Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 H 1.08994 * 109.46663 * 300.34476 * 3 2 1 5 5 C 1.50704 * 109.47092 * 180.34827 * 3 2 1 6 6 H 1.07997 * 119.99635 * 240.00532 * 5 3 2 7 7 C 1.37874 * 119.99753 * 59.99612 * 5 3 2 8 8 N 1.31507 * 120.00535 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99480 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46971 * 60.00454 * 9 7 5 11 11 H 1.48506 * 109.46647 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47065 * 300.00092 * 9 7 5 13 13 N 1.46901 * 109.47126 * 60.34731 * 3 2 1 14 14 C 1.46900 * 110.99846 * 209.64424 * 13 3 2 15 15 C 1.52306 * 115.91025 * 279.33775 * 14 13 3 16 16 C 1.52067 * 115.30935 * 211.25810 * 14 13 3 17 17 H 1.08996 * 117.26161 * 359.63109 * 16 14 13 18 18 C 1.52715 * 120.51909 * 211.01041 * 16 14 13 19 19 C 1.52881 * 110.15323 * 21.46783 * 18 16 14 20 20 C 1.53292 * 108.55005 * 305.47156 * 19 18 16 21 21 C 1.52066 * 114.63896 * 65.57954 * 14 13 3 22 22 H 1.08997 * 109.47185 * 54.45226 * 1 2 3 23 23 H 1.09005 * 109.47410 * 174.45607 * 1 2 3 24 24 H 1.09003 * 109.47261 * 294.45065 * 1 2 3 25 25 H 1.09000 * 109.47536 * 239.99604 * 2 1 3 26 26 H 1.09001 * 109.47131 * 119.99830 * 2 1 3 27 27 H 0.96997 * 120.00217 * 179.97438 * 8 7 5 28 28 H 1.00896 * 110.99882 * 85.69017 * 13 3 2 29 29 H 1.08997 * 117.54107 * 1.58674 * 15 14 13 30 30 H 1.08997 * 117.53852 * 146.76638 * 15 14 13 31 31 H 1.09003 * 109.35872 * 141.67775 * 18 16 14 32 32 H 1.09001 * 109.35619 * 261.39625 * 18 16 14 33 33 H 1.09003 * 109.61513 * 65.20476 * 19 18 16 34 34 H 1.08998 * 109.62070 * 185.56668 * 19 18 16 35 35 H 1.08997 * 109.64387 * 314.74318 * 20 19 18 36 36 H 1.08996 * 109.58508 * 194.20488 * 20 19 18 37 37 H 1.08997 * 109.27252 * 285.89421 * 21 14 13 38 38 H 1.08998 * 109.26900 * 45.40084 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6716 1.9580 -0.8868 5 6 3.5470 1.4425 -0.0086 6 1 4.0916 1.9085 0.7993 7 6 4.2304 0.8475 -1.0478 8 7 3.5672 0.2804 -2.0317 9 14 6.0984 0.8469 -1.0581 10 1 6.5998 0.1440 0.1501 11 1 6.5864 0.1499 -2.2752 12 1 6.5939 2.2468 -1.0577 13 7 1.5572 2.1326 1.2036 14 6 1.3883 3.5703 0.9540 15 6 2.6569 4.4106 1.0190 16 6 1.6254 4.4711 2.1561 17 1 1.8919 3.9888 3.0965 18 6 0.8643 5.7871 2.3012 19 6 -0.4134 5.7519 1.4624 20 6 -0.0386 5.4042 0.0172 21 6 0.3027 3.9157 -0.0533 22 1 -0.3633 0.5974 -0.8361 23 1 -0.3634 -1.0229 -0.0993 24 1 -0.3634 0.4254 0.9355 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.0481 -0.1378 -2.7630 28 1 2.1747 1.9713 1.9851 29 1 3.5952 3.8923 1.2168 30 1 2.7260 5.2712 0.3536 31 1 0.6047 5.9408 3.3486 32 1 1.4949 6.6085 1.9610 33 1 -1.0899 4.9942 1.8578 34 1 -0.8984 6.7275 1.4932 35 1 0.8263 5.9928 -0.2887 36 1 -0.8812 5.6180 -0.6403 37 1 0.6531 3.6742 -1.0568 38 1 -0.5907 3.3311 0.1661 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693251408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -0.090838 kcal Electronic energy + Delta-G solvation = -16262.737038 eV Core-core repulsion = 13911.619944 eV Total energy + Delta-G solvation = -2351.117094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40297 -35.44579 -32.97458 -31.68628 -30.56381 -28.98361 -26.04851 -24.26713 -22.77158 -21.56195 -20.66571 -19.03649 -17.79531 -16.50550 -15.74293 -14.66760 -14.18308 -13.84362 -13.58365 -13.40243 -12.85485 -12.81249 -12.57870 -12.02492 -11.52121 -11.40290 -11.24629 -11.10208 -10.86686 -10.65837 -10.56684 -10.48153 -10.30169 -10.11784 -9.64886 -9.58029 -9.41056 -9.08698 -8.65331 -8.33988 -7.13724 -5.96617 -4.07677 3.29154 3.34295 3.36718 4.34551 4.43747 4.98581 5.11003 5.19758 5.27500 5.35107 5.57402 5.65626 5.69362 5.86218 5.97857 5.99475 6.07504 6.28024 6.36031 6.42759 6.49648 6.53254 6.55385 6.67236 6.73259 6.75947 6.79554 6.89001 7.18448 7.20775 7.49299 7.64996 7.81283 8.12448 8.18475 8.37519 8.69619 9.03397 9.58538 11.04143 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.009265 C = 0.007878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.036565 B = 3021.371097 C = 3553.395539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.036 0.964 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.659 5.659 14 C 0.099 3.901 15 C -0.207 4.207 16 C -0.165 4.165 17 H 0.093 0.907 18 C -0.082 4.082 19 C -0.117 4.117 20 C -0.119 4.119 21 C -0.071 4.071 22 H 0.035 0.965 23 H 0.023 0.977 24 H 0.047 0.953 25 H 0.088 0.912 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 7.879 4.902 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.110 3.890 4 H 0.054 0.946 5 C -0.576 4.576 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.287 5.287 14 C 0.006 3.994 15 C -0.247 4.247 16 C -0.184 4.184 17 H 0.111 0.889 18 C -0.120 4.120 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.108 4.108 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.107 0.893 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.439 7.581 4.593 10.956 hybrid contribution 2.266 0.216 -0.047 2.277 sum -4.173 7.797 4.546 9.944 Atomic orbital electron populations 1.21686 0.99041 0.98121 1.00427 1.21521 0.91987 0.99374 1.01645 1.19133 0.92062 0.90522 0.87245 0.94622 1.21795 0.92406 1.36428 1.06999 0.92968 1.24904 0.97922 0.95145 0.95531 1.69862 1.35073 1.37208 1.10349 0.86759 0.86370 0.78100 0.77351 1.20386 1.21284 1.20450 1.60727 1.53572 1.05208 1.09178 1.20941 0.95266 0.87455 0.95708 1.23688 0.95714 1.03970 1.01311 1.22445 1.03502 0.98479 0.93977 0.88886 1.20977 0.96052 0.95631 0.99315 1.21547 0.97409 1.00667 0.95810 1.21598 1.00738 0.96981 0.96368 1.20658 0.97364 0.94653 0.98161 0.94537 0.95810 0.93378 0.89349 0.95136 0.92917 0.85412 0.88672 0.89994 0.92400 0.92342 0.91692 0.92693 0.92155 0.92189 0.91455 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.68 37.16 0.36 -2.44 16 2 C -0.11 -2.56 5.43 -26.73 -0.15 -2.71 16 3 C 0.22 5.31 1.93 -68.86 -0.13 5.18 16 4 H 0.04 0.96 6.37 -51.93 -0.33 0.63 16 5 C -0.54 -14.29 7.87 -34.44 -0.27 -14.56 16 6 H 0.05 1.38 6.63 -52.49 -0.35 1.03 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.66 -13.86 5.71 -95.57 -0.55 -14.41 16 14 C 0.10 1.86 2.20 -132.91 -0.29 1.56 16 15 C -0.21 -3.84 8.99 -26.75 -0.24 -4.08 16 16 C -0.17 -2.68 5.83 -90.91 -0.53 -3.21 16 17 H 0.09 1.51 8.06 -51.93 -0.42 1.09 16 18 C -0.08 -1.10 5.83 -26.94 -0.16 -1.26 16 19 C -0.12 -1.50 5.93 -26.64 -0.16 -1.65 16 20 C -0.12 -1.67 5.70 -26.64 -0.15 -1.82 16 21 C -0.07 -1.23 5.16 -27.27 -0.14 -1.37 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 23 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.05 0.95 7.79 -51.93 -0.40 0.55 16 25 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.33 6.97 7.99 -39.29 -0.31 6.65 16 29 H 0.09 1.95 6.83 -51.93 -0.35 1.60 16 30 H 0.08 1.45 7.26 -51.93 -0.38 1.08 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 33 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.86 7.10 -51.93 -0.37 0.49 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.29 7.12 -51.93 -0.37 0.92 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 290.35 15.07 4.38 4.38 Total: -1.00 -26.89 290.35 -9.05 -35.94 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.53 Total: 6.89 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -1.96 Total: -24.62 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.08 Total: -38.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -26.89 -9.05 -35.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693251408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.848 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds