Wall clock time and date at job start Mon Mar 30 2020 02:44:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47354 * 2 1
4 4 N 1.46895 * 109.47351 * 120.00229 * 2 1 3
5 5 C 1.47446 * 110.99794 * 302.88832 * 4 2 1
6 6 C 1.54316 * 107.23334 * 123.25457 * 5 4 2
7 7 C 1.55138 * 103.01929 * 22.28703 * 6 5 4
8 8 C 1.47844 * 111.00189 * 63.73000 * 4 2 1
9 9 H 1.09004 * 110.37005 * 332.57682 * 8 4 2
10 10 C 1.52997 * 110.37478 * 94.81026 * 8 4 2
11 11 C 1.50706 * 109.46913 * 294.63618 * 10 8 4
12 12 C 1.35040 * 119.99664 * 125.29618 * 11 10 8
13 13 C 1.40065 * 119.99709 * 180.02562 * 12 11 10
14 14 H 1.08004 * 120.00191 * 359.97438 * 13 12 11
15 15 C 1.40305 * 120.00188 * 180.02562 * 13 12 11
16 16 N 1.30693 * 119.99715 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 120.00405 * 180.02562 * 15 13 12
18 18 H 1.48501 * 109.47139 * 359.97438 * 17 15 13
19 19 H 1.48497 * 109.47199 * 119.99823 * 17 15 13
20 20 H 1.48503 * 109.47221 * 239.99808 * 17 15 13
21 21 H 1.09000 * 109.46997 * 294.56168 * 1 2 3
22 22 H 1.09005 * 109.47312 * 54.55448 * 1 2 3
23 23 H 1.08994 * 109.47362 * 174.55725 * 1 2 3
24 24 H 1.09007 * 109.46972 * 240.00335 * 2 1 3
25 25 H 1.08999 * 109.47355 * 183.18120 * 3 2 1
26 26 H 1.09004 * 109.46962 * 303.18469 * 3 2 1
27 27 H 1.08995 * 109.47219 * 63.17684 * 3 2 1
28 28 H 1.08994 * 109.89112 * 242.66334 * 5 4 2
29 29 H 1.09009 * 109.89096 * 3.68839 * 5 4 2
30 30 H 1.09006 * 110.70443 * 140.66304 * 6 5 4
31 31 H 1.08998 * 110.70691 * 263.72646 * 6 5 4
32 32 H 1.09001 * 110.98896 * 206.25455 * 7 6 5
33 33 H 1.09005 * 110.99373 * 82.43329 * 7 6 5
34 34 H 1.08998 * 109.47501 * 174.63788 * 10 8 4
35 35 H 1.09004 * 109.47003 * 54.63271 * 10 8 4
36 36 H 1.07999 * 119.99961 * 305.30191 * 11 10 8
37 37 H 1.08000 * 119.99889 * 0.02562 * 12 11 10
38 38 H 0.96996 * 119.99790 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 1.4911 -0.0652 2.4245
6 6 0.7512 -1.1629 3.2176
7 6 1.3866 -2.4716 2.6789
8 6 1.6204 -2.1160 1.1895
9 1 0.7021 -2.2485 0.6173
10 6 2.7402 -2.9793 0.6051
11 6 2.9380 -2.6296 -0.8474
12 6 4.1602 -2.2694 -1.2947
13 6 4.3440 -1.9439 -2.6446
14 1 3.5084 -1.9814 -3.3278
15 6 5.6139 -1.5702 -3.1095
16 7 6.6253 -1.5252 -2.2829
17 14 5.8589 -1.1354 -4.9096
18 1 4.5667 -1.2633 -5.6301
19 1 6.3510 0.2614 -5.0189
20 1 6.8540 -2.0592 -5.5110
21 1 -0.3633 0.4272 0.9347
22 1 -0.3634 0.5960 -0.8372
23 1 -0.3634 -1.0230 -0.0975
24 1 1.8933 -0.5138 -0.8901
25 1 3.1285 1.4430 -0.0570
26 1 1.6308 1.9726 -0.8601
27 1 1.7240 1.9396 0.9170
28 1 2.3118 0.3337 3.0207
29 1 0.7999 0.7360 2.1624
30 1 0.9357 -1.0566 4.2867
31 1 -0.3180 -1.1356 3.0078
32 1 0.6965 -3.3097 2.7766
33 1 2.3299 -2.6838 3.1823
34 1 2.4706 -4.0318 0.6919
35 1 3.6646 -2.7946 1.1524
36 1 2.1024 -2.6671 -1.5305
37 1 4.9959 -2.2323 -0.6116
38 1 7.5033 -1.2672 -2.6044
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000687681471.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:30
Heat of formation + Delta-G solvation = -5.992041 kcal
Electronic energy + Delta-G solvation = -15939.217257 eV
Core-core repulsion = 13587.844268 eV
Total energy + Delta-G solvation = -2351.372990 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.21568 -34.27055 -33.86353 -32.26418 -29.41668 -28.50909 -26.80064 -26.01845
-23.30093 -21.53921 -20.11799 -18.54747 -18.13312 -16.67158 -16.34461 -14.91815
-14.72729 -13.89777 -13.53027 -13.30128 -12.99440 -12.78492 -12.35862 -11.97137
-11.69566 -11.61156 -11.26512 -11.20689 -11.04195 -10.93361 -10.75794 -10.52756
-10.42384 -10.35412 -9.97639 -9.84421 -9.37836 -9.37520 -9.07342 -7.61835
-7.34202 -6.60165 -4.08196 3.01781 3.15931 3.22184 4.05251 4.08278
4.55590 5.03610 5.10984 5.26663 5.48120 5.59287 5.61234 5.76603
5.83647 5.84775 5.95722 6.02969 6.05902 6.15554 6.21338 6.24298
6.32596 6.44702 6.57389 6.66167 6.74368 6.91608 6.96508 7.04782
7.32741 7.44272 7.46410 7.82159 7.88217 8.15256 8.59349 8.85184
9.27690 9.44750 10.43906
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.034354 B = 0.007270 C = 0.006645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.857066 B = 3850.623863 C = 4212.704040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.069 3.931
3 C -0.139 4.139
4 N -0.501 5.501
5 C 0.035 3.965
6 C -0.141 4.141
7 C -0.128 4.128
8 C 0.079 3.921
9 H 0.048 0.952
10 C -0.025 4.025
11 C -0.409 4.409
12 C 0.060 3.940
13 C -0.464 4.464
14 H 0.064 0.936
15 C 0.073 3.927
16 N -0.824 5.824
17 Si 0.906 3.094
18 H -0.263 1.263
19 H -0.275 1.275
20 H -0.276 1.276
21 H 0.049 0.951
22 H 0.053 0.947
23 H 0.053 0.947
24 H 0.111 0.889
25 H 0.064 0.936
26 H 0.050 0.950
27 H 0.043 0.957
28 H 0.066 0.934
29 H 0.053 0.947
30 H 0.064 0.936
31 H 0.058 0.942
32 H 0.063 0.937
33 H 0.072 0.928
34 H 0.028 0.972
35 H 0.047 0.953
36 H 0.065 0.935
37 H 0.077 0.923
38 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.529 3.111 6.450 11.136
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.040 4.040
3 C -0.197 4.197
4 N -0.225 5.225
5 C -0.093 4.093
6 C -0.180 4.180
7 C -0.167 4.167
8 C -0.028 4.028
9 H 0.066 0.934
10 C -0.062 4.062
11 C -0.431 4.431
12 C 0.040 3.960
13 C -0.495 4.495
14 H 0.083 0.917
15 C -0.142 4.142
16 N -0.452 5.452
17 Si 0.731 3.269
18 H -0.186 1.186
19 H -0.201 1.201
20 H -0.201 1.201
21 H 0.068 0.932
22 H 0.072 0.928
23 H 0.072 0.928
24 H 0.129 0.871
25 H 0.083 0.917
26 H 0.069 0.931
27 H 0.062 0.938
28 H 0.085 0.915
29 H 0.072 0.928
30 H 0.083 0.917
31 H 0.077 0.923
32 H 0.082 0.918
33 H 0.090 0.910
34 H 0.047 0.953
35 H 0.066 0.934
36 H 0.083 0.917
37 H 0.095 0.905
38 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -7.713 3.216 6.444 10.553
hybrid contribution -0.737 0.269 -0.865 1.168
sum -8.450 3.485 5.579 10.709
Atomic orbital electron populations
1.22533 0.99162 1.01482 1.01122 1.21957 0.91073 0.95170 0.95792
1.21808 1.02358 0.95373 1.00119 1.63608 1.56701 1.01787 1.00369
1.22877 0.97445 0.96535 0.92468 1.22762 0.99211 0.96316 0.99707
1.22799 1.00506 0.96424 0.96940 1.22712 0.98027 0.88494 0.93613
0.93440 1.19924 0.95748 0.94404 0.96156 1.21797 0.97242 1.30461
0.93550 1.19851 0.93805 0.88169 0.94143 1.19577 0.93858 1.40029
0.96007 0.91735 1.26048 0.95999 0.92825 0.99364 1.69588 1.01135
1.37935 1.36525 0.86311 0.79103 0.78533 0.82935 1.18638 1.20075
1.20109 0.93175 0.92766 0.92773 0.87141 0.91678 0.93082 0.93773
0.91540 0.92840 0.91715 0.92292 0.91821 0.90969 0.95325 0.93398
0.91700 0.90500 0.91244
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.81 8.62 37.16 0.32 -2.49 16
2 C 0.07 1.24 2.77 -67.72 -0.19 1.05 16
3 C -0.14 -2.30 9.16 37.16 0.34 -1.96 16
4 N -0.50 -9.17 4.72 -215.47 -1.02 -10.18 16
5 C 0.03 0.53 5.48 -2.84 -0.02 0.51 16
6 C -0.14 -1.88 6.94 -24.91 -0.17 -2.06 16
7 C -0.13 -1.93 6.50 -24.59 -0.16 -2.09 16
8 C 0.08 1.45 2.34 -66.19 -0.16 1.29 16
9 H 0.05 0.88 5.85 -51.93 -0.30 0.58 16
10 C -0.02 -0.53 5.40 -27.88 -0.15 -0.68 16
11 C -0.41 -10.18 6.95 -35.44 -0.25 -10.42 16
12 C 0.06 1.67 9.00 -40.03 -0.36 1.31 16
13 C -0.46 -13.01 9.05 -38.12 -0.35 -13.36 16
14 H 0.06 1.79 7.85 -52.48 -0.41 1.38 16
15 C 0.07 1.95 5.50 -17.26 -0.09 1.85 16
16 N -0.82 -22.72 12.86 55.57 0.71 -22.00 16
17 Si 0.91 19.89 29.56 -169.99 -5.03 14.86 16
18 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16
19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16
20 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16
21 H 0.05 0.70 6.01 -51.93 -0.31 0.39 16
22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
23 H 0.05 0.85 6.36 -51.93 -0.33 0.52 16
24 H 0.11 2.40 5.97 -51.93 -0.31 2.09 16
25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16
27 H 0.04 0.65 6.60 -51.93 -0.34 0.30 16
28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
29 H 0.05 0.76 4.79 -51.92 -0.25 0.51 16
30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
33 H 0.07 1.10 8.06 -51.93 -0.42 0.68 16
34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.05 1.08 7.85 -51.93 -0.41 0.67 16
36 H 0.06 1.66 8.01 -52.49 -0.42 1.24 16
37 H 0.08 2.27 7.27 -52.49 -0.38 1.89 16
38 H 0.28 6.95 8.29 -40.82 -0.34 6.61 16
LS Contribution 294.24 15.07 4.43 4.43
Total: -1.00 -27.59 294.24 -8.53 -36.12
By element:
Atomic # 1 Polarization: 10.21 SS G_CDS: -6.40 Total: 3.81 kcal
Atomic # 6 Polarization: -25.81 SS G_CDS: -1.23 Total: -27.03 kcal
Atomic # 7 Polarization: -31.88 SS G_CDS: -0.30 Total: -32.19 kcal
Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -27.59 -8.53 -36.12 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687681471.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.126 kcal
(2) G-P(sol) polarization free energy of solvation -27.592 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.534 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.992 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds