Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46515 * 2 1 4 4 H 1.09000 * 109.47389 * 302.78468 * 3 2 1 5 5 C 1.50707 * 109.46706 * 182.78635 * 3 2 1 6 6 H 1.07999 * 119.99629 * 245.66230 * 5 3 2 7 7 C 1.37877 * 119.99725 * 65.66735 * 5 3 2 8 8 N 1.31521 * 119.99347 * 193.23501 * 7 5 3 9 9 Si 1.86791 * 120.00322 * 13.23767 * 7 5 3 10 10 H 1.48500 * 109.47496 * 85.99826 * 9 7 5 11 11 H 1.48505 * 109.47283 * 206.00143 * 9 7 5 12 12 H 1.48505 * 109.47354 * 325.99691 * 9 7 5 13 13 N 1.46898 * 109.46946 * 62.78990 * 3 2 1 14 14 C 1.46906 * 110.99839 * 208.76188 * 13 3 2 15 15 H 1.08999 * 110.04926 * 321.45160 * 14 13 3 16 16 C 1.54383 * 110.06984 * 82.99312 * 14 13 3 17 17 C 1.54922 * 104.22021 * 142.79013 * 16 14 13 18 18 C 1.54981 * 102.82239 * 322.28011 * 17 16 14 19 19 C 1.53479 * 110.06654 * 199.96370 * 14 13 3 20 20 C 1.52544 * 121.08945 * 24.83583 * 19 14 13 21 21 C 1.52575 * 121.05063 * 96.55218 * 19 14 13 22 22 H 1.09006 * 109.47166 * 64.90397 * 1 2 3 23 23 H 1.08998 * 109.46418 * 184.89668 * 1 2 3 24 24 H 1.08991 * 109.47160 * 304.90022 * 1 2 3 25 25 H 1.09002 * 109.47473 * 240.00544 * 2 1 3 26 26 H 1.08997 * 109.47307 * 119.99801 * 2 1 3 27 27 H 0.96998 * 119.99249 * 180.02562 * 8 7 5 28 28 H 1.00902 * 111.00247 * 84.80525 * 13 3 2 29 29 H 1.08998 * 110.48155 * 261.47839 * 16 14 13 30 30 H 1.09000 * 110.48067 * 24.10533 * 16 14 13 31 31 H 1.08999 * 110.74273 * 203.94377 * 17 16 14 32 32 H 1.09000 * 110.74168 * 80.61853 * 17 16 14 33 33 H 1.08998 * 110.51565 * 278.92021 * 18 17 16 34 34 H 1.09000 * 110.51184 * 156.21190 * 18 17 16 35 35 H 1.08999 * 117.51153 * 217.88582 * 20 19 14 36 36 H 1.09002 * 117.51269 * 2.96458 * 20 19 14 37 37 H 1.08997 * 117.50999 * 356.96669 * 21 19 14 38 38 H 1.09000 * 117.51034 * 142.02455 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6363 1.9707 -0.8640 5 6 3.5454 1.4432 -0.0691 6 1 4.1239 1.8151 0.7636 7 6 4.1839 0.9692 -1.1954 8 7 5.4758 0.7244 -1.1648 9 14 3.2144 0.6748 -2.7646 10 1 3.1340 1.9379 -3.5413 11 1 3.8942 -0.3646 -3.5788 12 1 1.8441 0.2167 -2.4213 13 7 1.6060 2.1153 1.2317 14 6 1.4476 3.5596 1.0150 15 1 2.2372 3.9280 0.3600 16 6 0.0641 3.8540 0.3963 17 6 -0.3764 5.1812 1.0630 18 6 0.1391 5.0238 2.5161 19 6 1.4884 4.3013 2.3581 20 6 2.2011 3.7031 3.5669 21 6 2.7788 4.9363 2.8675 22 1 -0.3634 0.4359 -0.9307 23 1 -0.3632 -1.0239 0.0877 24 1 -0.3633 0.5879 0.8428 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.9251 0.3913 -1.9572 28 1 2.2467 1.9314 1.9892 29 1 0.1479 3.9788 -0.6833 30 1 -0.6383 3.0555 0.6354 31 1 -1.4618 5.2797 1.0469 32 1 0.0969 6.0337 0.5757 33 1 -0.5517 4.4185 3.1030 34 1 0.2807 6.0004 2.9790 35 1 1.7418 3.8478 4.5447 36 1 2.7208 2.7552 3.4268 37 1 3.6783 4.7997 2.2673 38 1 2.6993 5.8925 3.3847 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597086900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = 11.250767 kcal Electronic energy + Delta-G solvation = -16224.698351 eV Core-core repulsion = 13874.073065 eV Total energy + Delta-G solvation = -2350.625285 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.14001 -35.70117 -33.71826 -32.07337 -31.10195 -27.52086 -26.09879 -24.33759 -22.45062 -22.06909 -20.54932 -19.23378 -18.16439 -16.92429 -15.43886 -15.08382 -14.78926 -14.62290 -13.72809 -13.21218 -12.94277 -12.66158 -12.36610 -12.23410 -11.78396 -11.58630 -11.16924 -11.02669 -10.98527 -10.74649 -10.69438 -10.39505 -10.26757 -10.02639 -9.85292 -9.64924 -9.56252 -9.27214 -9.11328 -8.45385 -7.25629 -6.12987 -4.09811 3.27662 3.36809 3.40069 4.10551 4.40640 4.78846 4.97250 5.10866 5.20247 5.22605 5.44272 5.54077 5.59447 5.92279 5.94751 6.04085 6.11426 6.12598 6.16634 6.20752 6.24347 6.35714 6.38977 6.45470 6.50393 6.54886 6.59695 6.75875 6.83651 6.86729 7.14459 7.26632 7.44250 7.63644 8.12878 8.44041 8.57742 8.93164 9.53859 11.00144 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.009610 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.166413 B = 2913.066423 C = 3252.407192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.186 3.814 4 H 0.026 0.974 5 C -0.547 4.547 6 H 0.069 0.931 7 C 0.077 3.923 8 N -0.894 5.894 9 Si 0.862 3.138 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.246 1.246 13 N -0.674 5.674 14 C 0.121 3.879 15 H 0.050 0.950 16 C -0.111 4.111 17 C -0.122 4.122 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.166 4.166 21 C -0.175 4.175 22 H 0.035 0.965 23 H 0.029 0.971 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 6.472 5.282 13.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C 0.077 3.923 4 H 0.043 0.957 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.689 3.311 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.170 1.170 13 N -0.305 5.305 14 C 0.011 3.989 15 H 0.068 0.932 16 C -0.149 4.149 17 C -0.160 4.160 18 C -0.119 4.119 19 C -0.124 4.124 20 C -0.203 4.203 21 C -0.212 4.212 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.154 0.846 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.659 6.246 5.069 13.354 hybrid contribution 0.825 0.070 -1.034 1.325 sum -9.834 6.316 4.035 12.364 Atomic orbital electron populations 1.21743 0.98052 0.99205 1.00997 1.21871 0.93359 0.99160 1.00716 1.19475 0.93671 0.90732 0.88412 0.95652 1.21705 0.90405 1.43120 1.03342 0.91287 1.24960 0.94666 0.94095 0.98889 1.69985 1.09640 1.44179 1.29325 0.87268 0.81974 0.78142 0.83696 1.20669 1.21558 1.16982 1.60940 1.53766 1.06993 1.08846 1.21441 0.96183 0.89020 0.92276 0.93243 1.22414 0.97246 0.96524 0.98742 1.22434 0.99689 0.98170 0.95664 1.21793 0.94534 0.98649 0.96959 1.21870 0.92922 1.01879 0.95693 1.22833 1.03868 0.97735 0.95868 1.22997 0.97386 0.96791 1.04066 0.94624 0.95138 0.91888 0.92861 0.93043 0.92754 0.84615 0.92526 0.90652 0.92030 0.91938 0.91393 0.92455 0.89315 0.88275 0.88705 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.85 37.16 0.37 -2.30 16 2 C -0.11 -2.48 4.98 -26.73 -0.13 -2.61 16 3 C 0.19 4.32 1.40 -68.86 -0.10 4.22 16 4 H 0.03 0.62 6.30 -51.93 -0.33 0.29 16 5 C -0.55 -15.03 8.91 -34.44 -0.31 -15.33 16 6 H 0.07 2.06 7.89 -52.49 -0.41 1.65 16 7 C 0.08 2.19 5.37 -17.82 -0.10 2.10 16 8 N -0.89 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.86 21.21 25.87 -169.99 -4.40 16.82 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.25 -5.68 5.31 56.52 0.30 -5.38 16 13 N -0.67 -13.54 5.26 -99.92 -0.53 -14.06 16 14 C 0.12 2.22 2.91 -66.74 -0.19 2.03 16 15 H 0.05 1.05 7.85 -51.93 -0.41 0.65 16 16 C -0.11 -1.79 6.18 -24.99 -0.15 -1.94 16 17 C -0.12 -1.60 6.91 -24.67 -0.17 -1.77 16 18 C -0.08 -1.08 6.58 -25.23 -0.17 -1.24 16 19 C -0.12 -1.91 2.35 -154.26 -0.36 -2.27 16 20 C -0.17 -2.45 9.68 -26.92 -0.26 -2.71 16 21 C -0.18 -2.60 10.24 -26.90 -0.28 -2.87 16 22 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 1.14 7.55 -51.93 -0.39 0.75 16 25 H 0.05 1.24 4.69 -51.93 -0.24 0.99 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.20 16 28 H 0.33 6.86 5.65 -39.29 -0.22 6.64 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.67 8.11 -51.93 -0.42 0.25 16 35 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.10 1.60 6.29 -51.93 -0.33 1.28 16 37 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 38 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 292.08 15.07 4.40 4.40 Total: -1.00 -28.64 292.08 -8.23 -36.87 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.64 Total: 7.07 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: -1.85 Total: -24.70 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.25 Total: -40.45 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.40 Total: 16.82 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.64 -8.23 -36.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597086900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.120 kcal (2) G-P(sol) polarization free energy of solvation -28.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds