Wall clock time and date at job start Mon Mar 30 2020 02:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47354 * 2 1 4 4 N 1.46895 * 109.47351 * 120.00229 * 2 1 3 5 5 C 1.47446 * 110.99794 * 302.88832 * 4 2 1 6 6 C 1.54316 * 107.23334 * 123.25457 * 5 4 2 7 7 C 1.55138 * 103.01929 * 22.28703 * 6 5 4 8 8 C 1.47844 * 111.00189 * 63.73000 * 4 2 1 9 9 H 1.09004 * 110.37005 * 332.57682 * 8 4 2 10 10 C 1.52997 * 110.37478 * 94.81026 * 8 4 2 11 11 C 1.50706 * 109.46913 * 294.63618 * 10 8 4 12 12 C 1.35040 * 119.99664 * 125.29618 * 11 10 8 13 13 C 1.40065 * 119.99709 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00191 * 359.97438 * 13 12 11 15 15 C 1.40305 * 120.00188 * 180.02562 * 13 12 11 16 16 N 1.30693 * 119.99715 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47139 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47199 * 119.99823 * 17 15 13 20 20 H 1.48503 * 109.47221 * 239.99808 * 17 15 13 21 21 H 1.09000 * 109.46997 * 294.56168 * 1 2 3 22 22 H 1.09005 * 109.47312 * 54.55448 * 1 2 3 23 23 H 1.08994 * 109.47362 * 174.55725 * 1 2 3 24 24 H 1.09007 * 109.46972 * 240.00335 * 2 1 3 25 25 H 1.08999 * 109.47355 * 183.18120 * 3 2 1 26 26 H 1.09004 * 109.46962 * 303.18469 * 3 2 1 27 27 H 1.08995 * 109.47219 * 63.17684 * 3 2 1 28 28 H 1.08994 * 109.89112 * 242.66334 * 5 4 2 29 29 H 1.09009 * 109.89096 * 3.68839 * 5 4 2 30 30 H 1.09006 * 110.70443 * 140.66304 * 6 5 4 31 31 H 1.08998 * 110.70691 * 263.72646 * 6 5 4 32 32 H 1.09001 * 110.98896 * 206.25455 * 7 6 5 33 33 H 1.09005 * 110.99373 * 82.43329 * 7 6 5 34 34 H 1.08998 * 109.47501 * 174.63788 * 10 8 4 35 35 H 1.09004 * 109.47003 * 54.63271 * 10 8 4 36 36 H 1.07999 * 119.99961 * 305.30191 * 11 10 8 37 37 H 1.08000 * 119.99889 * 0.02562 * 12 11 10 38 38 H 0.96996 * 119.99790 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.4911 -0.0652 2.4245 6 6 0.7512 -1.1629 3.2176 7 6 1.3866 -2.4716 2.6789 8 6 1.6204 -2.1160 1.1895 9 1 0.7021 -2.2485 0.6173 10 6 2.7402 -2.9793 0.6051 11 6 2.9380 -2.6296 -0.8474 12 6 4.1602 -2.2694 -1.2947 13 6 4.3440 -1.9439 -2.6446 14 1 3.5084 -1.9814 -3.3278 15 6 5.6139 -1.5702 -3.1095 16 7 6.6253 -1.5252 -2.2829 17 14 5.8589 -1.1354 -4.9096 18 1 4.5667 -1.2633 -5.6301 19 1 6.3510 0.2614 -5.0189 20 1 6.8540 -2.0592 -5.5110 21 1 -0.3633 0.4272 0.9347 22 1 -0.3634 0.5960 -0.8372 23 1 -0.3634 -1.0230 -0.0975 24 1 1.8933 -0.5138 -0.8901 25 1 3.1285 1.4430 -0.0570 26 1 1.6308 1.9726 -0.8601 27 1 1.7240 1.9396 0.9170 28 1 2.3118 0.3337 3.0207 29 1 0.7999 0.7360 2.1624 30 1 0.9357 -1.0566 4.2867 31 1 -0.3180 -1.1356 3.0078 32 1 0.6965 -3.3097 2.7766 33 1 2.3299 -2.6838 3.1823 34 1 2.4706 -4.0318 0.6919 35 1 3.6646 -2.7946 1.1524 36 1 2.1024 -2.6671 -1.5305 37 1 4.9959 -2.2323 -0.6116 38 1 7.5033 -1.2672 -2.6044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687681471.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:30 Heat of formation + Delta-G solvation = -21.736532 kcal Electronic energy + Delta-G solvation = -15939.899989 eV Core-core repulsion = 13587.844268 eV Total energy + Delta-G solvation = -2352.055722 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56428 -36.29062 -35.24039 -34.09043 -31.16486 -29.80897 -28.15998 -27.68320 -25.08315 -22.90305 -21.46700 -20.20361 -19.92434 -18.79536 -17.65757 -16.68358 -16.14447 -15.27744 -15.15632 -14.65402 -14.56088 -14.28915 -13.96411 -13.50303 -13.10158 -13.04122 -12.96334 -12.78858 -12.60301 -12.27849 -12.13137 -11.97873 -11.93855 -11.79910 -11.55880 -11.43322 -11.33240 -11.22174 -10.97516 -9.53728 -8.89058 -8.62704 -6.21193 1.25150 1.35431 1.51298 2.03582 2.23085 3.21719 3.45645 3.85770 3.89236 4.14426 4.18084 4.29677 4.41719 4.55722 4.66711 4.69503 4.74781 4.84209 4.89241 4.91121 4.95367 5.04017 5.06958 5.17480 5.19150 5.23003 5.27582 5.37214 5.38934 5.50448 5.53897 5.58200 6.02080 6.41413 6.48696 6.53302 6.69895 7.15028 7.29850 8.43780 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.034354 B = 0.007270 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.857066 B = 3850.623863 C = 4212.704040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.066 3.934 3 C -0.133 4.133 4 N -0.529 5.529 5 C 0.033 3.967 6 C -0.130 4.130 7 C -0.124 4.124 8 C 0.081 3.919 9 H 0.046 0.954 10 C -0.026 4.026 11 C -0.379 4.379 12 C 0.031 3.969 13 C -0.498 4.498 14 H 0.059 0.941 15 C 0.026 3.974 16 N -0.861 5.861 17 Si 0.984 3.016 18 H -0.260 1.260 19 H -0.264 1.264 20 H -0.263 1.263 21 H 0.070 0.930 22 H 0.064 0.936 23 H 0.047 0.953 24 H 0.063 0.937 25 H 0.034 0.966 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.029 0.971 36 H 0.056 0.944 37 H 0.049 0.951 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.174 3.811 6.946 12.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.042 4.042 3 C -0.190 4.190 4 N -0.254 5.254 5 C -0.094 4.094 6 C -0.168 4.168 7 C -0.162 4.162 8 C -0.027 4.027 9 H 0.064 0.936 10 C -0.064 4.064 11 C -0.401 4.401 12 C 0.011 3.989 13 C -0.529 4.529 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.489 5.489 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.188 1.188 20 H -0.187 1.187 21 H 0.089 0.911 22 H 0.083 0.917 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.366 3.912 6.962 12.309 hybrid contribution -0.255 0.014 -0.934 0.968 sum -9.621 3.926 6.028 12.013 Atomic orbital electron populations 1.22396 0.96562 1.01512 1.02668 1.21804 0.93133 0.95201 0.94082 1.21747 1.00352 0.94994 1.01919 1.63483 1.58159 1.02024 1.01704 1.22932 0.97910 0.97430 0.91166 1.22726 0.99568 0.93911 1.00612 1.22756 1.01048 0.98284 0.94080 1.22552 0.96023 0.88212 0.95884 0.93569 1.19953 0.96639 0.96096 0.93679 1.21976 0.95638 1.27128 0.95361 1.19786 0.93892 0.91026 0.94207 1.19729 0.94842 1.42208 0.96127 0.92292 1.26956 0.95026 0.92078 1.04503 1.69654 1.01891 1.38498 1.38879 0.85145 0.79200 0.78838 0.76370 1.18411 1.18815 1.18746 0.91114 0.91706 0.93415 0.91861 0.94702 0.91750 0.91462 0.91781 0.91427 0.89446 0.90745 0.89816 0.91556 0.93924 0.95218 0.92528 0.93267 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.93 8.62 71.98 0.62 -4.31 16 2 C 0.07 2.39 2.77 44.92 0.12 2.52 16 3 C -0.13 -4.33 9.16 71.98 0.66 -3.67 16 4 N -0.53 -19.11 4.72 -835.63 -3.95 -23.06 16 5 C 0.03 0.91 5.48 86.65 0.47 1.39 16 6 C -0.13 -2.97 6.94 31.77 0.22 -2.75 16 7 C -0.12 -3.40 6.50 31.98 0.21 -3.19 16 8 C 0.08 2.90 2.34 45.38 0.11 3.00 16 9 H 0.05 1.66 5.85 -2.38 -0.01 1.65 16 10 C -0.03 -1.13 5.40 29.85 0.16 -0.97 16 11 C -0.38 -19.65 6.95 24.95 0.17 -19.48 16 12 C 0.03 1.80 9.00 21.98 0.20 2.00 16 13 C -0.50 -29.20 9.05 23.22 0.21 -28.99 16 14 H 0.06 3.41 7.85 -2.91 -0.02 3.39 16 15 C 0.03 1.43 5.50 85.37 0.47 1.90 16 16 N -0.86 -48.97 12.86 21.89 0.28 -48.69 16 17 Si 0.98 41.26 29.56 68.60 2.03 43.28 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H 0.07 1.72 6.01 -2.39 -0.01 1.71 16 22 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.05 1.41 6.36 -2.39 -0.02 1.40 16 24 H 0.06 2.86 5.97 -2.38 -0.01 2.85 16 25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 27 H 0.07 1.85 6.60 -2.39 -0.02 1.84 16 28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.07 1.68 4.79 -2.38 -0.01 1.66 16 30 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16 34 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.38 7.85 -2.39 -0.02 1.36 16 36 H 0.06 3.01 8.01 -2.91 -0.02 2.99 16 37 H 0.05 3.11 7.27 -2.91 -0.02 3.09 16 38 H 0.29 14.66 8.29 -92.71 -0.77 13.89 16 Total: -1.00 -62.39 294.24 2.99 -59.40 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 1.01 Total: 21.60 kcal Atomic # 6 Polarization: -56.17 SS G_CDS: 3.63 Total: -52.55 kcal Atomic # 7 Polarization: -68.08 SS G_CDS: -3.67 Total: -71.74 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Total: -62.39 2.99 -59.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681471.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.663 kcal (2) G-P(sol) polarization free energy of solvation -62.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds