Wall clock time and date at job start Mon Mar 30 2020 02:44:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53002 * 109.47354 * 2 1
4 4 N 1.46895 * 109.47351 * 120.00229 * 2 1 3
5 5 C 1.47446 * 110.99794 * 302.88832 * 4 2 1
6 6 C 1.54316 * 107.23334 * 123.25457 * 5 4 2
7 7 C 1.55138 * 103.01929 * 22.28703 * 6 5 4
8 8 C 1.47844 * 111.00189 * 63.73000 * 4 2 1
9 9 H 1.09004 * 110.37005 * 332.57682 * 8 4 2
10 10 C 1.52997 * 110.37478 * 94.81026 * 8 4 2
11 11 C 1.50706 * 109.46913 * 294.63618 * 10 8 4
12 12 C 1.35040 * 119.99664 * 125.29618 * 11 10 8
13 13 C 1.40065 * 119.99709 * 180.02562 * 12 11 10
14 14 H 1.08004 * 120.00191 * 359.97438 * 13 12 11
15 15 C 1.40305 * 120.00188 * 180.02562 * 13 12 11
16 16 N 1.30693 * 119.99715 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 120.00405 * 180.02562 * 15 13 12
18 18 H 1.48501 * 109.47139 * 359.97438 * 17 15 13
19 19 H 1.48497 * 109.47199 * 119.99823 * 17 15 13
20 20 H 1.48503 * 109.47221 * 239.99808 * 17 15 13
21 21 H 1.09000 * 109.46997 * 294.56168 * 1 2 3
22 22 H 1.09005 * 109.47312 * 54.55448 * 1 2 3
23 23 H 1.08994 * 109.47362 * 174.55725 * 1 2 3
24 24 H 1.09007 * 109.46972 * 240.00335 * 2 1 3
25 25 H 1.08999 * 109.47355 * 183.18120 * 3 2 1
26 26 H 1.09004 * 109.46962 * 303.18469 * 3 2 1
27 27 H 1.08995 * 109.47219 * 63.17684 * 3 2 1
28 28 H 1.08994 * 109.89112 * 242.66334 * 5 4 2
29 29 H 1.09009 * 109.89096 * 3.68839 * 5 4 2
30 30 H 1.09006 * 110.70443 * 140.66304 * 6 5 4
31 31 H 1.08998 * 110.70691 * 263.72646 * 6 5 4
32 32 H 1.09001 * 110.98896 * 206.25455 * 7 6 5
33 33 H 1.09005 * 110.99373 * 82.43329 * 7 6 5
34 34 H 1.08998 * 109.47501 * 174.63788 * 10 8 4
35 35 H 1.09004 * 109.47003 * 54.63271 * 10 8 4
36 36 H 1.07999 * 119.99961 * 305.30191 * 11 10 8
37 37 H 1.08000 * 119.99889 * 0.02562 * 12 11 10
38 38 H 0.96996 * 119.99790 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 1.4911 -0.0652 2.4245
6 6 0.7512 -1.1629 3.2176
7 6 1.3866 -2.4716 2.6789
8 6 1.6204 -2.1160 1.1895
9 1 0.7021 -2.2485 0.6173
10 6 2.7402 -2.9793 0.6051
11 6 2.9380 -2.6296 -0.8474
12 6 4.1602 -2.2694 -1.2947
13 6 4.3440 -1.9439 -2.6446
14 1 3.5084 -1.9814 -3.3278
15 6 5.6139 -1.5702 -3.1095
16 7 6.6253 -1.5252 -2.2829
17 14 5.8589 -1.1354 -4.9096
18 1 4.5667 -1.2633 -5.6301
19 1 6.3510 0.2614 -5.0189
20 1 6.8540 -2.0592 -5.5110
21 1 -0.3633 0.4272 0.9347
22 1 -0.3634 0.5960 -0.8372
23 1 -0.3634 -1.0230 -0.0975
24 1 1.8933 -0.5138 -0.8901
25 1 3.1285 1.4430 -0.0570
26 1 1.6308 1.9726 -0.8601
27 1 1.7240 1.9396 0.9170
28 1 2.3118 0.3337 3.0207
29 1 0.7999 0.7360 2.1624
30 1 0.9357 -1.0566 4.2867
31 1 -0.3180 -1.1356 3.0078
32 1 0.6965 -3.3097 2.7766
33 1 2.3299 -2.6838 3.1823
34 1 2.4706 -4.0318 0.6919
35 1 3.6646 -2.7946 1.1524
36 1 2.1024 -2.6671 -1.5305
37 1 4.9959 -2.2323 -0.6116
38 1 7.5033 -1.2672 -2.6044
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687681471.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:44:30
Heat of formation + Delta-G solvation = -21.736532 kcal
Electronic energy + Delta-G solvation = -15939.899989 eV
Core-core repulsion = 13587.844268 eV
Total energy + Delta-G solvation = -2352.055722 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.56428 -36.29062 -35.24039 -34.09043 -31.16486 -29.80897 -28.15998 -27.68320
-25.08315 -22.90305 -21.46700 -20.20361 -19.92434 -18.79536 -17.65757 -16.68358
-16.14447 -15.27744 -15.15632 -14.65402 -14.56088 -14.28915 -13.96411 -13.50303
-13.10158 -13.04122 -12.96334 -12.78858 -12.60301 -12.27849 -12.13137 -11.97873
-11.93855 -11.79910 -11.55880 -11.43322 -11.33240 -11.22174 -10.97516 -9.53728
-8.89058 -8.62704 -6.21193 1.25150 1.35431 1.51298 2.03582 2.23085
3.21719 3.45645 3.85770 3.89236 4.14426 4.18084 4.29677 4.41719
4.55722 4.66711 4.69503 4.74781 4.84209 4.89241 4.91121 4.95367
5.04017 5.06958 5.17480 5.19150 5.23003 5.27582 5.37214 5.38934
5.50448 5.53897 5.58200 6.02080 6.41413 6.48696 6.53302 6.69895
7.15028 7.29850 8.43780
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.034354 B = 0.007270 C = 0.006645
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 814.857066 B = 3850.623863 C = 4212.704040
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.066 3.934
3 C -0.133 4.133
4 N -0.529 5.529
5 C 0.033 3.967
6 C -0.130 4.130
7 C -0.124 4.124
8 C 0.081 3.919
9 H 0.046 0.954
10 C -0.026 4.026
11 C -0.379 4.379
12 C 0.031 3.969
13 C -0.498 4.498
14 H 0.059 0.941
15 C 0.026 3.974
16 N -0.861 5.861
17 Si 0.984 3.016
18 H -0.260 1.260
19 H -0.264 1.264
20 H -0.263 1.263
21 H 0.070 0.930
22 H 0.064 0.936
23 H 0.047 0.953
24 H 0.063 0.937
25 H 0.034 0.966
26 H 0.064 0.936
27 H 0.066 0.934
28 H 0.064 0.936
29 H 0.068 0.932
30 H 0.087 0.913
31 H 0.074 0.926
32 H 0.083 0.917
33 H 0.066 0.934
34 H 0.042 0.958
35 H 0.029 0.971
36 H 0.056 0.944
37 H 0.049 0.951
38 H 0.287 0.713
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.174 3.811 6.946 12.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C -0.042 4.042
3 C -0.190 4.190
4 N -0.254 5.254
5 C -0.094 4.094
6 C -0.168 4.168
7 C -0.162 4.162
8 C -0.027 4.027
9 H 0.064 0.936
10 C -0.064 4.064
11 C -0.401 4.401
12 C 0.011 3.989
13 C -0.529 4.529
14 H 0.077 0.923
15 C -0.186 4.186
16 N -0.489 5.489
17 Si 0.804 3.196
18 H -0.184 1.184
19 H -0.188 1.188
20 H -0.187 1.187
21 H 0.089 0.911
22 H 0.083 0.917
23 H 0.066 0.934
24 H 0.081 0.919
25 H 0.053 0.947
26 H 0.082 0.918
27 H 0.085 0.915
28 H 0.082 0.918
29 H 0.086 0.914
30 H 0.106 0.894
31 H 0.093 0.907
32 H 0.102 0.898
33 H 0.084 0.916
34 H 0.061 0.939
35 H 0.048 0.952
36 H 0.075 0.925
37 H 0.067 0.933
38 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -9.366 3.912 6.962 12.309
hybrid contribution -0.255 0.014 -0.934 0.968
sum -9.621 3.926 6.028 12.013
Atomic orbital electron populations
1.22396 0.96562 1.01512 1.02668 1.21804 0.93133 0.95201 0.94082
1.21747 1.00352 0.94994 1.01919 1.63483 1.58159 1.02024 1.01704
1.22932 0.97910 0.97430 0.91166 1.22726 0.99568 0.93911 1.00612
1.22756 1.01048 0.98284 0.94080 1.22552 0.96023 0.88212 0.95884
0.93569 1.19953 0.96639 0.96096 0.93679 1.21976 0.95638 1.27128
0.95361 1.19786 0.93892 0.91026 0.94207 1.19729 0.94842 1.42208
0.96127 0.92292 1.26956 0.95026 0.92078 1.04503 1.69654 1.01891
1.38498 1.38879 0.85145 0.79200 0.78838 0.76370 1.18411 1.18815
1.18746 0.91114 0.91706 0.93415 0.91861 0.94702 0.91750 0.91462
0.91781 0.91427 0.89446 0.90745 0.89816 0.91556 0.93924 0.95218
0.92528 0.93267 0.90295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.93 8.62 71.98 0.62 -4.31 16
2 C 0.07 2.39 2.77 44.92 0.12 2.52 16
3 C -0.13 -4.33 9.16 71.98 0.66 -3.67 16
4 N -0.53 -19.11 4.72 -835.63 -3.95 -23.06 16
5 C 0.03 0.91 5.48 86.65 0.47 1.39 16
6 C -0.13 -2.97 6.94 31.77 0.22 -2.75 16
7 C -0.12 -3.40 6.50 31.98 0.21 -3.19 16
8 C 0.08 2.90 2.34 45.38 0.11 3.00 16
9 H 0.05 1.66 5.85 -2.38 -0.01 1.65 16
10 C -0.03 -1.13 5.40 29.85 0.16 -0.97 16
11 C -0.38 -19.65 6.95 24.95 0.17 -19.48 16
12 C 0.03 1.80 9.00 21.98 0.20 2.00 16
13 C -0.50 -29.20 9.05 23.22 0.21 -28.99 16
14 H 0.06 3.41 7.85 -2.91 -0.02 3.39 16
15 C 0.03 1.43 5.50 85.37 0.47 1.90 16
16 N -0.86 -48.97 12.86 21.89 0.28 -48.69 16
17 Si 0.98 41.26 29.56 68.60 2.03 43.28 16
18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16
19 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16
20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16
21 H 0.07 1.72 6.01 -2.39 -0.01 1.71 16
22 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16
23 H 0.05 1.41 6.36 -2.39 -0.02 1.40 16
24 H 0.06 2.86 5.97 -2.38 -0.01 2.85 16
25 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16
26 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16
27 H 0.07 1.85 6.60 -2.39 -0.02 1.84 16
28 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16
29 H 0.07 1.68 4.79 -2.38 -0.01 1.66 16
30 H 0.09 1.65 8.14 -2.38 -0.02 1.64 16
31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16
32 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16
33 H 0.07 1.90 8.06 -2.38 -0.02 1.88 16
34 H 0.04 1.72 8.14 -2.39 -0.02 1.71 16
35 H 0.03 1.38 7.85 -2.39 -0.02 1.36 16
36 H 0.06 3.01 8.01 -2.91 -0.02 2.99 16
37 H 0.05 3.11 7.27 -2.91 -0.02 3.09 16
38 H 0.29 14.66 8.29 -92.71 -0.77 13.89 16
Total: -1.00 -62.39 294.24 2.99 -59.40
By element:
Atomic # 1 Polarization: 20.60 SS G_CDS: 1.01 Total: 21.60 kcal
Atomic # 6 Polarization: -56.17 SS G_CDS: 3.63 Total: -52.55 kcal
Atomic # 7 Polarization: -68.08 SS G_CDS: -3.67 Total: -71.74 kcal
Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal
Total: -62.39 2.99 -59.40 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687681471.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.663 kcal
(2) G-P(sol) polarization free energy of solvation -62.394 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.731 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.994 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.737 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds