820 0.91901 0.93131 0.91611 0.94833 0.92682 0.89611 0.94869 0.89156 0.90384 0.89188 0.88655 0.88598 0.87976 0.87821 0.96509 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.52 71.98 0.69 -4.11 16 2 C -0.12 -5.13 4.89 30.59 0.15 -4.98 16 3 C 0.18 8.64 1.04 44.17 0.05 8.69 16 4 H -0.02 -0.85 7.05 -2.39 -0.02 -0.86 16 5 C -0.49 -28.32 7.42 25.60 0.19 -28.13 16 6 H 0.04 2.32 7.67 -2.91 -0.02 2.30 16 7 C 0.01 0.85 5.45 84.65 0.46 1.32 16 8 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 9 Si 0.94 45.92 24.38 68.60 1.67 47.59 16 10 H -0.26 -12.20 6.86 99.48 0.68 -11.52 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.26 -11.74 6.53 99.48 0.65 -11.09 16 13 N -0.51 -20.96 4.38 -862.23 -3.78 -24.74 16 14 C 0.03 0.81 5.41 86.65 0.47 1.28 16 15 C -0.10 -2.54 6.41 31.80 0.20 -2.33 16 16 C -0.06 -1.72 3.15 -9.92 -0.03 -1.75 16 17 H 0.08 2.04 7.96 -2.39 -0.02 2.02 16 18 C -0.15 -3.94 4.84 -10.79 -0.05 -3.99 16 19 C -0.18 -3.97 10.19 30.59 0.31 -3.66 16 20 C -0.16 -3.06 10.03 30.59 0.31 -2.75 16 21 C 0.06 2.39 5.46 86.44 0.47 2.86 16 22 H 0.03 1.60 7.09 -2.39 -0.02 1.59 16 23 H 0.06 2.40 7.73 -2.39 -0.02 2.38 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 2.37 6.98 -2.39 -0.02 2.36 16 26 H 0.03 1.50 3.25 -2.39 -0.01 1.50 16 27 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.09 2.51 7.68 -2.39 -0.02 2.49 16 29 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.93 7.86 -2.39 -0.02 1.91 16 32 H 0.09 2.61 7.96 -2.39 -0.02 2.59 16 33 H 0.09 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.02 0.72 7.69 -2.39 -0.02 0.70 16 38 H 0.05 2.19 7.42 -2.38 -0.02 2.18 16 Total: -1.00 -65.34 288.47 2.33 -63.02 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.92 Total: 11.51 kcal Atomic # 6 Polarization: -40.76 SS G_CDS: 3.21 Total: -37.55 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -3.48 Total: -84.56 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.67 Total: 47.59 kcal Total: -65.34 2.33 -63.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400221159.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.760 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds