Wall clock time and date at job start Mon Mar 30 2020 02:43:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52998 * 109.47133 * 2 1
4 4 N 1.46900 * 109.47541 * 120.00262 * 2 1 3
5 5 C 1.46850 * 110.99740 * 298.95512 * 4 2 1
6 6 C 1.53037 * 109.52028 * 185.83738 * 5 4 2
7 7 C 1.53126 * 109.27880 * 300.82273 * 6 5 4
8 8 C 1.53114 * 109.16239 * 57.65311 * 7 6 5
9 9 C 1.46929 * 110.98461 * 63.18298 * 4 2 1
10 10 H 1.09007 * 109.45009 * 294.16157 * 9 4 2
11 11 C 1.50693 * 109.51818 * 54.15720 * 9 4 2
12 12 C 1.35041 * 120.00290 * 245.03160 * 11 9 4
13 13 C 1.40068 * 120.00051 * 180.02562 * 12 11 9
14 14 H 1.07999 * 120.00166 * 359.97438 * 13 12 11
15 15 C 1.40310 * 119.99523 * 180.02562 * 13 12 11
16 16 N 1.30692 * 119.99593 * 179.97438 * 15 13 12
17 17 Si 1.86792 * 120.00419 * 359.97438 * 15 13 12
18 18 H 1.48499 * 109.47382 * 90.00165 * 17 15 13
19 19 H 1.48503 * 109.47387 * 210.00102 * 17 15 13
20 20 H 1.48505 * 109.47011 * 330.00181 * 17 15 13
21 21 H 1.08997 * 109.47432 * 179.97438 * 1 2 3
22 22 H 1.09010 * 109.46927 * 299.99679 * 1 2 3
23 23 H 1.09001 * 109.47445 * 59.99410 * 1 2 3
24 24 H 1.09005 * 109.46990 * 240.00794 * 2 1 3
25 25 H 1.09000 * 109.47394 * 180.02562 * 3 2 1
26 26 H 1.09001 * 109.47436 * 300.00595 * 3 2 1
27 27 H 1.09010 * 109.46952 * 60.00337 * 3 2 1
28 28 H 1.08997 * 109.46198 * 65.82029 * 5 4 2
29 29 H 1.08995 * 109.45893 * 305.84904 * 5 4 2
30 30 H 1.08997 * 109.50150 * 180.88044 * 6 5 4
31 31 H 1.09006 * 109.50306 * 60.75855 * 6 5 4
32 32 H 1.09006 * 109.51941 * 297.74603 * 7 6 5
33 33 H 1.08997 * 109.57191 * 177.59586 * 7 6 5
34 34 H 1.09002 * 109.50377 * 62.28979 * 8 7 6
35 35 H 1.09003 * 109.50316 * 182.36975 * 8 7 6
36 36 H 1.08001 * 120.00168 * 65.03471 * 11 9 4
37 37 H 1.08001 * 119.99541 * 0.02562 * 12 11 9
38 38 H 0.97008 * 120.00069 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0197 -0.6925 1.1994
5 6 1.5694 -0.0124 2.4205
6 6 2.2149 -0.6723 3.6411
7 6 1.8212 -2.1515 3.6835
8 6 2.2584 -2.8255 2.3800
9 6 1.6117 -2.1040 1.1955
10 1 0.5267 -2.1684 1.2794
11 6 2.0550 -2.7527 -0.0904
12 6 1.1360 -3.2038 -0.9711
13 6 1.5481 -3.8072 -2.1660
14 1 2.6009 -3.9114 -2.3833
15 6 0.5931 -4.2754 -3.0812
16 7 0.9777 -4.8380 -4.1964
17 14 -1.2277 -4.0945 -2.7057
18 1 -1.7166 -2.7975 -3.2386
19 1 -1.9776 -5.2061 -3.3440
20 1 -1.4366 -4.1362 -1.2360
21 1 -0.3634 -1.0276 -0.0005
22 1 -0.3633 0.5138 0.8901
23 1 -0.3634 0.5139 -0.8899
24 1 1.8933 -0.5137 -0.8901
25 1 3.1300 1.4425 -0.0005
26 1 1.6766 1.9564 -0.8899
27 1 1.6766 1.9563 0.8901
28 1 0.4848 -0.0866 2.4986
29 1 1.8595 1.0375 2.3794
30 1 1.8684 -0.1773 4.5482
31 1 3.2993 -0.5863 3.5704
32 1 0.7401 -2.2376 3.7933
33 1 2.3128 -2.6361 4.5270
34 1 3.3434 -2.7734 2.2895
35 1 1.9435 -3.8690 2.3865
36 1 3.1078 -2.8570 -0.3077
37 1 0.0832 -3.0992 -0.7539
38 1 0.3175 -5.1620 -4.8290
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000687681483.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:43:51
Heat of formation + Delta-G solvation = -26.347179 kcal
Electronic energy + Delta-G solvation = -16093.792696 eV
Core-core repulsion = 13741.537042 eV
Total energy + Delta-G solvation = -2352.255655 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.46418 -36.14204 -35.88394 -34.10120 -31.34159 -30.95672 -28.06152 -27.09468
-24.98129 -23.35633 -21.47710 -20.41916 -19.91079 -19.23005 -17.03581 -16.66724
-15.92176 -15.40535 -15.24307 -15.05066 -14.60350 -14.44488 -14.20025 -13.83793
-13.46910 -13.21042 -13.15820 -12.74277 -12.53308 -12.30519 -12.14570 -12.02110
-11.90153 -11.70309 -11.57925 -11.49755 -11.26170 -11.00241 -10.85018 -9.85371
-8.92759 -8.81795 -6.36009 1.15853 1.25549 1.39573 1.76520 2.10028
3.13180 3.39867 4.03491 4.05938 4.15216 4.17797 4.34140 4.44692
4.50867 4.56613 4.62742 4.70078 4.79373 4.82099 4.87871 4.96572
5.00781 5.09769 5.12631 5.18338 5.19812 5.29567 5.32257 5.44179
5.49275 5.51761 5.66604 5.86882 6.23873 6.36480 6.54596 6.59654
6.89829 7.10762 8.29282
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.030119 B = 0.008375 C = 0.007581
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 929.430990 B = 3342.422608 C = 3692.716405
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.075 3.925
3 C -0.134 4.134
4 N -0.534 5.534
5 C 0.045 3.955
6 C -0.110 4.110
7 C -0.117 4.117
8 C -0.105 4.105
9 C 0.160 3.840
10 H 0.014 0.986
11 C -0.361 4.361
12 C 0.005 3.995
13 C -0.482 4.482
14 H 0.033 0.967
15 C 0.032 3.968
16 N -0.867 5.867
17 Si 0.966 3.034
18 H -0.253 1.253
19 H -0.262 1.262
20 H -0.250 1.250
21 H 0.034 0.966
22 H 0.067 0.933
23 H 0.061 0.939
24 H 0.057 0.943
25 H 0.054 0.946
26 H 0.063 0.937
27 H 0.068 0.932
28 H 0.027 0.973
29 H 0.086 0.914
30 H 0.086 0.914
31 H 0.062 0.938
32 H 0.056 0.944
33 H 0.075 0.925
34 H 0.053 0.947
35 H 0.052 0.948
36 H 0.054 0.946
37 H 0.075 0.925
38 H 0.291 0.709
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.965 9.713 12.405 16.246
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.033 4.033
3 C -0.191 4.191
4 N -0.259 5.259
5 C -0.082 4.082
6 C -0.148 4.148
7 C -0.154 4.154
8 C -0.143 4.143
9 C 0.053 3.947
10 H 0.032 0.968
11 C -0.384 4.384
12 C -0.016 4.016
13 C -0.513 4.513
14 H 0.052 0.948
15 C -0.180 4.180
16 N -0.495 5.495
17 Si 0.785 3.215
18 H -0.177 1.177
19 H -0.186 1.186
20 H -0.174 1.174
21 H 0.053 0.947
22 H 0.086 0.914
23 H 0.081 0.919
24 H 0.075 0.925
25 H 0.073 0.927
26 H 0.082 0.918
27 H 0.087 0.913
28 H 0.045 0.955
29 H 0.104 0.896
30 H 0.104 0.896
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.094 0.906
34 H 0.071 0.929
35 H 0.071 0.929
36 H 0.073 0.927
37 H 0.093 0.907
38 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -3.468 9.596 12.143 15.860
hybrid contribution -1.056 -0.565 -0.716 1.395
sum -4.523 9.031 11.426 15.251
Atomic orbital electron populations
1.22372 0.97953 1.00913 1.02322 1.21557 0.92624 0.95369 0.93757
1.21812 1.01193 0.93892 1.02203 1.62264 1.59967 1.01905 1.01770
1.22263 0.97052 0.98912 0.90007 1.21566 1.00972 0.95058 0.97175
1.21599 1.00695 0.96331 0.96786 1.21560 1.00258 0.98332 0.94129
1.20002 0.94299 0.86981 0.93448 0.96828 1.21929 0.95496 1.20853
1.00094 1.19980 0.95609 0.93319 0.92693 1.19495 0.94169 1.35015
1.02639 0.94846 1.27133 1.06303 0.91203 0.93388 1.69646 1.39167
1.31524 1.09180 0.85432 0.75907 0.79873 0.80250 1.17699 1.18615
1.17387 0.94675 0.91389 0.91947 0.92516 0.92726 0.91780 0.91266
0.95473 0.89568 0.89567 0.91873 0.92519 0.90632 0.92867 0.92914
0.92744 0.90746 0.89825
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.69 8.51 71.98 0.61 -5.08 16
2 C 0.08 2.62 2.68 44.91 0.12 2.74 16
3 C -0.13 -3.61 8.94 71.98 0.64 -2.97 16
4 N -0.53 -18.69 4.49 -850.20 -3.81 -22.51 16
5 C 0.05 1.22 4.66 86.33 0.40 1.63 16
6 C -0.11 -2.62 6.09 30.65 0.19 -2.43 16
7 C -0.12 -3.05 6.00 30.67 0.18 -2.87 16
8 C -0.10 -3.62 5.35 30.64 0.16 -3.46 16
9 C 0.16 6.34 1.73 44.17 0.08 6.42 16
10 H 0.01 0.57 6.39 -2.38 -0.02 0.55 16
11 C -0.36 -17.74 7.01 24.95 0.17 -17.56 16
12 C 0.00 0.25 8.17 21.98 0.18 0.43 16
13 C -0.48 -28.45 9.64 23.22 0.22 -28.23 16
14 H 0.03 2.20 8.06 -2.91 -0.02 2.17 16
15 C 0.03 1.75 5.52 85.37 0.47 2.22 16
16 N -0.87 -49.42 13.92 21.89 0.30 -49.11 16
17 Si 0.97 41.19 27.47 68.60 1.88 43.08 16
18 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16
19 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16
20 H -0.25 -10.36 6.36 99.48 0.63 -9.73 16
21 H 0.03 1.28 5.81 -2.39 -0.01 1.27 16
22 H 0.07 1.86 6.56 -2.38 -0.02 1.85 16
23 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16
24 H 0.06 2.45 6.76 -2.38 -0.02 2.43 16
25 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16
26 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
27 H 0.07 1.58 6.26 -2.38 -0.01 1.56 16
28 H 0.03 0.74 6.65 -2.39 -0.02 0.72 16
29 H 0.09 2.04 5.98 -2.39 -0.01 2.03 16
30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
31 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16
32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16
33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16
34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
36 H 0.05 2.96 8.05 -2.91 -0.02 2.94 16
37 H 0.07 3.67 4.61 -2.91 -0.01 3.66 16
38 H 0.29 14.81 8.29 -92.70 -0.77 14.04 16
Total: -1.00 -61.28 287.45 2.75 -58.53
By element:
Atomic # 1 Polarization: 18.23 SS G_CDS: 0.94 Total: 19.17 kcal
Atomic # 6 Polarization: -52.60 SS G_CDS: 3.44 Total: -49.16 kcal
Atomic # 7 Polarization: -68.11 SS G_CDS: -3.51 Total: -71.62 kcal
Atomic # 14 Polarization: 41.19 SS G_CDS: 1.88 Total: 43.08 kcal
Total: -61.28 2.75 -58.53 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687681483.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.186 kcal
(2) G-P(sol) polarization free energy of solvation -61.283 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -26.347 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds