Wall clock time and date at job start Mon Mar 30 2020 02:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47133 * 2 1 4 4 N 1.46900 * 109.47541 * 120.00262 * 2 1 3 5 5 C 1.46850 * 110.99740 * 298.95512 * 4 2 1 6 6 C 1.53037 * 109.52028 * 185.83738 * 5 4 2 7 7 C 1.53126 * 109.27880 * 300.82273 * 6 5 4 8 8 C 1.53114 * 109.16239 * 57.65311 * 7 6 5 9 9 C 1.46929 * 110.98461 * 63.18298 * 4 2 1 10 10 H 1.09007 * 109.45009 * 294.16157 * 9 4 2 11 11 C 1.50693 * 109.51818 * 54.15720 * 9 4 2 12 12 C 1.35041 * 120.00290 * 245.03160 * 11 9 4 13 13 C 1.40068 * 120.00051 * 180.02562 * 12 11 9 14 14 H 1.07999 * 120.00166 * 359.97438 * 13 12 11 15 15 C 1.40310 * 119.99523 * 180.02562 * 13 12 11 16 16 N 1.30692 * 119.99593 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00419 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47382 * 90.00165 * 17 15 13 19 19 H 1.48503 * 109.47387 * 210.00102 * 17 15 13 20 20 H 1.48505 * 109.47011 * 330.00181 * 17 15 13 21 21 H 1.08997 * 109.47432 * 179.97438 * 1 2 3 22 22 H 1.09010 * 109.46927 * 299.99679 * 1 2 3 23 23 H 1.09001 * 109.47445 * 59.99410 * 1 2 3 24 24 H 1.09005 * 109.46990 * 240.00794 * 2 1 3 25 25 H 1.09000 * 109.47394 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47436 * 300.00595 * 3 2 1 27 27 H 1.09010 * 109.46952 * 60.00337 * 3 2 1 28 28 H 1.08997 * 109.46198 * 65.82029 * 5 4 2 29 29 H 1.08995 * 109.45893 * 305.84904 * 5 4 2 30 30 H 1.08997 * 109.50150 * 180.88044 * 6 5 4 31 31 H 1.09006 * 109.50306 * 60.75855 * 6 5 4 32 32 H 1.09006 * 109.51941 * 297.74603 * 7 6 5 33 33 H 1.08997 * 109.57191 * 177.59586 * 7 6 5 34 34 H 1.09002 * 109.50377 * 62.28979 * 8 7 6 35 35 H 1.09003 * 109.50316 * 182.36975 * 8 7 6 36 36 H 1.08001 * 120.00168 * 65.03471 * 11 9 4 37 37 H 1.08001 * 119.99541 * 0.02562 * 12 11 9 38 38 H 0.97008 * 120.00069 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.5694 -0.0124 2.4205 6 6 2.2149 -0.6723 3.6411 7 6 1.8212 -2.1515 3.6835 8 6 2.2584 -2.8255 2.3800 9 6 1.6117 -2.1040 1.1955 10 1 0.5267 -2.1684 1.2794 11 6 2.0550 -2.7527 -0.0904 12 6 1.1360 -3.2038 -0.9711 13 6 1.5481 -3.8072 -2.1660 14 1 2.6009 -3.9114 -2.3833 15 6 0.5931 -4.2754 -3.0812 16 7 0.9777 -4.8380 -4.1964 17 14 -1.2277 -4.0945 -2.7057 18 1 -1.7166 -2.7975 -3.2386 19 1 -1.9776 -5.2061 -3.3440 20 1 -1.4366 -4.1362 -1.2360 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.8933 -0.5137 -0.8901 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9564 -0.8899 27 1 1.6766 1.9563 0.8901 28 1 0.4848 -0.0866 2.4986 29 1 1.8595 1.0375 2.3794 30 1 1.8684 -0.1773 4.5482 31 1 3.2993 -0.5863 3.5704 32 1 0.7401 -2.2376 3.7933 33 1 2.3128 -2.6361 4.5270 34 1 3.3434 -2.7734 2.2895 35 1 1.9435 -3.8690 2.3865 36 1 3.1078 -2.8570 -0.3077 37 1 0.0832 -3.0992 -0.7539 38 1 0.3175 -5.1620 -4.8290 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687681483.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:51 Heat of formation + Delta-G solvation = -26.347179 kcal Electronic energy + Delta-G solvation = -16093.792696 eV Core-core repulsion = 13741.537042 eV Total energy + Delta-G solvation = -2352.255655 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.46418 -36.14204 -35.88394 -34.10120 -31.34159 -30.95672 -28.06152 -27.09468 -24.98129 -23.35633 -21.47710 -20.41916 -19.91079 -19.23005 -17.03581 -16.66724 -15.92176 -15.40535 -15.24307 -15.05066 -14.60350 -14.44488 -14.20025 -13.83793 -13.46910 -13.21042 -13.15820 -12.74277 -12.53308 -12.30519 -12.14570 -12.02110 -11.90153 -11.70309 -11.57925 -11.49755 -11.26170 -11.00241 -10.85018 -9.85371 -8.92759 -8.81795 -6.36009 1.15853 1.25549 1.39573 1.76520 2.10028 3.13180 3.39867 4.03491 4.05938 4.15216 4.17797 4.34140 4.44692 4.50867 4.56613 4.62742 4.70078 4.79373 4.82099 4.87871 4.96572 5.00781 5.09769 5.12631 5.18338 5.19812 5.29567 5.32257 5.44179 5.49275 5.51761 5.66604 5.86882 6.23873 6.36480 6.54596 6.59654 6.89829 7.10762 8.29282 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030119 B = 0.008375 C = 0.007581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.430990 B = 3342.422608 C = 3692.716405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.075 3.925 3 C -0.134 4.134 4 N -0.534 5.534 5 C 0.045 3.955 6 C -0.110 4.110 7 C -0.117 4.117 8 C -0.105 4.105 9 C 0.160 3.840 10 H 0.014 0.986 11 C -0.361 4.361 12 C 0.005 3.995 13 C -0.482 4.482 14 H 0.033 0.967 15 C 0.032 3.968 16 N -0.867 5.867 17 Si 0.966 3.034 18 H -0.253 1.253 19 H -0.262 1.262 20 H -0.250 1.250 21 H 0.034 0.966 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 9.713 12.405 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.033 4.033 3 C -0.191 4.191 4 N -0.259 5.259 5 C -0.082 4.082 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.143 4.143 9 C 0.053 3.947 10 H 0.032 0.968 11 C -0.384 4.384 12 C -0.016 4.016 13 C -0.513 4.513 14 H 0.052 0.948 15 C -0.180 4.180 16 N -0.495 5.495 17 Si 0.785 3.215 18 H -0.177 1.177 19 H -0.186 1.186 20 H -0.174 1.174 21 H 0.053 0.947 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -3.468 9.596 12.143 15.860 hybrid contribution -1.056 -0.565 -0.716 1.395 sum -4.523 9.031 11.426 15.251 Atomic orbital electron populations 1.22372 0.97953 1.00913 1.02322 1.21557 0.92624 0.95369 0.93757 1.21812 1.01193 0.93892 1.02203 1.62264 1.59967 1.01905 1.01770 1.22263 0.97052 0.98912 0.90007 1.21566 1.00972 0.95058 0.97175 1.21599 1.00695 0.96331 0.96786 1.21560 1.00258 0.98332 0.94129 1.20002 0.94299 0.86981 0.93448 0.96828 1.21929 0.95496 1.20853 1.00094 1.19980 0.95609 0.93319 0.92693 1.19495 0.94169 1.35015 1.02639 0.94846 1.27133 1.06303 0.91203 0.93388 1.69646 1.39167 1.31524 1.09180 0.85432 0.75907 0.79873 0.80250 1.17699 1.18615 1.17387 0.94675 0.91389 0.91947 0.92516 0.92726 0.91780 0.91266 0.95473 0.89568 0.89567 0.91873 0.92519 0.90632 0.92867 0.92914 0.92744 0.90746 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.69 8.51 71.98 0.61 -5.08 16 2 C 0.08 2.62 2.68 44.91 0.12 2.74 16 3 C -0.13 -3.61 8.94 71.98 0.64 -2.97 16 4 N -0.53 -18.69 4.49 -850.20 -3.81 -22.51 16 5 C 0.05 1.22 4.66 86.33 0.40 1.63 16 6 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16 7 C -0.12 -3.05 6.00 30.67 0.18 -2.87 16 8 C -0.10 -3.62 5.35 30.64 0.16 -3.46 16 9 C 0.16 6.34 1.73 44.17 0.08 6.42 16 10 H 0.01 0.57 6.39 -2.38 -0.02 0.55 16 11 C -0.36 -17.74 7.01 24.95 0.17 -17.56 16 12 C 0.00 0.25 8.17 21.98 0.18 0.43 16 13 C -0.48 -28.45 9.64 23.22 0.22 -28.23 16 14 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16 15 C 0.03 1.75 5.52 85.37 0.47 2.22 16 16 N -0.87 -49.42 13.92 21.89 0.30 -49.11 16 17 Si 0.97 41.19 27.47 68.60 1.88 43.08 16 18 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 20 H -0.25 -10.36 6.36 99.48 0.63 -9.73 16 21 H 0.03 1.28 5.81 -2.39 -0.01 1.27 16 22 H 0.07 1.86 6.56 -2.38 -0.02 1.85 16 23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 24 H 0.06 2.45 6.76 -2.38 -0.02 2.43 16 25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.58 6.26 -2.38 -0.01 1.56 16 28 H 0.03 0.74 6.65 -2.39 -0.02 0.72 16 29 H 0.09 2.04 5.98 -2.39 -0.01 2.03 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 2.96 8.05 -2.91 -0.02 2.94 16 37 H 0.07 3.67 4.61 -2.91 -0.01 3.66 16 38 H 0.29 14.81 8.29 -92.70 -0.77 14.04 16 Total: -1.00 -61.28 287.45 2.75 -58.53 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.94 Total: 19.17 kcal Atomic # 6 Polarization: -52.60 SS G_CDS: 3.44 Total: -49.16 kcal Atomic # 7 Polarization: -68.11 SS G_CDS: -3.51 Total: -71.62 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.88 Total: 43.08 kcal Total: -61.28 2.75 -58.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681483.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.186 kcal (2) G-P(sol) polarization free energy of solvation -61.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds