Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47119 * 2 1 4 4 H 1.08994 * 109.46663 * 300.34476 * 3 2 1 5 5 C 1.50704 * 109.47092 * 180.34827 * 3 2 1 6 6 H 1.07997 * 119.99635 * 240.00532 * 5 3 2 7 7 C 1.37874 * 119.99753 * 59.99612 * 5 3 2 8 8 N 1.31507 * 120.00535 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99480 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46971 * 60.00454 * 9 7 5 11 11 H 1.48506 * 109.46647 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47065 * 300.00092 * 9 7 5 13 13 N 1.46901 * 109.47126 * 60.34731 * 3 2 1 14 14 C 1.46900 * 110.99846 * 209.64424 * 13 3 2 15 15 C 1.52306 * 115.91025 * 279.33775 * 14 13 3 16 16 C 1.52067 * 115.30935 * 211.25810 * 14 13 3 17 17 H 1.08996 * 117.26161 * 359.63109 * 16 14 13 18 18 C 1.52715 * 120.51909 * 211.01041 * 16 14 13 19 19 C 1.52881 * 110.15323 * 21.46783 * 18 16 14 20 20 C 1.53292 * 108.55005 * 305.47156 * 19 18 16 21 21 C 1.52066 * 114.63896 * 65.57954 * 14 13 3 22 22 H 1.08997 * 109.47185 * 54.45226 * 1 2 3 23 23 H 1.09005 * 109.47410 * 174.45607 * 1 2 3 24 24 H 1.09003 * 109.47261 * 294.45065 * 1 2 3 25 25 H 1.09000 * 109.47536 * 239.99604 * 2 1 3 26 26 H 1.09001 * 109.47131 * 119.99830 * 2 1 3 27 27 H 0.96997 * 120.00217 * 179.97438 * 8 7 5 28 28 H 1.00896 * 110.99882 * 85.69017 * 13 3 2 29 29 H 1.08997 * 117.54107 * 1.58674 * 15 14 13 30 30 H 1.08997 * 117.53852 * 146.76638 * 15 14 13 31 31 H 1.09003 * 109.35872 * 141.67775 * 18 16 14 32 32 H 1.09001 * 109.35619 * 261.39625 * 18 16 14 33 33 H 1.09003 * 109.61513 * 65.20476 * 19 18 16 34 34 H 1.08998 * 109.62070 * 185.56668 * 19 18 16 35 35 H 1.08997 * 109.64387 * 314.74318 * 20 19 18 36 36 H 1.08996 * 109.58508 * 194.20488 * 20 19 18 37 37 H 1.08997 * 109.27252 * 285.89421 * 21 14 13 38 38 H 1.08998 * 109.26900 * 45.40084 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6716 1.9580 -0.8868 5 6 3.5470 1.4425 -0.0086 6 1 4.0916 1.9085 0.7993 7 6 4.2304 0.8475 -1.0478 8 7 3.5672 0.2804 -2.0317 9 14 6.0984 0.8469 -1.0581 10 1 6.5998 0.1440 0.1501 11 1 6.5864 0.1499 -2.2752 12 1 6.5939 2.2468 -1.0577 13 7 1.5572 2.1326 1.2036 14 6 1.3883 3.5703 0.9540 15 6 2.6569 4.4106 1.0190 16 6 1.6254 4.4711 2.1561 17 1 1.8919 3.9888 3.0965 18 6 0.8643 5.7871 2.3012 19 6 -0.4134 5.7519 1.4624 20 6 -0.0386 5.4042 0.0172 21 6 0.3027 3.9157 -0.0533 22 1 -0.3633 0.5974 -0.8361 23 1 -0.3634 -1.0229 -0.0993 24 1 -0.3634 0.4254 0.9355 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.0481 -0.1378 -2.7630 28 1 2.1747 1.9713 1.9851 29 1 3.5952 3.8923 1.2168 30 1 2.7260 5.2712 0.3536 31 1 0.6047 5.9408 3.3486 32 1 1.4949 6.6085 1.9610 33 1 -1.0899 4.9942 1.8578 34 1 -0.8984 6.7275 1.4932 35 1 0.8263 5.9928 -0.2887 36 1 -0.8812 5.6180 -0.6403 37 1 0.6531 3.6742 -1.0568 38 1 -0.5907 3.3311 0.1661 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693251408.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -14.670266 kcal Electronic energy + Delta-G solvation = -16263.369250 eV Core-core repulsion = 13911.619944 eV Total energy + Delta-G solvation = -2351.749306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.80414 -37.20751 -34.49468 -33.55808 -32.00129 -30.52487 -28.00664 -25.54069 -24.67861 -22.79680 -22.20099 -20.79218 -19.17775 -18.53545 -17.21076 -16.65935 -15.63737 -15.25314 -14.98334 -14.80224 -14.65209 -14.27949 -14.09622 -13.55358 -13.20409 -13.05055 -12.95629 -12.77578 -12.52447 -12.44429 -12.11192 -11.96124 -11.67444 -11.54281 -11.43318 -11.19595 -11.15143 -10.67489 -10.43508 -10.24246 -8.89396 -8.03368 -6.23308 1.36869 1.37334 1.44511 2.39488 2.93255 3.16029 3.60494 3.88902 3.97470 3.99913 4.29060 4.35022 4.43197 4.60694 4.66166 4.75551 4.77220 4.79021 4.92106 4.99062 5.04839 5.09865 5.22456 5.29788 5.30155 5.36760 5.41546 5.44975 5.48509 5.54903 5.58452 5.68192 5.81664 6.13942 6.22072 6.43563 6.85393 7.03730 7.46288 8.93196 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028681 B = 0.009265 C = 0.007878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.036565 B = 3021.371097 C = 3553.395539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.104 4.104 3 C 0.228 3.772 4 H 0.005 0.995 5 C -0.547 4.547 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.277 1.277 13 N -0.654 5.654 14 C 0.075 3.925 15 C -0.220 4.220 16 C -0.135 4.135 17 H 0.096 0.904 18 C -0.082 4.082 19 C -0.112 4.112 20 C -0.114 4.114 21 C -0.067 4.067 22 H 0.031 0.969 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.036 0.964 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 9.323 6.166 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.143 4.143 3 C 0.120 3.880 4 H 0.023 0.977 5 C -0.586 4.586 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.202 1.202 13 N -0.280 5.280 14 C -0.017 4.017 15 C -0.259 4.259 16 C -0.154 4.154 17 H 0.114 0.886 18 C -0.119 4.119 19 C -0.149 4.149 20 C -0.152 4.152 21 C -0.105 4.105 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.055 0.945 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.140 9.037 5.870 12.926 hybrid contribution 2.481 -0.229 -0.434 2.529 sum -4.659 8.808 5.436 11.351 Atomic orbital electron populations 1.21529 0.96307 0.99368 1.00699 1.21391 0.94419 0.98643 0.99800 1.18855 0.90918 0.90778 0.87476 0.97682 1.22091 0.93803 1.35920 1.06761 0.93388 1.25609 1.01938 0.95085 0.95396 1.69994 1.36438 1.37916 1.10813 0.85825 0.81614 0.78029 0.77417 1.19884 1.20949 1.20233 1.60675 1.52770 1.06984 1.07603 1.21177 0.95960 0.86321 0.98271 1.23590 0.94779 1.04049 1.03509 1.22550 1.01271 0.98917 0.92662 0.88615 1.21057 0.96128 0.93703 1.01025 1.21535 0.97073 1.02178 0.94132 1.21588 1.01362 0.94034 0.98205 1.20632 0.96539 0.97350 0.95990 0.94973 0.93898 0.92425 0.92277 0.95744 0.93038 0.85664 0.91241 0.89415 0.90139 0.91400 0.91935 0.89769 0.92396 0.90374 0.94542 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.68 71.98 0.70 -4.28 16 2 C -0.10 -5.08 5.43 30.59 0.17 -4.92 16 3 C 0.23 11.44 1.93 44.17 0.09 11.52 16 4 H 0.01 0.30 6.37 -2.39 -0.02 0.28 16 5 C -0.55 -29.77 7.87 25.60 0.20 -29.57 16 6 H 0.05 2.60 6.63 -2.91 -0.02 2.58 16 7 C 0.02 1.07 5.30 84.65 0.45 1.52 16 8 N -0.91 -52.79 11.32 21.45 0.24 -52.54 16 9 Si 0.94 44.13 29.54 68.60 2.03 46.16 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 13 N -0.65 -27.72 5.71 -456.27 -2.61 -30.32 16 14 C 0.08 2.80 2.20 2.68 0.01 2.80 16 15 C -0.22 -8.11 8.99 30.58 0.27 -7.84 16 16 C -0.14 -4.15 5.83 -10.98 -0.06 -4.21 16 17 H 0.10 2.90 8.06 -2.39 -0.02 2.88 16 18 C -0.08 -1.89 5.83 30.46 0.18 -1.71 16 19 C -0.11 -2.45 5.93 30.65 0.18 -2.27 16 20 C -0.11 -2.96 5.70 30.65 0.17 -2.79 16 21 C -0.07 -2.32 5.16 30.25 0.16 -2.17 16 22 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.04 1.56 8.14 -2.38 -0.02 1.55 16 24 H 0.06 2.23 7.79 -2.39 -0.02 2.21 16 25 H 0.06 3.25 6.06 -2.39 -0.01 3.24 16 26 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 28 H 0.33 13.94 7.99 -89.70 -0.72 13.22 16 29 H 0.07 2.91 6.83 -2.39 -0.02 2.89 16 30 H 0.09 3.08 7.26 -2.39 -0.02 3.07 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.50 8.06 -2.39 -0.02 1.48 16 33 H 0.06 1.43 8.04 -2.39 -0.02 1.41 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.54 7.10 -2.39 -0.02 1.52 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.04 1.45 7.12 -2.39 -0.02 1.43 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -58.41 290.35 2.47 -55.94 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.30 Total: 24.68 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.51 Total: -43.91 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -2.36 Total: -82.87 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -58.41 2.47 -55.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693251408.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.271 kcal (2) G-P(sol) polarization free energy of solvation -58.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds