Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46747 * 2 1 4 4 H 1.08991 * 109.47399 * 301.54451 * 3 2 1 5 5 C 1.50706 * 109.46812 * 181.54329 * 3 2 1 6 6 H 1.07999 * 119.99947 * 240.00111 * 5 3 2 7 7 C 1.37882 * 119.99922 * 60.00619 * 5 3 2 8 8 N 1.31518 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00065 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47309 * 59.99438 * 9 7 5 11 11 H 1.48498 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46926 * 299.99733 * 9 7 5 13 13 N 1.46900 * 109.47017 * 61.54888 * 3 2 1 14 14 C 1.46898 * 110.99808 * 217.15665 * 13 3 2 15 15 C 1.53001 * 115.55103 * 185.45492 * 14 13 3 16 16 C 1.53779 * 113.69037 * 295.34997 * 15 14 13 17 17 C 1.53781 * 87.07953 * 139.99084 * 16 15 14 18 18 C 1.53784 * 113.61075 * 32.88694 * 15 14 13 19 19 C 1.52999 * 117.49786 * 331.12165 * 14 13 3 20 20 C 1.52998 * 117.50213 * 39.78183 * 14 13 3 21 21 H 1.09000 * 109.47501 * 54.75017 * 1 2 3 22 22 H 1.09010 * 109.46895 * 174.74273 * 1 2 3 23 23 H 1.08995 * 109.47359 * 294.74508 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00336 * 2 1 3 25 25 H 1.08996 * 109.47158 * 120.00453 * 2 1 3 26 26 H 0.96996 * 119.99964 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00036 * 93.19972 * 13 3 2 28 28 H 1.09002 * 112.84987 * 164.07799 * 15 14 13 29 29 H 1.08997 * 113.61636 * 254.53958 * 16 15 14 30 30 H 1.09006 * 113.61017 * 25.44983 * 16 15 14 31 31 H 1.09006 * 113.61620 * 220.01976 * 17 16 15 32 32 H 1.09002 * 113.61426 * 89.11961 * 17 16 15 33 33 H 1.08994 * 113.61446 * 334.48365 * 18 15 14 34 34 H 1.09003 * 113.61228 * 105.39165 * 18 15 14 35 35 H 1.08998 * 117.50112 * 215.00261 * 19 14 13 36 36 H 1.09001 * 117.50010 * 0.02989 * 19 14 13 37 37 H 1.09007 * 117.49356 * 359.97438 * 20 14 13 38 38 H 1.09000 * 117.50296 * 144.97022 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6541 1.9643 -0.8757 5 6 3.5464 1.4427 -0.0383 6 1 4.1069 1.9031 0.7619 7 6 4.2093 0.8552 -1.0949 8 7 3.5268 0.2942 -2.0692 9 14 6.0767 0.8548 -1.1421 10 1 6.6018 0.1435 0.0510 11 1 6.5407 0.1654 -2.3728 12 1 6.5721 2.2547 -1.1416 13 7 1.5810 2.1241 1.2177 14 6 1.2369 3.5248 0.9391 15 6 0.8696 4.3696 2.1607 16 6 -0.4131 3.9048 2.8703 17 6 0.3093 4.1952 4.1965 18 6 1.6274 3.9687 3.4374 19 6 1.9790 4.2206 -0.2037 20 6 0.5097 3.8262 -0.3728 21 1 -0.3634 0.5931 -0.8392 22 1 -0.3633 -1.0234 -0.0942 23 1 -0.3634 0.4301 0.9332 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9931 -0.1195 -2.8123 27 1 2.2720 2.0602 1.9501 28 1 0.8926 5.4402 1.9573 29 1 -1.2712 4.5521 2.6897 30 1 -0.6382 2.8491 2.7180 31 1 0.1177 3.4516 4.9701 32 1 0.1790 5.2182 4.5497 33 1 1.9599 2.9307 3.4399 34 1 2.4165 4.6678 3.7144 35 1 2.2055 5.2802 -0.0853 36 1 2.7221 3.6389 -0.7491 37 1 0.2869 2.9851 -1.0294 38 1 -0.2309 4.6260 -0.3656 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697402392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = 38.699396 kcal Electronic energy + Delta-G solvation = -16287.930143 eV Core-core repulsion = 13938.495120 eV Total energy + Delta-G solvation = -2349.435023 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.31495 -36.63976 -33.97712 -31.63944 -29.75423 -26.62533 -25.26809 -25.20782 -22.72638 -21.50077 -20.11613 -19.25815 -18.08805 -16.75732 -15.39284 -15.32679 -14.73453 -14.13096 -13.31235 -13.01063 -12.71090 -12.48575 -12.14373 -11.93795 -11.74507 -11.16838 -11.15706 -11.06515 -10.73291 -10.64843 -10.53525 -10.29728 -10.17928 -10.03857 -9.71204 -9.49542 -9.34795 -9.15031 -8.82627 -8.32513 -7.03896 -5.99223 -4.10239 3.28523 3.33839 3.36374 4.39370 4.50822 5.00463 5.02908 5.07208 5.20996 5.32058 5.43301 5.63458 5.76255 5.94510 5.98114 6.03995 6.19175 6.21958 6.30535 6.35898 6.43192 6.52762 6.59174 6.61123 6.75155 6.84645 6.91777 7.18478 7.19321 7.21563 7.50800 7.63758 7.80128 8.12394 8.16741 8.38510 8.71174 9.02940 9.55828 11.01349 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.009110 C = 0.008232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.522745 B = 3072.651449 C = 3400.381692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 C 0.205 3.795 4 H 0.044 0.956 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.648 5.648 14 C 0.077 3.923 15 C -0.067 4.067 16 C -0.125 4.125 17 C -0.144 4.144 18 C -0.134 4.134 19 C -0.220 4.220 20 C -0.177 4.177 21 H 0.034 0.966 22 H 0.023 0.977 23 H 0.047 0.953 24 H 0.088 0.912 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.331 0.669 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.296 6.068 7.010 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.144 4.144 3 C 0.097 3.903 4 H 0.062 0.938 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.278 5.278 14 C -0.016 4.016 15 C -0.086 4.086 16 C -0.162 4.162 17 C -0.182 4.182 18 C -0.172 4.172 19 C -0.260 4.260 20 C -0.215 4.215 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.106 0.894 25 H 0.049 0.951 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.919 5.706 6.788 10.661 hybrid contribution 2.014 0.405 -0.366 2.086 sum -3.905 6.111 6.422 9.687 Atomic orbital electron populations 1.21687 0.99117 0.98099 1.00361 1.21505 0.91917 0.99388 1.01566 1.19358 0.92474 0.90907 0.87531 0.93785 1.21769 0.92293 1.36946 1.06661 0.92886 1.24916 0.97959 0.95065 0.95595 1.69870 1.35088 1.37280 1.10076 0.86734 0.86229 0.78148 0.77337 1.20336 1.21314 1.20404 1.60664 1.46843 1.08526 1.11769 1.21252 1.02106 0.90225 0.88011 1.21975 0.96773 0.97566 0.92324 1.22841 0.95991 1.02381 0.94993 1.22809 0.97587 1.00756 0.97036 1.22917 0.96105 1.02351 0.95797 1.23784 0.95684 1.00113 1.06394 1.23078 0.94979 1.02653 1.00801 0.94658 0.95826 0.93366 0.89418 0.95133 0.92868 0.84875 0.90015 0.92660 0.88957 0.91872 0.91096 0.89096 0.92352 0.90987 0.86231 0.88555 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.70 37.16 0.36 -2.44 16 2 C -0.11 -2.51 5.43 -26.73 -0.15 -2.66 16 3 C 0.20 4.90 1.37 -68.86 -0.09 4.81 16 4 H 0.04 1.15 4.57 -51.93 -0.24 0.92 16 5 C -0.54 -14.11 7.22 -34.44 -0.25 -14.36 16 6 H 0.05 1.40 7.55 -52.49 -0.40 1.00 16 7 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 8 N -0.88 -24.70 11.31 55.43 0.63 -24.07 16 9 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.65 -13.28 5.71 -94.25 -0.54 -13.82 16 14 C 0.08 1.42 2.60 -131.60 -0.34 1.08 16 15 C -0.07 -1.03 3.77 -89.81 -0.34 -1.37 16 16 C -0.12 -1.73 7.64 -25.92 -0.20 -1.93 16 17 C -0.14 -1.79 8.08 -25.92 -0.21 -2.00 16 18 C -0.13 -1.91 7.44 -25.92 -0.19 -2.10 16 19 C -0.22 -4.33 9.33 -26.69 -0.25 -4.58 16 20 C -0.18 -3.30 9.47 -26.69 -0.25 -3.56 16 21 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 22 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.05 0.96 7.81 -51.93 -0.41 0.55 16 24 H 0.09 2.34 6.03 -51.93 -0.31 2.02 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.33 6.83 6.02 -39.29 -0.24 6.59 16 28 H 0.08 1.18 8.12 -51.93 -0.42 0.76 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.40 6.02 -51.93 -0.31 1.09 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.12 2.79 5.73 -51.93 -0.30 2.50 16 37 H 0.10 1.99 6.55 -51.92 -0.34 1.65 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 293.34 15.07 4.42 4.42 Total: -1.00 -26.31 293.34 -8.84 -35.15 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.32 Total: 9.69 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -2.01 Total: -27.38 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.09 Total: -37.88 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.31 -8.84 -35.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697402392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.849 kcal (2) G-P(sol) polarization free energy of solvation -26.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds