Wall clock time and date at job start Mon Mar 30 2020 02:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46515 * 2 1 4 4 H 1.09000 * 109.47389 * 302.78468 * 3 2 1 5 5 C 1.50707 * 109.46706 * 182.78635 * 3 2 1 6 6 H 1.07999 * 119.99629 * 245.66230 * 5 3 2 7 7 C 1.37877 * 119.99725 * 65.66735 * 5 3 2 8 8 N 1.31521 * 119.99347 * 193.23501 * 7 5 3 9 9 Si 1.86791 * 120.00322 * 13.23767 * 7 5 3 10 10 H 1.48500 * 109.47496 * 85.99826 * 9 7 5 11 11 H 1.48505 * 109.47283 * 206.00143 * 9 7 5 12 12 H 1.48505 * 109.47354 * 325.99691 * 9 7 5 13 13 N 1.46898 * 109.46946 * 62.78990 * 3 2 1 14 14 C 1.46906 * 110.99839 * 208.76188 * 13 3 2 15 15 H 1.08999 * 110.04926 * 321.45160 * 14 13 3 16 16 C 1.54383 * 110.06984 * 82.99312 * 14 13 3 17 17 C 1.54922 * 104.22021 * 142.79013 * 16 14 13 18 18 C 1.54981 * 102.82239 * 322.28011 * 17 16 14 19 19 C 1.53479 * 110.06654 * 199.96370 * 14 13 3 20 20 C 1.52544 * 121.08945 * 24.83583 * 19 14 13 21 21 C 1.52575 * 121.05063 * 96.55218 * 19 14 13 22 22 H 1.09006 * 109.47166 * 64.90397 * 1 2 3 23 23 H 1.08998 * 109.46418 * 184.89668 * 1 2 3 24 24 H 1.08991 * 109.47160 * 304.90022 * 1 2 3 25 25 H 1.09002 * 109.47473 * 240.00544 * 2 1 3 26 26 H 1.08997 * 109.47307 * 119.99801 * 2 1 3 27 27 H 0.96998 * 119.99249 * 180.02562 * 8 7 5 28 28 H 1.00902 * 111.00247 * 84.80525 * 13 3 2 29 29 H 1.08998 * 110.48155 * 261.47839 * 16 14 13 30 30 H 1.09000 * 110.48067 * 24.10533 * 16 14 13 31 31 H 1.08999 * 110.74273 * 203.94377 * 17 16 14 32 32 H 1.09000 * 110.74168 * 80.61853 * 17 16 14 33 33 H 1.08998 * 110.51565 * 278.92021 * 18 17 16 34 34 H 1.09000 * 110.51184 * 156.21190 * 18 17 16 35 35 H 1.08999 * 117.51153 * 217.88582 * 20 19 14 36 36 H 1.09002 * 117.51269 * 2.96458 * 20 19 14 37 37 H 1.08997 * 117.50999 * 356.96669 * 21 19 14 38 38 H 1.09000 * 117.51034 * 142.02455 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6363 1.9707 -0.8640 5 6 3.5454 1.4432 -0.0691 6 1 4.1239 1.8151 0.7636 7 6 4.1839 0.9692 -1.1954 8 7 5.4758 0.7244 -1.1648 9 14 3.2144 0.6748 -2.7646 10 1 3.1340 1.9379 -3.5413 11 1 3.8942 -0.3646 -3.5788 12 1 1.8441 0.2167 -2.4213 13 7 1.6060 2.1153 1.2317 14 6 1.4476 3.5596 1.0150 15 1 2.2372 3.9280 0.3600 16 6 0.0641 3.8540 0.3963 17 6 -0.3764 5.1812 1.0630 18 6 0.1391 5.0238 2.5161 19 6 1.4884 4.3013 2.3581 20 6 2.2011 3.7031 3.5669 21 6 2.7788 4.9363 2.8675 22 1 -0.3634 0.4359 -0.9307 23 1 -0.3632 -1.0239 0.0877 24 1 -0.3633 0.5879 0.8428 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 5.9251 0.3913 -1.9572 28 1 2.2467 1.9314 1.9892 29 1 0.1479 3.9788 -0.6833 30 1 -0.6383 3.0555 0.6354 31 1 -1.4618 5.2797 1.0469 32 1 0.0969 6.0337 0.5757 33 1 -0.5517 4.4185 3.1030 34 1 0.2807 6.0004 2.9790 35 1 1.7418 3.8478 4.5447 36 1 2.7208 2.7552 3.4268 37 1 3.6783 4.7997 2.2673 38 1 2.6993 5.8925 3.3847 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597086900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:55 Heat of formation + Delta-G solvation = -5.894504 kcal Electronic energy + Delta-G solvation = -16225.441825 eV Core-core repulsion = 13874.073065 eV Total energy + Delta-G solvation = -2351.368760 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45633 -37.43341 -34.96429 -34.17445 -32.65873 -29.23411 -27.55058 -25.76898 -24.20350 -23.33025 -21.94437 -20.86948 -19.58433 -18.93497 -17.03409 -16.54843 -16.40644 -15.91723 -15.39791 -14.90469 -14.57476 -14.23066 -13.77228 -13.72579 -13.33496 -13.21103 -12.90952 -12.61976 -12.41418 -12.24485 -12.07063 -11.85581 -11.55987 -11.54243 -11.39748 -11.32833 -11.06193 -11.01799 -10.67725 -10.52719 -9.00785 -8.36089 -6.37082 1.30118 1.33172 1.43455 2.30841 2.86514 2.99874 3.56880 3.64933 3.83876 4.02904 4.14553 4.38431 4.42068 4.45904 4.58802 4.67720 4.74201 4.78141 4.84071 4.91564 4.98056 5.02726 5.11800 5.18414 5.21617 5.23228 5.28534 5.29356 5.36836 5.44334 5.51073 5.54538 5.62765 5.75223 6.10373 6.45998 6.66780 6.84457 7.30868 8.80452 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.009610 C = 0.008607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.166413 B = 2913.066423 C = 3252.407192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 C 0.194 3.806 4 H 0.021 0.979 5 C -0.548 4.548 6 H 0.026 0.974 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.924 3.076 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.219 1.219 13 N -0.661 5.661 14 C 0.113 3.887 15 H 0.007 0.993 16 C -0.110 4.110 17 C -0.114 4.114 18 C -0.074 4.074 19 C -0.130 4.130 20 C -0.162 4.162 21 C -0.175 4.175 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.328 0.672 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.283 7.170 5.612 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.084 3.916 4 H 0.039 0.961 5 C -0.586 4.586 6 H 0.044 0.956 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.748 3.252 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.141 1.141 13 N -0.292 5.292 14 C 0.002 3.998 15 H 0.025 0.975 16 C -0.148 4.148 17 C -0.152 4.152 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.200 4.200 21 C -0.212 4.212 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.147 0.853 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.812 6.953 5.412 16.383 hybrid contribution 1.909 -0.122 -1.060 2.187 sum -11.904 6.831 4.352 14.398 Atomic orbital electron populations 1.21632 0.94816 1.00939 1.01560 1.21796 0.96188 0.97433 0.99770 1.19344 0.90518 0.92153 0.89610 0.96119 1.22017 0.92840 1.41890 1.01893 0.95581 1.25828 0.95572 0.94100 1.02415 1.70127 1.11656 1.46107 1.30382 0.86269 0.81796 0.78079 0.79070 1.20434 1.21367 1.14126 1.61021 1.52613 1.08282 1.07242 1.21582 0.96492 0.87900 0.93789 0.97486 1.22384 0.95463 0.98537 0.98387 1.22428 1.01321 0.96201 0.95203 1.21803 0.92607 0.99524 0.97183 1.21935 0.94714 1.02161 0.94258 1.22855 1.03517 0.96626 0.96959 1.23006 0.96066 0.98254 1.03923 0.94025 0.92834 0.91349 0.94022 0.93891 0.92690 0.85297 0.93357 0.90504 0.89410 0.91661 0.90371 0.90242 0.86468 0.90588 0.91662 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.85 71.98 0.71 -3.84 16 2 C -0.11 -4.88 4.98 30.60 0.15 -4.72 16 3 C 0.19 9.06 1.40 44.17 0.06 9.12 16 4 H 0.02 1.00 6.30 -2.39 -0.02 0.99 16 5 C -0.55 -31.39 8.91 25.60 0.23 -31.16 16 6 H 0.03 1.67 7.89 -2.91 -0.02 1.65 16 7 C 0.02 1.13 5.37 84.65 0.45 1.59 16 8 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 9 Si 0.92 44.18 25.87 68.60 1.77 45.95 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.22 -9.43 5.31 99.48 0.53 -8.90 16 13 N -0.66 -26.80 5.26 -470.04 -2.47 -29.27 16 14 C 0.11 4.14 2.91 45.54 0.13 4.27 16 15 H 0.01 0.32 7.85 -2.39 -0.02 0.30 16 16 C -0.11 -3.34 6.18 31.72 0.20 -3.15 16 17 C -0.11 -2.62 6.91 31.93 0.22 -2.40 16 18 C -0.07 -1.68 6.58 31.57 0.21 -1.47 16 19 C -0.13 -3.87 2.35 -52.02 -0.12 -3.99 16 20 C -0.16 -4.65 9.68 30.47 0.29 -4.36 16 21 C -0.18 -5.11 10.24 30.48 0.31 -4.80 16 22 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 24 H 0.07 2.28 7.55 -2.39 -0.02 2.26 16 25 H 0.04 1.87 4.69 -2.39 -0.01 1.86 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 27 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 28 H 0.33 13.96 5.65 -89.69 -0.51 13.45 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.08 2.33 8.05 -2.39 -0.02 2.31 16 31 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.50 8.11 -2.39 -0.02 1.48 16 35 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 36 H 0.08 2.53 6.29 -2.39 -0.02 2.52 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -64.24 292.08 2.78 -61.46 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.33 Total: 26.07 kcal Atomic # 6 Polarization: -47.75 SS G_CDS: 2.85 Total: -44.90 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -2.18 Total: -88.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.77 Total: 45.95 kcal Total: -64.24 2.78 -61.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597086900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.565 kcal (2) G-P(sol) polarization free energy of solvation -64.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds