Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 N 1.46901 * 109.46994 * 120.00372 * 2 1 3 5 5 C 1.46847 * 111.00144 * 175.00056 * 4 2 1 6 6 C 1.53044 * 109.51335 * 185.83239 * 5 4 2 7 7 C 1.53117 * 109.27792 * 300.82256 * 6 5 4 8 8 C 1.50693 * 109.52032 * 177.55923 * 7 6 5 9 9 C 1.35039 * 119.99787 * 120.00366 * 8 7 6 10 10 C 1.40069 * 120.00191 * 180.02562 * 9 8 7 11 11 H 1.08008 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.40308 * 120.00234 * 179.97438 * 10 9 8 13 13 N 1.30692 * 119.99734 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99983 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46882 * 59.99894 * 14 12 10 16 16 H 1.48503 * 109.47093 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47061 * 299.99995 * 14 12 10 18 18 C 1.53127 * 109.15989 * 57.65607 * 7 6 5 19 19 C 1.46830 * 110.98168 * 299.21474 * 4 2 1 20 20 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46895 * 300.00188 * 1 2 3 22 22 H 1.09005 * 109.46842 * 60.00113 * 1 2 3 23 23 H 1.09007 * 109.46969 * 239.99998 * 2 1 3 24 24 H 1.08998 * 109.46945 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47233 * 299.99926 * 3 2 1 26 26 H 1.09003 * 109.46597 * 60.00014 * 3 2 1 27 27 H 1.09002 * 109.46448 * 65.81961 * 5 4 2 28 28 H 1.08994 * 109.45958 * 305.84326 * 5 4 2 29 29 H 1.09001 * 109.49858 * 60.76701 * 6 5 4 30 30 H 1.09000 * 109.49965 * 180.88251 * 6 5 4 31 31 H 1.09004 * 109.52347 * 297.75632 * 7 6 5 32 32 H 1.07999 * 120.00525 * 299.99855 * 8 7 6 33 33 H 1.07998 * 119.99963 * 0.02562 * 9 8 7 34 34 H 0.96997 * 119.99224 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.50037 * 62.28538 * 18 7 6 36 36 H 1.08996 * 109.50157 * 182.36309 * 18 7 6 37 37 H 1.08995 * 109.46742 * 54.13906 * 19 4 2 38 38 H 1.09004 * 109.45381 * 294.16241 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4827 -0.8165 1.1752 6 6 3.9434 -1.6665 2.3615 7 6 3.4901 -1.0031 3.6650 8 6 3.8888 -1.8660 4.8343 9 6 4.7138 -1.3763 5.7845 10 6 5.0849 -2.1785 6.8712 11 1 4.7114 -3.1889 6.9488 12 6 5.9426 -1.6698 7.8582 13 7 6.3957 -0.4476 7.7634 14 14 6.4368 -2.7394 9.3077 15 1 7.1384 -3.9509 8.8124 16 1 7.3427 -1.9741 10.2015 17 1 5.2227 -3.1438 10.0611 18 6 1.9675 -0.8417 3.6437 19 6 1.5640 -0.0158 2.4202 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.9323 0.1742 1.2418 28 1 3.7913 -1.2936 0.2450 29 1 3.5051 -2.6618 2.2880 30 1 5.0305 -1.7453 2.3522 31 1 3.9589 -0.0234 3.7573 32 1 3.5146 -2.8761 4.9125 33 1 5.0877 -0.3660 5.7066 34 1 6.9884 -0.0959 8.4460 35 1 1.4982 -1.8241 3.5905 36 1 1.6429 -0.3320 4.5508 37 1 0.4794 0.0889 2.3942 38 1 2.0228 0.9712 2.4809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687681495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = -15.830448 kcal Electronic energy + Delta-G solvation = -15393.633118 eV Core-core repulsion = 13041.833503 eV Total energy + Delta-G solvation = -2351.799615 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.13264 -35.36729 -33.81640 -31.39429 -30.34451 -29.15270 -27.20126 -25.43008 -23.03992 -22.38705 -20.23451 -18.78629 -18.30449 -16.70201 -15.89420 -14.85700 -14.78794 -14.23052 -13.98455 -13.43981 -13.32279 -12.83301 -12.63726 -12.37083 -11.99518 -11.73946 -11.47166 -11.30239 -11.24577 -11.05427 -10.89838 -10.85906 -10.40429 -10.27760 -9.81549 -9.72005 -9.39970 -9.32867 -9.04087 -7.95768 -7.54679 -6.66917 -4.16562 3.02671 3.11915 3.16330 3.96933 4.03815 4.16645 4.90355 5.10196 5.27362 5.39872 5.43950 5.53922 5.61698 5.67820 5.76745 5.80038 5.86872 5.90492 6.02586 6.08130 6.17113 6.21796 6.32627 6.39115 6.54718 6.71289 6.77955 7.08113 7.12159 7.26868 7.32141 7.47449 7.49736 7.50778 8.10564 8.51153 8.77482 9.17877 9.37013 10.36998 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066004 B = 0.004785 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.115814 B = 5850.474809 C = 5887.769791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.187 4.187 4 N -0.530 5.530 5 C 0.055 3.945 6 C -0.104 4.104 7 C -0.009 4.009 8 C -0.410 4.410 9 C 0.052 3.948 10 C -0.464 4.464 11 H 0.067 0.933 12 C 0.072 3.928 13 N -0.827 5.827 14 Si 0.911 3.089 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.105 4.105 19 C 0.051 3.949 20 H 0.061 0.939 21 H 0.056 0.944 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.279 0.721 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 2.587 -11.170 13.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.246 4.246 4 N -0.255 5.255 5 C -0.073 4.073 6 C -0.142 4.142 7 C -0.028 4.028 8 C -0.432 4.432 9 C 0.032 3.968 10 C -0.494 4.494 11 H 0.085 0.915 12 C -0.143 4.143 13 N -0.454 5.454 14 Si 0.736 3.264 15 H -0.190 1.190 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.143 4.143 19 C -0.077 4.077 20 H 0.081 0.919 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.855 2.291 -11.036 13.192 hybrid contribution 0.689 0.446 0.721 1.092 sum -6.166 2.737 -10.315 12.326 Atomic orbital electron populations 1.21867 0.94709 1.02272 1.01321 1.21688 0.95539 0.92268 0.93984 1.22488 1.01631 0.98489 1.02009 1.62184 1.11264 1.50538 1.01469 1.22177 0.86882 0.98790 0.99425 1.21674 0.99794 0.99001 0.93764 1.19570 0.92710 0.97001 0.93523 1.21917 1.19010 0.99863 1.02452 1.19919 0.90020 0.95666 0.91193 1.19544 1.24273 1.00281 1.05347 0.91513 1.26085 0.94254 0.94857 0.99141 1.69565 1.26807 1.15217 1.33797 0.86339 0.79066 0.80525 0.80497 1.19033 1.20519 1.19029 1.21676 0.98244 0.99475 0.94871 1.22242 0.99322 0.95707 0.90392 0.91945 0.92485 0.92743 0.90507 0.92507 0.92569 0.92296 0.95265 0.91961 0.92098 0.92236 0.93914 0.91032 0.90570 0.91014 0.92135 0.92279 0.91486 0.95268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 8.99 37.16 0.33 -1.21 16 2 C 0.07 0.90 2.96 -67.71 -0.20 0.70 16 3 C -0.19 -2.14 8.50 37.16 0.32 -1.82 16 4 N -0.53 -7.97 4.64 -226.70 -1.05 -9.03 16 5 C 0.05 0.86 5.03 -3.83 -0.02 0.84 16 6 C -0.10 -1.95 5.36 -26.65 -0.14 -2.09 16 7 C -0.01 -0.20 2.56 -91.65 -0.23 -0.43 16 8 C -0.41 -10.36 8.54 -35.45 -0.30 -10.66 16 9 C 0.05 1.45 9.01 -40.03 -0.36 1.09 16 10 C -0.46 -13.09 9.05 -38.12 -0.35 -13.44 16 11 H 0.07 1.85 7.85 -52.48 -0.41 1.44 16 12 C 0.07 1.92 5.50 -17.26 -0.09 1.83 16 13 N -0.83 -22.63 12.86 55.57 0.71 -21.92 16 14 Si 0.91 19.78 29.56 -169.99 -5.03 14.75 16 15 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 C -0.10 -1.95 5.36 -26.65 -0.14 -2.10 16 19 C 0.05 0.80 4.63 -3.84 -0.02 0.78 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.06 0.62 6.29 -51.93 -0.33 0.29 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 24 H 0.06 0.68 6.65 -51.93 -0.35 0.34 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.71 6.52 -51.93 -0.34 0.37 16 27 H 0.03 0.46 6.73 -51.93 -0.35 0.11 16 28 H 0.06 0.88 8.08 -51.93 -0.42 0.46 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.04 0.95 7.84 -51.93 -0.41 0.54 16 32 H 0.07 1.87 8.05 -52.49 -0.42 1.45 16 33 H 0.08 2.21 7.26 -52.49 -0.38 1.83 16 34 H 0.28 6.97 8.29 -40.82 -0.34 6.63 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 0.95 6.03 -51.93 -0.31 0.64 16 38 H 0.03 0.46 6.62 -51.93 -0.34 0.12 16 LS Contribution 295.17 15.07 4.45 4.45 Total: -1.00 -27.58 295.17 -8.70 -36.28 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -6.57 Total: 1.98 kcal Atomic # 6 Polarization: -25.30 SS G_CDS: -1.21 Total: -26.51 kcal Atomic # 7 Polarization: -30.61 SS G_CDS: -0.34 Total: -30.94 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.58 -8.70 -36.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.446 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds