Wall clock time and date at job start Mon Mar 30 2020 02:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46913 * 2 1 4 4 H 1.08991 * 109.47229 * 179.81960 * 3 2 1 5 5 C 1.50701 * 109.47058 * 299.82326 * 3 2 1 6 6 H 1.08001 * 120.00091 * 119.99922 * 5 3 2 7 7 C 1.37879 * 120.00150 * 299.99895 * 5 3 2 8 8 N 1.31518 * 119.99491 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00169 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47267 * 89.99935 * 9 7 5 11 11 H 1.48499 * 109.47334 * 209.99898 * 9 7 5 12 12 H 1.48503 * 109.47328 * 330.00094 * 9 7 5 13 13 N 1.46908 * 109.46740 * 59.82035 * 3 2 1 14 14 C 1.46893 * 110.99685 * 85.87872 * 13 3 2 15 15 C 1.53007 * 109.46880 * 175.73871 * 14 13 3 16 16 H 1.09003 * 110.66826 * 51.76801 * 15 14 13 17 17 C 1.54884 * 110.75742 * 288.32529 * 15 14 13 18 18 C 1.54260 * 104.19817 * 203.74125 * 17 15 14 19 19 H 1.08998 * 117.76105 * 163.96870 * 18 17 15 20 20 C 1.53005 * 118.19723 * 319.43711 * 18 17 15 21 21 C 1.53000 * 60.38017 * 93.61318 * 20 18 17 22 22 H 1.09000 * 119.75262 * 111.11890 * 21 20 18 23 23 C 1.54266 * 118.19707 * 266.38137 * 21 20 18 24 24 H 1.09005 * 109.46880 * 175.59396 * 1 2 3 25 25 H 1.08997 * 109.47739 * 295.59328 * 1 2 3 26 26 H 1.09000 * 109.47362 * 55.59796 * 1 2 3 27 27 H 1.09000 * 109.47455 * 240.00272 * 2 1 3 28 28 H 1.08995 * 109.46896 * 119.99695 * 2 1 3 29 29 H 0.96998 * 119.99361 * 180.02562 * 8 7 5 30 30 H 1.00897 * 110.99476 * 209.82940 * 13 3 2 31 31 H 1.08997 * 109.47223 * 295.73891 * 14 13 3 32 32 H 1.09004 * 109.47703 * 55.74068 * 14 13 3 33 33 H 1.09001 * 110.48636 * 322.42477 * 17 15 14 34 34 H 1.09001 * 110.48124 * 85.06340 * 17 15 14 35 35 H 1.08993 * 117.46267 * 346.01227 * 20 18 17 36 36 H 1.09003 * 117.45602 * 201.20821 * 20 18 17 37 37 H 1.08997 * 110.48855 * 281.89052 * 23 21 20 38 38 H 1.08997 * 110.48363 * 159.24714 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1299 1.4426 0.0032 5 6 1.5412 2.1517 -1.2327 6 1 0.9199 3.0299 -1.1363 7 6 1.8779 1.6794 -2.4835 8 7 2.6349 0.6103 -2.6008 9 14 1.2603 2.5587 -4.0114 10 1 2.2400 3.5997 -4.4135 11 1 1.0983 1.5787 -5.1152 12 1 -0.0486 3.1970 -3.7201 13 7 1.5467 2.1363 1.1973 14 6 2.4382 1.9086 2.3424 15 6 1.9519 2.7296 3.5385 16 1 0.8941 2.5458 3.7267 17 6 2.2198 4.2384 3.3139 18 6 2.2707 4.8297 4.7377 19 1 2.7074 5.8208 4.8606 20 6 1.2567 4.3255 5.7666 21 6 2.6372 3.6712 5.6819 22 1 3.3508 3.8066 6.4947 23 6 2.7962 2.4164 4.7988 24 1 -0.3633 -1.0247 -0.0790 25 1 -0.3634 0.4439 0.9268 26 1 -0.3634 0.5806 -0.8479 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.8721 0.2782 -3.4807 30 1 1.4293 3.1227 1.0210 31 1 2.4330 0.8500 2.6020 32 1 3.4514 2.2134 2.0803 33 1 3.1727 4.3852 2.8055 34 1 1.4082 4.6890 2.7425 35 1 0.4060 3.7540 5.3957 36 1 1.0547 4.9630 6.6274 37 1 2.4053 1.5373 5.3111 38 1 3.8422 2.2690 4.5302 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595530221.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:49 Heat of formation + Delta-G solvation = 6.010865 kcal Electronic energy + Delta-G solvation = -15649.534920 eV Core-core repulsion = 13298.682416 eV Total energy + Delta-G solvation = -2350.852504 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.62772 -36.21796 -33.28290 -31.34937 -29.77032 -28.08195 -26.49058 -24.32948 -23.03342 -21.82775 -19.64545 -19.03686 -18.87125 -16.55100 -15.63661 -15.26520 -14.81537 -13.88140 -13.53164 -13.23117 -13.13252 -12.86431 -12.30423 -12.23636 -11.82013 -11.55186 -11.24939 -11.00704 -10.90652 -10.66995 -10.50835 -10.40416 -10.25731 -10.00281 -9.87266 -9.61641 -9.44359 -9.30473 -8.73105 -8.43613 -7.16200 -5.99284 -4.04611 3.30367 3.37475 3.40999 3.74540 4.42059 4.56564 4.73166 4.99027 5.10284 5.21709 5.31973 5.54044 5.59413 5.67963 5.74222 5.80743 6.01426 6.03516 6.13615 6.18643 6.26441 6.32232 6.35195 6.56138 6.61879 6.72013 6.73801 6.90048 7.27625 7.38112 7.54063 7.78362 7.82851 7.89487 8.31847 8.45431 8.73644 9.05810 9.60118 11.06655 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.040158 B = 0.006192 C = 0.005786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.080603 B = 4521.133727 C = 4837.811218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.215 3.785 4 H -0.001 1.001 5 C -0.511 4.511 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.685 5.685 14 C 0.070 3.930 15 C -0.093 4.093 16 H 0.082 0.918 17 C -0.092 4.092 18 C -0.166 4.166 19 H 0.104 0.896 20 C -0.156 4.156 21 C -0.170 4.170 22 H 0.104 0.896 23 C -0.090 4.090 24 H 0.012 0.988 25 H 0.041 0.959 26 H 0.056 0.944 27 H 0.086 0.914 28 H 0.009 0.991 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.064 0.936 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 4.761 12.793 13.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.107 3.893 4 H 0.016 0.984 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.316 5.316 14 C -0.060 4.060 15 C -0.112 4.112 16 H 0.100 0.900 17 C -0.129 4.129 18 C -0.184 4.184 19 H 0.122 0.878 20 C -0.193 4.193 21 C -0.188 4.188 22 H 0.122 0.878 23 C -0.128 4.128 24 H 0.031 0.969 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.036 0.964 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.720 4.121 12.800 13.466 hybrid contribution 0.575 1.004 -1.070 1.576 sum -0.145 5.124 11.730 12.801 Atomic orbital electron populations 1.21444 0.97559 0.97329 1.01301 1.21424 0.94990 0.98344 0.99336 1.19133 0.92841 0.91488 0.85807 0.98364 1.21204 1.31501 1.11883 0.90410 0.92373 1.24891 0.95098 0.95002 0.98903 1.69892 1.36740 1.22759 1.23424 0.86587 0.79234 0.79340 0.82792 1.20851 1.21251 1.19866 1.60713 1.49027 1.15690 1.06206 1.21870 0.94034 0.98920 0.91153 1.22195 1.00100 0.94445 0.94456 0.90001 1.21986 1.01907 0.95025 0.94011 1.23156 1.04783 0.97841 0.92661 0.87809 1.22886 0.93181 1.02882 1.00320 1.23128 0.99010 0.95566 1.01085 0.87818 1.21942 1.00392 0.95904 0.94600 0.96859 0.93988 0.92541 0.89621 0.97265 0.93009 0.85388 0.92053 0.96389 0.91135 0.91228 0.88784 0.88884 0.91693 0.91097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.72 9.52 37.16 0.35 -2.37 16 2 C -0.10 -2.53 5.59 -26.73 -0.15 -2.68 16 3 C 0.21 5.40 2.30 -68.86 -0.16 5.24 16 4 H 0.00 -0.03 7.72 -51.93 -0.40 -0.44 16 5 C -0.51 -13.80 7.26 -34.44 -0.25 -14.05 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 8 N -0.89 -25.33 11.32 55.43 0.63 -24.71 16 9 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 13 N -0.69 -14.45 5.64 -107.95 -0.61 -15.06 16 14 C 0.07 1.27 5.02 -3.82 -0.02 1.25 16 15 C -0.09 -1.36 2.62 -88.62 -0.23 -1.60 16 16 H 0.08 1.25 7.39 -51.93 -0.38 0.87 16 17 C -0.09 -1.27 5.61 -25.08 -0.14 -1.41 16 18 C -0.17 -1.99 7.06 -89.50 -0.63 -2.62 16 19 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 20 C -0.16 -1.72 9.83 -26.73 -0.26 -1.98 16 21 C -0.17 -1.95 7.06 -89.50 -0.63 -2.59 16 22 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 23 C -0.09 -1.15 6.21 -25.07 -0.16 -1.30 16 24 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 25 H 0.04 0.91 7.74 -51.93 -0.40 0.51 16 26 H 0.06 1.38 7.07 -51.93 -0.37 1.02 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 28 H 0.01 0.20 7.60 -51.93 -0.39 -0.19 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.33 6.82 7.44 -39.29 -0.29 6.53 16 31 H 0.06 1.14 7.60 -51.93 -0.39 0.75 16 32 H 0.02 0.34 7.79 -51.93 -0.40 -0.07 16 33 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 34 H 0.07 0.98 8.00 -51.93 -0.42 0.57 16 35 H 0.09 1.09 7.21 -51.93 -0.37 0.71 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.90 8.05 -51.93 -0.42 0.48 16 LS Contribution 295.46 15.07 4.45 4.45 Total: -1.00 -27.47 295.46 -9.55 -37.02 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.62 Total: 4.56 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -2.37 Total: -22.47 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.02 Total: -39.77 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.47 -9.55 -37.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595530221.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.030 kcal (2) G-P(sol) polarization free energy of solvation -27.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds