Wall clock time and date at job start Mon Mar 30 2020 02:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 N 1.46495 * 109.47440 * 120.00349 * 2 1 3 5 5 C 1.36940 * 120.00586 * 114.38653 * 4 2 1 6 6 H 1.07999 * 120.00169 * 211.02581 * 5 4 2 7 7 C 1.38809 * 119.99767 * 31.01413 * 5 4 2 8 8 N 1.31629 * 119.99958 * 25.37442 * 7 5 4 9 9 Si 1.86798 * 120.00196 * 205.36643 * 7 5 4 10 10 H 1.48498 * 109.47426 * 270.00392 * 9 7 5 11 11 H 1.48504 * 109.47000 * 30.00892 * 9 7 5 12 12 H 1.48506 * 109.46792 * 150.00100 * 9 7 5 13 13 C 1.46508 * 119.99716 * 294.38374 * 4 2 1 14 14 C 1.52997 * 109.46808 * 93.04218 * 13 4 2 15 15 H 1.09000 * 110.67478 * 309.90602 * 14 13 4 16 16 C 1.54894 * 110.75721 * 186.67628 * 14 13 4 17 17 C 1.54264 * 104.19874 * 203.74162 * 16 14 13 18 18 H 1.08996 * 117.41298 * 163.58788 * 17 16 14 19 19 C 1.52996 * 118.19876 * 318.21826 * 17 16 14 20 20 C 1.53882 * 106.59794 * 23.60854 * 17 16 14 21 21 H 1.09001 * 121.33131 * 138.63282 * 20 17 16 22 22 C 1.54467 * 106.68238 * 359.84180 * 20 17 16 23 23 H 1.09007 * 109.46699 * 299.99657 * 1 2 3 24 24 H 1.09000 * 109.47178 * 59.99634 * 1 2 3 25 25 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47293 * 239.99979 * 2 1 3 27 27 H 1.09000 * 109.47334 * 177.90538 * 3 2 1 28 28 H 1.09004 * 109.47625 * 297.90747 * 3 2 1 29 29 H 1.08998 * 109.47595 * 57.90795 * 3 2 1 30 30 H 0.97000 * 119.99563 * 6.10691 * 8 7 5 31 31 H 1.09007 * 109.46944 * 213.03695 * 13 4 2 32 32 H 1.08999 * 109.47167 * 333.04277 * 13 4 2 33 33 H 1.09008 * 110.48096 * 322.42100 * 16 14 13 34 34 H 1.08999 * 110.48480 * 85.05878 * 16 14 13 35 35 H 1.08994 * 117.46245 * 201.21359 * 19 17 16 36 36 H 1.09007 * 117.46193 * 346.04038 * 19 17 16 37 37 H 1.08999 * 110.65505 * 217.94729 * 22 20 17 38 38 H 1.08995 * 110.40499 * 95.24543 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7083 -1.8672 1.0737 6 1 2.6418 -2.6154 1.8497 7 6 3.4930 -2.0982 -0.0478 8 7 3.9851 -1.0838 -0.7270 9 14 3.8507 -3.8487 -0.5929 10 1 5.0909 -4.3292 0.0675 11 1 2.7153 -4.7273 -0.2131 12 1 4.0301 -3.8812 -2.0668 13 6 1.7687 -0.1225 2.5232 14 6 0.4819 -0.7173 3.0987 15 1 -0.3312 -0.6469 2.3762 16 6 0.0990 -0.0167 4.4260 17 6 -0.7736 -1.0536 5.1631 18 1 -0.9379 -0.9033 6.2301 19 6 -1.8040 -1.8399 4.3503 20 6 -0.3884 -2.4326 4.5992 21 1 -0.2780 -3.3002 5.2497 22 6 0.7034 -2.1870 3.5344 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1294 1.4427 0.0376 28 1 1.7077 1.9454 -0.9082 29 1 1.6464 1.9671 0.8706 30 1 3.8746 -0.1790 -0.3955 31 1 2.6044 -0.3581 3.1824 32 1 1.6641 0.9594 2.4415 33 1 0.9919 0.2130 5.0075 34 1 -0.4720 0.8904 4.2276 35 1 -2.6349 -2.2903 4.8932 36 1 -2.0386 -1.4763 3.3498 37 1 0.5724 -2.8600 2.6871 38 1 1.6945 -2.3103 3.9710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698063285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:22 Heat of formation + Delta-G solvation = 31.734916 kcal Electronic energy + Delta-G solvation = -16394.100941 eV Core-core repulsion = 14044.363915 eV Total energy + Delta-G solvation = -2349.737026 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.27502 -36.68967 -32.23837 -31.78122 -29.15589 -27.72774 -26.39221 -25.31660 -22.98689 -21.72433 -19.53599 -19.09561 -18.60318 -17.33713 -15.54942 -14.88949 -14.36555 -13.71470 -13.59341 -13.22310 -12.77689 -12.72769 -12.45268 -11.90564 -11.77220 -11.43030 -11.32459 -10.99823 -10.78732 -10.70630 -10.58105 -10.15146 -10.10958 -10.03825 -9.77721 -9.66367 -9.55522 -9.17176 -9.13669 -8.24074 -6.72712 -5.95486 -3.17434 3.53386 3.57732 3.72569 3.94415 4.64843 4.82993 4.99042 5.20318 5.26648 5.47244 5.53981 5.61453 5.88509 5.91703 5.94911 5.99833 6.06337 6.20283 6.23664 6.30991 6.37453 6.39318 6.43382 6.47691 6.58044 6.66375 6.67769 6.75040 6.78062 6.84085 6.95196 7.16509 7.32955 7.42443 8.17582 8.72096 9.27042 9.95916 10.40718 11.30180 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.009938 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.218185 B = 2816.908013 C = 3426.983269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 C -0.157 4.157 4 N -0.589 5.589 5 C -0.343 4.343 6 H 0.057 0.943 7 C -0.025 4.025 8 N -0.918 5.918 9 Si 1.059 2.941 10 H -0.296 1.296 11 H -0.293 1.293 12 H -0.288 1.288 13 C 0.156 3.844 14 C -0.113 4.113 15 H 0.074 0.926 16 C -0.092 4.092 17 C -0.169 4.169 18 H 0.098 0.902 19 C -0.161 4.161 20 C -0.167 4.167 21 H 0.101 0.899 22 C -0.074 4.074 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.048 0.952 26 H 0.091 0.909 27 H 0.056 0.944 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.273 0.727 31 H 0.042 0.958 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.348 1.420 7.468 11.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.050 3.950 3 C -0.216 4.216 4 N -0.310 5.310 5 C -0.473 4.473 6 H 0.075 0.925 7 C -0.227 4.227 8 N -0.560 5.560 9 Si 0.889 3.111 10 H -0.223 1.223 11 H -0.220 1.220 12 H -0.214 1.214 13 C 0.029 3.971 14 C -0.134 4.134 15 H 0.092 0.908 16 C -0.130 4.130 17 C -0.187 4.187 18 H 0.116 0.884 19 C -0.198 4.198 20 C -0.185 4.185 21 H 0.119 0.881 22 C -0.111 4.111 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.578 0.488 6.276 9.851 hybrid contribution -0.820 0.853 1.415 1.845 sum -8.398 1.341 7.692 11.466 Atomic orbital electron populations 1.22373 0.99578 1.00537 0.99222 1.20460 0.90427 0.91308 0.92789 1.22240 1.01573 0.98601 0.99146 1.43940 1.62823 1.25144 0.99096 1.19967 1.24414 0.93474 1.09425 0.92543 1.25746 0.94353 1.05063 0.97500 1.70747 1.41020 1.00811 1.43391 0.83641 0.75580 0.75469 0.76410 1.22348 1.21955 1.21352 1.20752 0.93539 0.94816 0.87985 1.22924 1.00611 0.94963 0.94930 0.90796 1.21973 0.97700 0.96721 0.96641 1.23119 1.02351 0.94864 0.98337 0.88364 1.23212 0.91842 1.03486 1.01244 1.23738 0.95751 0.96514 1.02520 0.88093 1.21882 0.95807 0.97062 0.96389 0.93986 0.94484 0.93287 0.89129 0.92510 0.94112 0.94345 0.91454 0.93929 0.94644 0.91461 0.92451 0.89211 0.89043 0.91062 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 8.34 37.16 0.31 -2.79 16 2 C 0.16 3.58 2.26 -67.94 -0.15 3.43 16 3 C -0.16 -3.23 8.75 37.16 0.32 -2.90 16 4 N -0.59 -14.12 2.22 -165.66 -0.37 -14.49 16 5 C -0.34 -9.24 8.96 -15.06 -0.13 -9.38 16 6 H 0.06 1.53 6.62 -52.49 -0.35 1.18 16 7 C -0.02 -0.69 4.67 -17.43 -0.08 -0.77 16 8 N -0.92 -27.07 12.27 55.49 0.68 -26.39 16 9 Si 1.06 25.29 29.99 -169.99 -5.10 20.19 16 10 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 C 0.16 3.22 4.68 -4.04 -0.02 3.20 16 14 C -0.11 -2.03 2.39 -88.63 -0.21 -2.24 16 15 H 0.07 1.39 5.03 -51.93 -0.26 1.13 16 16 C -0.09 -1.40 6.21 -25.07 -0.16 -1.55 16 17 C -0.17 -2.37 6.97 -89.50 -0.62 -2.99 16 18 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.16 -2.22 9.94 -25.42 -0.25 -2.47 16 20 C -0.17 -2.53 7.16 -88.08 -0.63 -3.16 16 21 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 22 C -0.07 -1.34 4.84 -24.97 -0.12 -1.46 16 23 H 0.04 0.77 6.43 -51.93 -0.33 0.44 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.09 2.40 5.84 -51.93 -0.30 2.10 16 27 H 0.06 1.28 6.53 -51.93 -0.34 0.94 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.72 6.58 -51.93 -0.34 0.38 16 30 H 0.27 7.96 5.27 -40.82 -0.22 7.75 16 31 H 0.04 0.93 7.88 -51.92 -0.41 0.52 16 32 H 0.04 0.70 6.18 -51.93 -0.32 0.38 16 33 H 0.07 0.99 8.05 -51.92 -0.42 0.58 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.34 7.27 -51.92 -0.38 0.96 16 37 H 0.07 1.45 7.78 -51.93 -0.40 1.04 16 38 H 0.07 1.27 7.85 -51.93 -0.41 0.86 16 LS Contribution 285.27 15.07 4.30 4.30 Total: -1.00 -28.22 285.27 -8.47 -36.69 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.23 Total: 2.79 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -1.75 Total: -23.09 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.31 Total: -40.88 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.22 -8.47 -36.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698063285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.428 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds