Wall clock time and date at job start Mon Mar 30 2020 02:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46747 * 2 1 4 4 H 1.08991 * 109.47399 * 301.54451 * 3 2 1 5 5 C 1.50706 * 109.46812 * 181.54329 * 3 2 1 6 6 H 1.07999 * 119.99947 * 240.00111 * 5 3 2 7 7 C 1.37882 * 119.99922 * 60.00619 * 5 3 2 8 8 N 1.31518 * 119.99851 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00065 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47309 * 59.99438 * 9 7 5 11 11 H 1.48498 * 109.47358 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46926 * 299.99733 * 9 7 5 13 13 N 1.46900 * 109.47017 * 61.54888 * 3 2 1 14 14 C 1.46898 * 110.99808 * 217.15665 * 13 3 2 15 15 C 1.53001 * 115.55103 * 185.45492 * 14 13 3 16 16 C 1.53779 * 113.69037 * 295.34997 * 15 14 13 17 17 C 1.53781 * 87.07953 * 139.99084 * 16 15 14 18 18 C 1.53784 * 113.61075 * 32.88694 * 15 14 13 19 19 C 1.52999 * 117.49786 * 331.12165 * 14 13 3 20 20 C 1.52998 * 117.50213 * 39.78183 * 14 13 3 21 21 H 1.09000 * 109.47501 * 54.75017 * 1 2 3 22 22 H 1.09010 * 109.46895 * 174.74273 * 1 2 3 23 23 H 1.08995 * 109.47359 * 294.74508 * 1 2 3 24 24 H 1.09001 * 109.46832 * 240.00336 * 2 1 3 25 25 H 1.08996 * 109.47158 * 120.00453 * 2 1 3 26 26 H 0.96996 * 119.99964 * 180.02562 * 8 7 5 27 27 H 1.00900 * 111.00036 * 93.19972 * 13 3 2 28 28 H 1.09002 * 112.84987 * 164.07799 * 15 14 13 29 29 H 1.08997 * 113.61636 * 254.53958 * 16 15 14 30 30 H 1.09006 * 113.61017 * 25.44983 * 16 15 14 31 31 H 1.09006 * 113.61620 * 220.01976 * 17 16 15 32 32 H 1.09002 * 113.61426 * 89.11961 * 17 16 15 33 33 H 1.08994 * 113.61446 * 334.48365 * 18 15 14 34 34 H 1.09003 * 113.61228 * 105.39165 * 18 15 14 35 35 H 1.08998 * 117.50112 * 215.00261 * 19 14 13 36 36 H 1.09001 * 117.50010 * 0.02989 * 19 14 13 37 37 H 1.09007 * 117.49356 * 359.97438 * 20 14 13 38 38 H 1.09000 * 117.50296 * 144.97022 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6541 1.9643 -0.8757 5 6 3.5464 1.4427 -0.0383 6 1 4.1069 1.9031 0.7619 7 6 4.2093 0.8552 -1.0949 8 7 3.5268 0.2942 -2.0692 9 14 6.0767 0.8548 -1.1421 10 1 6.6018 0.1435 0.0510 11 1 6.5407 0.1654 -2.3728 12 1 6.5721 2.2547 -1.1416 13 7 1.5810 2.1241 1.2177 14 6 1.2369 3.5248 0.9391 15 6 0.8696 4.3696 2.1607 16 6 -0.4131 3.9048 2.8703 17 6 0.3093 4.1952 4.1965 18 6 1.6274 3.9687 3.4374 19 6 1.9790 4.2206 -0.2037 20 6 0.5097 3.8262 -0.3728 21 1 -0.3634 0.5931 -0.8392 22 1 -0.3633 -1.0234 -0.0942 23 1 -0.3634 0.4301 0.9332 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9931 -0.1195 -2.8123 27 1 2.2720 2.0602 1.9501 28 1 0.8926 5.4402 1.9573 29 1 -1.2712 4.5521 2.6897 30 1 -0.6382 2.8491 2.7180 31 1 0.1177 3.4516 4.9701 32 1 0.1790 5.2182 4.5497 33 1 1.9599 2.9307 3.4399 34 1 2.4165 4.6678 3.7144 35 1 2.2055 5.2802 -0.0853 36 1 2.7221 3.6389 -0.7491 37 1 0.2869 2.9851 -1.0294 38 1 -0.2309 4.6260 -0.3656 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697402392.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:52 Heat of formation + Delta-G solvation = 24.995862 kcal Electronic energy + Delta-G solvation = -16288.524373 eV Core-core repulsion = 13938.495120 eV Total energy + Delta-G solvation = -2350.029253 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69024 -38.07798 -35.75324 -33.62387 -31.48164 -28.40943 -26.65308 -26.33776 -24.58510 -23.05490 -21.69118 -20.73145 -19.53539 -18.69751 -16.97293 -16.83984 -16.36468 -15.66255 -15.06050 -14.58368 -14.34673 -14.03954 -13.51597 -13.31470 -13.15557 -13.06773 -12.95582 -12.66260 -12.50139 -12.25775 -12.17059 -11.83154 -11.63628 -11.44936 -11.36028 -11.16252 -10.99963 -10.62296 -10.55852 -10.34522 -8.77777 -8.03395 -6.22740 1.38049 1.38843 1.45787 2.40296 3.03914 3.15977 3.64726 3.85764 3.91721 3.97483 4.15835 4.31199 4.36585 4.55195 4.64268 4.76916 4.83076 4.87433 4.94922 4.98760 5.06613 5.10529 5.20511 5.23599 5.29096 5.29985 5.44364 5.49016 5.52981 5.56214 5.68684 5.78667 5.84452 6.14282 6.23839 6.46247 6.88944 7.08008 7.46478 8.93016 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028784 B = 0.009110 C = 0.008232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.522745 B = 3072.651449 C = 3400.381692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.021 0.979 5 C -0.544 4.544 6 H 0.047 0.953 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.641 5.641 14 C 0.080 3.920 15 C -0.069 4.069 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.139 4.139 19 C -0.231 4.231 20 C -0.172 4.172 21 H 0.029 0.971 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.023 0.977 26 H 0.260 0.740 27 H 0.331 0.669 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.899 7.371 8.589 12.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.105 3.895 4 H 0.039 0.961 5 C -0.583 4.583 6 H 0.066 0.934 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.271 5.271 14 C -0.013 4.013 15 C -0.088 4.088 16 C -0.160 4.160 17 C -0.166 4.166 18 C -0.177 4.177 19 C -0.270 4.270 20 C -0.209 4.209 21 H 0.048 0.952 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.151 0.849 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.526 7.014 8.379 12.728 hybrid contribution 2.195 0.013 -0.871 2.362 sum -4.330 7.027 7.508 11.158 Atomic orbital electron populations 1.21529 0.96513 0.99263 1.00581 1.21385 0.94230 0.98901 0.99664 1.19100 0.91243 0.91060 0.88063 0.96146 1.22038 0.93708 1.36293 1.06307 0.93450 1.25599 1.01851 0.95051 0.95473 1.70000 1.36415 1.38123 1.10534 0.85816 0.81624 0.78073 0.77326 1.19849 1.21135 1.20148 1.60585 1.46215 1.10101 1.10153 1.21531 1.01139 0.89310 0.89366 1.22101 0.98064 0.97765 0.90887 1.22784 0.96002 1.01537 0.95656 1.22762 0.95294 1.02232 0.96321 1.22920 0.97408 1.01538 0.95808 1.23636 0.95342 1.00848 1.07190 1.23054 0.94918 1.02557 1.00389 0.95206 0.94031 0.92383 0.92405 0.95809 0.93070 0.84890 0.88331 0.90982 0.90846 0.91179 0.88939 0.90820 0.91469 0.88724 0.90487 0.91211 0.87310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.70 71.98 0.70 -4.28 16 2 C -0.10 -5.02 5.43 30.59 0.17 -4.85 16 3 C 0.21 10.49 1.37 44.17 0.06 10.55 16 4 H 0.02 1.12 4.57 -2.39 -0.01 1.11 16 5 C -0.54 -29.22 7.22 25.60 0.18 -29.04 16 6 H 0.05 2.54 7.55 -2.91 -0.02 2.51 16 7 C 0.02 1.10 5.30 84.66 0.45 1.55 16 8 N -0.91 -52.32 11.31 21.45 0.24 -52.08 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.64 -26.29 5.71 -452.10 -2.58 -28.87 16 14 C 0.08 2.86 2.60 3.53 0.01 2.87 16 15 C -0.07 -1.93 3.77 -10.27 -0.04 -1.97 16 16 C -0.12 -3.03 7.64 31.12 0.24 -2.79 16 17 C -0.13 -2.73 8.08 31.12 0.25 -2.48 16 18 C -0.14 -3.62 7.44 31.12 0.23 -3.39 16 19 C -0.23 -9.03 9.33 30.62 0.29 -8.74 16 20 C -0.17 -6.27 9.47 30.62 0.29 -5.98 16 21 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 22 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 23 H 0.06 2.24 7.81 -2.39 -0.02 2.23 16 24 H 0.06 3.17 6.03 -2.39 -0.01 3.16 16 25 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.33 13.67 6.02 -89.69 -0.54 13.13 16 28 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 29 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.07 2.12 8.10 -2.38 -0.02 2.10 16 31 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.07 2.18 6.02 -2.39 -0.01 2.16 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 36 H 0.08 3.72 5.73 -2.39 -0.01 3.71 16 37 H 0.07 2.94 6.55 -2.38 -0.02 2.92 16 38 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 Total: -1.00 -57.14 293.34 3.00 -54.14 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 0.49 Total: 29.58 kcal Atomic # 6 Polarization: -51.39 SS G_CDS: 2.83 Total: -48.57 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.34 Total: -80.95 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -57.14 3.00 -54.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697402392.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.138 kcal (2) G-P(sol) polarization free energy of solvation -57.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds