Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47354 * 2 1 4 4 N 1.46895 * 109.47351 * 120.00229 * 2 1 3 5 5 C 1.47446 * 110.99794 * 302.88832 * 4 2 1 6 6 C 1.54316 * 107.23334 * 123.25457 * 5 4 2 7 7 C 1.55138 * 103.01929 * 22.28703 * 6 5 4 8 8 C 1.47844 * 111.00189 * 63.73000 * 4 2 1 9 9 H 1.09004 * 110.37005 * 332.57682 * 8 4 2 10 10 C 1.52997 * 110.37478 * 94.81026 * 8 4 2 11 11 C 1.50706 * 109.46913 * 294.63618 * 10 8 4 12 12 C 1.35040 * 119.99664 * 125.29618 * 11 10 8 13 13 C 1.40065 * 119.99709 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00191 * 359.97438 * 13 12 11 15 15 C 1.40305 * 120.00188 * 180.02562 * 13 12 11 16 16 N 1.30693 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47199 * 119.99823 * 17 15 13 20 20 H 1.48503 * 109.47221 * 239.99808 * 17 15 13 21 21 H 1.09000 * 109.46997 * 294.56168 * 1 2 3 22 22 H 1.09005 * 109.47312 * 54.55448 * 1 2 3 23 23 H 1.08994 * 109.47362 * 174.55725 * 1 2 3 24 24 H 1.09007 * 109.46972 * 240.00335 * 2 1 3 25 25 H 1.08999 * 109.47355 * 183.18120 * 3 2 1 26 26 H 1.09004 * 109.46962 * 303.18469 * 3 2 1 27 27 H 1.08995 * 109.47219 * 63.17684 * 3 2 1 28 28 H 1.08994 * 109.89112 * 242.66334 * 5 4 2 29 29 H 1.09009 * 109.89096 * 3.68839 * 5 4 2 30 30 H 1.09006 * 110.70443 * 140.66304 * 6 5 4 31 31 H 1.08998 * 110.70691 * 263.72646 * 6 5 4 32 32 H 1.09001 * 110.98896 * 206.25455 * 7 6 5 33 33 H 1.09005 * 110.99373 * 82.43329 * 7 6 5 34 34 H 1.08998 * 109.47501 * 174.63788 * 10 8 4 35 35 H 1.09004 * 109.47003 * 54.63271 * 10 8 4 36 36 H 1.07999 * 119.99961 * 305.30191 * 11 10 8 37 37 H 1.08000 * 119.99889 * 0.02562 * 12 11 10 38 38 H 0.96996 * 119.99790 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4911 -0.0652 2.4245 6 6 0.7512 -1.1629 3.2176 7 6 1.3866 -2.4716 2.6789 8 6 1.6204 -2.1160 1.1895 9 1 0.7021 -2.2485 0.6173 10 6 2.7402 -2.9793 0.6051 11 6 2.9380 -2.6296 -0.8474 12 6 4.1602 -2.2694 -1.2947 13 6 4.3440 -1.9439 -2.6446 14 1 3.5084 -1.9814 -3.3278 15 6 5.6139 -1.5702 -3.1095 16 7 6.6253 -1.5252 -2.2829 17 14 5.8589 -1.1354 -4.9096 18 1 4.5667 -1.2633 -5.6301 19 1 6.3510 0.2614 -5.0189 20 1 6.8540 -2.0592 -5.5110 21 1 -0.3633 0.4272 0.9347 22 1 -0.3634 0.5960 -0.8372 23 1 -0.3634 -1.0230 -0.0975 24 1 1.8933 -0.5138 -0.8901 25 1 3.1285 1.4430 -0.0570 26 1 1.6308 1.9726 -0.8601 27 1 1.7240 1.9396 0.9170 28 1 2.3118 0.3337 3.0207 29 1 0.7999 0.7360 2.1624 30 1 0.9357 -1.0566 4.2867 31 1 -0.3180 -1.1356 3.0078 32 1 0.6965 -3.3097 2.7766 33 1 2.3299 -2.6838 3.1823 34 1 2.4706 -4.0318 0.6919 35 1 3.6646 -2.7946 1.1524 36 1 2.1024 -2.6671 -1.5305 37 1 4.9959 -2.2323 -0.6116 38 1 7.5033 -1.2672 -2.6044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687681471.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = -5.992041 kcal Electronic energy + Delta-G solvation = -15939.217257 eV Core-core repulsion = 13587.844268 eV Total energy + Delta-G solvation = -2351.372990 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21568 -34.27055 -33.86353 -32.26418 -29.41668 -28.50909 -26.80064 -26.01845 -23.30093 -21.53921 -20.11799 -18.54747 -18.13312 -16.67158 -16.34461 -14.91815 -14.72729 -13.89777 -13.53027 -13.30128 -12.99440 -12.78492 -12.35862 -11.97137 -11.69566 -11.61156 -11.26512 -11.20689 -11.04195 -10.93361 -10.75794 -10.52756 -10.42384 -10.35412 -9.97639 -9.84421 -9.37836 -9.37520 -9.07342 -7.61835 -7.34202 -6.60165 -4.08196 3.01781 3.15931 3.22184 4.05251 4.08278 4.55590 5.03610 5.10984 5.26663 5.48120 5.59287 5.61234 5.76603 5.83647 5.84775 5.95722 6.02969 6.05902 6.15554 6.21338 6.24298 6.32596 6.44702 6.57389 6.66167 6.74368 6.91608 6.96508 7.04782 7.32741 7.44272 7.46410 7.82159 7.88217 8.15256 8.59349 8.85184 9.27690 9.44750 10.43906 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034354 B = 0.007270 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.857066 B = 3850.623863 C = 4212.704040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.069 3.931 3 C -0.139 4.139 4 N -0.501 5.501 5 C 0.035 3.965 6 C -0.141 4.141 7 C -0.128 4.128 8 C 0.079 3.921 9 H 0.048 0.952 10 C -0.025 4.025 11 C -0.409 4.409 12 C 0.060 3.940 13 C -0.464 4.464 14 H 0.064 0.936 15 C 0.073 3.927 16 N -0.824 5.824 17 Si 0.906 3.094 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.276 1.276 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.111 0.889 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.028 0.972 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.529 3.111 6.450 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 C -0.197 4.197 4 N -0.225 5.225 5 C -0.093 4.093 6 C -0.180 4.180 7 C -0.167 4.167 8 C -0.028 4.028 9 H 0.066 0.934 10 C -0.062 4.062 11 C -0.431 4.431 12 C 0.040 3.960 13 C -0.495 4.495 14 H 0.083 0.917 15 C -0.142 4.142 16 N -0.452 5.452 17 Si 0.731 3.269 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.201 1.201 21 H 0.068 0.932 22 H 0.072 0.928 23 H 0.072 0.928 24 H 0.129 0.871 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.713 3.216 6.444 10.553 hybrid contribution -0.737 0.269 -0.865 1.168 sum -8.450 3.485 5.579 10.709 Atomic orbital electron populations 1.22533 0.99162 1.01482 1.01122 1.21957 0.91073 0.95170 0.95792 1.21808 1.02358 0.95373 1.00119 1.63608 1.56701 1.01787 1.00369 1.22877 0.97445 0.96535 0.92468 1.22762 0.99211 0.96316 0.99707 1.22799 1.00506 0.96424 0.96940 1.22712 0.98027 0.88494 0.93613 0.93440 1.19924 0.95748 0.94404 0.96156 1.21797 0.97242 1.30461 0.93550 1.19851 0.93805 0.88169 0.94143 1.19577 0.93858 1.40029 0.96007 0.91735 1.26048 0.95999 0.92825 0.99364 1.69588 1.01135 1.37935 1.36525 0.86311 0.79103 0.78533 0.82935 1.18638 1.20075 1.20109 0.93175 0.92766 0.92773 0.87141 0.91678 0.93082 0.93773 0.91540 0.92840 0.91715 0.92292 0.91821 0.90969 0.95325 0.93398 0.91700 0.90500 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.62 37.16 0.32 -2.49 16 2 C 0.07 1.24 2.77 -67.72 -0.19 1.05 16 3 C -0.14 -2.30 9.16 37.16 0.34 -1.96 16 4 N -0.50 -9.17 4.72 -215.47 -1.02 -10.18 16 5 C 0.03 0.53 5.48 -2.84 -0.02 0.51 16 6 C -0.14 -1.88 6.94 -24.91 -0.17 -2.06 16 7 C -0.13 -1.93 6.50 -24.59 -0.16 -2.09 16 8 C 0.08 1.45 2.34 -66.19 -0.16 1.29 16 9 H 0.05 0.88 5.85 -51.93 -0.30 0.58 16 10 C -0.02 -0.53 5.40 -27.88 -0.15 -0.68 16 11 C -0.41 -10.18 6.95 -35.44 -0.25 -10.42 16 12 C 0.06 1.67 9.00 -40.03 -0.36 1.31 16 13 C -0.46 -13.01 9.05 -38.12 -0.35 -13.36 16 14 H 0.06 1.79 7.85 -52.48 -0.41 1.38 16 15 C 0.07 1.95 5.50 -17.26 -0.09 1.85 16 16 N -0.82 -22.72 12.86 55.57 0.71 -22.00 16 17 Si 0.91 19.89 29.56 -169.99 -5.03 14.86 16 18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 21 H 0.05 0.70 6.01 -51.93 -0.31 0.39 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16 24 H 0.11 2.40 5.97 -51.93 -0.31 2.09 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.65 6.60 -51.93 -0.34 0.30 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.05 0.76 4.79 -51.92 -0.25 0.51 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16 36 H 0.06 1.66 8.01 -52.49 -0.42 1.24 16 37 H 0.08 2.27 7.27 -52.49 -0.38 1.89 16 38 H 0.28 6.95 8.29 -40.82 -0.34 6.61 16 LS Contribution 294.24 15.07 4.43 4.43 Total: -1.00 -27.59 294.24 -8.53 -36.12 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.40 Total: 3.81 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: -1.23 Total: -27.03 kcal Atomic # 7 Polarization: -31.88 SS G_CDS: -0.30 Total: -32.19 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.59 -8.53 -36.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681471.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.126 kcal (2) G-P(sol) polarization free energy of solvation -27.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds