Wall clock time and date at job start Mon Mar 30 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 N 1.46901 * 109.46994 * 120.00372 * 2 1 3 5 5 C 1.46847 * 111.00144 * 175.00056 * 4 2 1 6 6 C 1.53044 * 109.51335 * 185.83239 * 5 4 2 7 7 C 1.53117 * 109.27792 * 300.82256 * 6 5 4 8 8 C 1.50693 * 109.52032 * 177.55923 * 7 6 5 9 9 C 1.35039 * 119.99787 * 120.00366 * 8 7 6 10 10 C 1.40069 * 120.00191 * 180.02562 * 9 8 7 11 11 H 1.08008 * 119.99764 * 0.02562 * 10 9 8 12 12 C 1.40308 * 120.00234 * 179.97438 * 10 9 8 13 13 N 1.30692 * 119.99734 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99983 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46882 * 59.99894 * 14 12 10 16 16 H 1.48503 * 109.47093 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47061 * 299.99995 * 14 12 10 18 18 C 1.53127 * 109.15989 * 57.65607 * 7 6 5 19 19 C 1.46830 * 110.98168 * 299.21474 * 4 2 1 20 20 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 21 21 H 1.08997 * 109.46895 * 300.00188 * 1 2 3 22 22 H 1.09005 * 109.46842 * 60.00113 * 1 2 3 23 23 H 1.09007 * 109.46969 * 239.99998 * 2 1 3 24 24 H 1.08998 * 109.46945 * 179.97438 * 3 2 1 25 25 H 1.08992 * 109.47233 * 299.99926 * 3 2 1 26 26 H 1.09003 * 109.46597 * 60.00014 * 3 2 1 27 27 H 1.09002 * 109.46448 * 65.81961 * 5 4 2 28 28 H 1.08994 * 109.45958 * 305.84326 * 5 4 2 29 29 H 1.09001 * 109.49858 * 60.76701 * 6 5 4 30 30 H 1.09000 * 109.49965 * 180.88251 * 6 5 4 31 31 H 1.09004 * 109.52347 * 297.75632 * 7 6 5 32 32 H 1.07999 * 120.00525 * 299.99855 * 8 7 6 33 33 H 1.07998 * 119.99963 * 0.02562 * 9 8 7 34 34 H 0.96997 * 119.99224 * 179.97438 * 13 12 10 35 35 H 1.08997 * 109.50037 * 62.28538 * 18 7 6 36 36 H 1.08996 * 109.50157 * 182.36309 * 18 7 6 37 37 H 1.08995 * 109.46742 * 54.13906 * 19 4 2 38 38 H 1.09004 * 109.45381 * 294.16241 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 3.4827 -0.8165 1.1752 6 6 3.9434 -1.6665 2.3615 7 6 3.4901 -1.0031 3.6650 8 6 3.8888 -1.8660 4.8343 9 6 4.7138 -1.3763 5.7845 10 6 5.0849 -2.1785 6.8712 11 1 4.7114 -3.1889 6.9488 12 6 5.9426 -1.6698 7.8582 13 7 6.3957 -0.4476 7.7634 14 14 6.4368 -2.7394 9.3077 15 1 7.1384 -3.9509 8.8124 16 1 7.3427 -1.9741 10.2015 17 1 5.2227 -3.1438 10.0611 18 6 1.9675 -0.8417 3.6437 19 6 1.5640 -0.0158 2.4202 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.9323 0.1742 1.2418 28 1 3.7913 -1.2936 0.2450 29 1 3.5051 -2.6618 2.2880 30 1 5.0305 -1.7453 2.3522 31 1 3.9589 -0.0234 3.7573 32 1 3.5146 -2.8761 4.9125 33 1 5.0877 -0.3660 5.7066 34 1 6.9884 -0.0959 8.4460 35 1 1.4982 -1.8241 3.5905 36 1 1.6429 -0.3320 4.5508 37 1 0.4794 0.0889 2.3942 38 1 2.0228 0.9712 2.4809 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687681495.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:59 Heat of formation + Delta-G solvation = -31.231517 kcal Electronic energy + Delta-G solvation = -15394.300959 eV Core-core repulsion = 13041.833503 eV Total energy + Delta-G solvation = -2352.467455 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40213 -36.95389 -35.69037 -33.06405 -31.76472 -30.73287 -28.07425 -27.25202 -24.57359 -23.83606 -21.57233 -20.31781 -20.11276 -18.81830 -17.05704 -16.73559 -15.94483 -15.49602 -15.18973 -15.03433 -14.81946 -14.25318 -14.17922 -13.64998 -13.26195 -13.09298 -13.03439 -12.89847 -12.63789 -12.46088 -12.23583 -11.99879 -11.91290 -11.67407 -11.65703 -11.45425 -11.30381 -11.13648 -10.78851 -9.65065 -9.14156 -8.68698 -6.30484 1.26437 1.35394 1.48566 1.97311 2.21214 3.01422 3.37164 3.95515 4.03467 4.07785 4.22720 4.28946 4.43416 4.46756 4.60059 4.64473 4.71642 4.77709 4.82183 4.88193 4.93636 4.96890 5.03991 5.07653 5.18825 5.22375 5.25448 5.35820 5.39434 5.48766 5.54855 5.66771 5.97023 6.23402 6.31448 6.40482 6.62706 7.04631 7.21934 8.37188 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066004 B = 0.004785 C = 0.004754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.115814 B = 5850.474809 C = 5887.769791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.072 3.928 3 C -0.184 4.184 4 N -0.539 5.539 5 C 0.063 3.937 6 C -0.099 4.099 7 C -0.012 4.012 8 C -0.394 4.394 9 C 0.022 3.978 10 C -0.503 4.503 11 H 0.063 0.937 12 C 0.027 3.973 13 N -0.860 5.860 14 Si 0.989 3.011 15 H -0.259 1.259 16 H -0.264 1.264 17 H -0.259 1.259 18 C -0.099 4.099 19 C 0.060 3.940 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.047 0.953 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.290 0.710 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.088 0.912 38 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.509 2.451 -12.073 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.242 4.242 4 N -0.264 5.264 5 C -0.065 4.065 6 C -0.137 4.137 7 C -0.031 4.031 8 C -0.416 4.416 9 C 0.002 3.998 10 C -0.533 4.533 11 H 0.081 0.919 12 C -0.186 4.186 13 N -0.487 5.487 14 Si 0.809 3.191 15 H -0.184 1.184 16 H -0.188 1.188 17 H -0.183 1.183 18 C -0.137 4.137 19 C -0.067 4.067 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.094 0.906 23 H 0.106 0.894 24 H 0.066 0.934 25 H 0.095 0.905 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.556 2.168 -11.966 14.317 hybrid contribution 0.858 0.510 0.910 1.351 sum -6.698 2.678 -11.055 13.200 Atomic orbital electron populations 1.21848 0.93372 1.02325 1.02263 1.21824 0.96581 0.92493 0.92739 1.22446 1.01057 0.98057 1.02672 1.62171 1.10575 1.51356 1.02264 1.22052 0.87625 0.98186 0.98628 1.21542 0.99274 0.99117 0.93763 1.19587 0.94672 0.95526 0.93320 1.22177 1.16883 0.99598 1.02900 1.19945 0.91938 0.95069 0.92807 1.19761 1.26323 1.00394 1.06856 0.91922 1.27027 0.93443 0.96270 1.01839 1.69623 1.27161 1.16797 1.35156 0.85163 0.79023 0.78515 0.76408 1.18358 1.18801 1.18345 1.21549 0.95907 0.99833 0.96460 1.22103 1.00513 0.94757 0.89359 0.92328 0.92820 0.90559 0.89448 0.93350 0.90450 0.93095 0.95352 0.89774 0.92549 0.93119 0.95455 0.92069 0.92680 0.90000 0.92591 0.93183 0.89431 0.95431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 8.99 71.98 0.65 -1.91 16 2 C 0.07 1.53 2.96 44.92 0.13 1.66 16 3 C -0.18 -3.70 8.50 71.98 0.61 -3.09 16 4 N -0.54 -15.10 4.64 -871.13 -4.04 -19.15 16 5 C 0.06 1.88 5.03 86.33 0.43 2.31 16 6 C -0.10 -3.68 5.36 30.65 0.16 -3.52 16 7 C -0.01 -0.54 2.56 -11.46 -0.03 -0.56 16 8 C -0.39 -20.62 8.54 24.95 0.21 -20.40 16 9 C 0.02 1.31 9.01 21.98 0.20 1.50 16 10 C -0.50 -29.38 9.05 23.22 0.21 -29.17 16 11 H 0.06 3.59 7.85 -2.91 -0.02 3.57 16 12 C 0.03 1.43 5.50 85.37 0.47 1.90 16 13 N -0.86 -48.01 12.86 21.89 0.28 -47.73 16 14 Si 0.99 40.52 29.56 68.60 2.03 42.55 16 15 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 16 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 17 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 18 C -0.10 -3.71 5.36 30.65 0.16 -3.55 16 19 C 0.06 1.80 4.63 86.33 0.40 2.20 16 20 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 21 H 0.05 1.01 6.29 -2.39 -0.02 0.99 16 22 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 23 H 0.09 1.73 8.08 -2.38 -0.02 1.71 16 24 H 0.05 1.05 6.65 -2.39 -0.02 1.04 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.11 6.52 -2.39 -0.02 1.09 16 27 H 0.03 0.86 6.73 -2.39 -0.02 0.84 16 28 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.03 1.25 7.84 -2.38 -0.02 1.23 16 32 H 0.06 3.30 8.05 -2.91 -0.02 3.28 16 33 H 0.05 3.40 7.26 -2.91 -0.02 3.37 16 34 H 0.29 14.53 8.29 -92.71 -0.77 13.76 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 2.29 6.03 -2.39 -0.01 2.27 16 38 H 0.03 0.84 6.62 -2.38 -0.02 0.83 16 Total: -1.00 -60.79 295.17 2.88 -57.91 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 1.00 Total: 19.04 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 3.62 Total: -52.62 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -3.76 Total: -66.88 kcal Atomic # 14 Polarization: 40.52 SS G_CDS: 2.03 Total: 42.55 kcal Total: -60.79 2.88 -57.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687681495.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.682 kcal (2) G-P(sol) polarization free energy of solvation -60.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds