Wall clock time and date at job start Mon Mar 30 2020 02:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47225 * 2 1 4 4 N 1.46495 * 109.47440 * 120.00349 * 2 1 3 5 5 C 1.36940 * 120.00586 * 114.38653 * 4 2 1 6 6 H 1.07999 * 120.00169 * 211.02581 * 5 4 2 7 7 C 1.38809 * 119.99767 * 31.01413 * 5 4 2 8 8 N 1.31629 * 119.99958 * 25.37442 * 7 5 4 9 9 Si 1.86798 * 120.00196 * 205.36643 * 7 5 4 10 10 H 1.48498 * 109.47426 * 270.00392 * 9 7 5 11 11 H 1.48504 * 109.47000 * 30.00892 * 9 7 5 12 12 H 1.48506 * 109.46792 * 150.00100 * 9 7 5 13 13 C 1.46508 * 119.99716 * 294.38374 * 4 2 1 14 14 C 1.52997 * 109.46808 * 93.04218 * 13 4 2 15 15 H 1.09000 * 110.67478 * 309.90602 * 14 13 4 16 16 C 1.54894 * 110.75721 * 186.67628 * 14 13 4 17 17 C 1.54264 * 104.19874 * 203.74162 * 16 14 13 18 18 H 1.08996 * 117.41298 * 163.58788 * 17 16 14 19 19 C 1.52996 * 118.19876 * 318.21826 * 17 16 14 20 20 C 1.53882 * 106.59794 * 23.60854 * 17 16 14 21 21 H 1.09001 * 121.33131 * 138.63282 * 20 17 16 22 22 C 1.54467 * 106.68238 * 359.84180 * 20 17 16 23 23 H 1.09007 * 109.46699 * 299.99657 * 1 2 3 24 24 H 1.09000 * 109.47178 * 59.99634 * 1 2 3 25 25 H 1.08998 * 109.47155 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47293 * 239.99979 * 2 1 3 27 27 H 1.09000 * 109.47334 * 177.90538 * 3 2 1 28 28 H 1.09004 * 109.47625 * 297.90747 * 3 2 1 29 29 H 1.08998 * 109.47595 * 57.90795 * 3 2 1 30 30 H 0.97000 * 119.99563 * 6.10691 * 8 7 5 31 31 H 1.09007 * 109.46944 * 213.03695 * 13 4 2 32 32 H 1.08999 * 109.47167 * 333.04277 * 13 4 2 33 33 H 1.09008 * 110.48096 * 322.42100 * 16 14 13 34 34 H 1.08999 * 110.48480 * 85.05878 * 16 14 13 35 35 H 1.08994 * 117.46245 * 201.21359 * 19 17 16 36 36 H 1.09007 * 117.46193 * 346.04038 * 19 17 16 37 37 H 1.08999 * 110.65505 * 217.94729 * 22 20 17 38 38 H 1.08995 * 110.40499 * 95.24543 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.7083 -1.8672 1.0737 6 1 2.6418 -2.6154 1.8497 7 6 3.4930 -2.0982 -0.0478 8 7 3.9851 -1.0838 -0.7270 9 14 3.8507 -3.8487 -0.5929 10 1 5.0909 -4.3292 0.0675 11 1 2.7153 -4.7273 -0.2131 12 1 4.0301 -3.8812 -2.0668 13 6 1.7687 -0.1225 2.5232 14 6 0.4819 -0.7173 3.0987 15 1 -0.3312 -0.6469 2.3762 16 6 0.0990 -0.0167 4.4260 17 6 -0.7736 -1.0536 5.1631 18 1 -0.9379 -0.9033 6.2301 19 6 -1.8040 -1.8399 4.3503 20 6 -0.3884 -2.4326 4.5992 21 1 -0.2780 -3.3002 5.2497 22 6 0.7034 -2.1870 3.5344 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1294 1.4427 0.0376 28 1 1.7077 1.9454 -0.9082 29 1 1.6464 1.9671 0.8706 30 1 3.8746 -0.1790 -0.3955 31 1 2.6044 -0.3581 3.1824 32 1 1.6641 0.9594 2.4415 33 1 0.9919 0.2130 5.0075 34 1 -0.4720 0.8904 4.2276 35 1 -2.6349 -2.2903 4.8932 36 1 -2.0386 -1.4763 3.3498 37 1 0.5724 -2.8600 2.6871 38 1 1.6945 -2.3103 3.9710 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698063285.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:21 Heat of formation + Delta-G solvation = 18.152360 kcal Electronic energy + Delta-G solvation = -16394.689925 eV Core-core repulsion = 14044.363915 eV Total energy + Delta-G solvation = -2350.326010 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59703 -38.44732 -33.99271 -33.54513 -30.86944 -29.06072 -28.05664 -26.99215 -24.84402 -23.11205 -21.20591 -20.38228 -20.05586 -19.26542 -16.77727 -16.64718 -16.11446 -15.56148 -15.35820 -14.58905 -14.44462 -14.26114 -13.89339 -13.51840 -13.32690 -13.12194 -12.82120 -12.63944 -12.39964 -12.19958 -12.16253 -11.93596 -11.80523 -11.73113 -11.47541 -11.16548 -11.01843 -10.84993 -10.40459 -10.29117 -8.73428 -8.08514 -5.29854 1.57644 1.64943 1.81941 2.69246 2.80962 3.28770 3.55216 3.63784 3.84837 4.02920 4.15697 4.27219 4.33265 4.49237 4.62601 4.64489 4.65289 4.74213 4.81318 4.83099 4.85066 4.97400 4.99920 5.01709 5.06125 5.12367 5.18703 5.23039 5.29854 5.41276 5.46842 5.53508 5.65200 5.66726 6.03817 6.59093 7.25980 7.94041 8.36973 9.13757 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026834 B = 0.009938 C = 0.008168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.218185 B = 2816.908013 C = 3426.983269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.152 3.848 3 C -0.145 4.145 4 N -0.603 5.603 5 C -0.339 4.339 6 H 0.048 0.952 7 C -0.076 4.076 8 N -0.948 5.948 9 Si 1.103 2.897 10 H -0.287 1.287 11 H -0.281 1.281 12 H -0.292 1.292 13 C 0.157 3.843 14 C -0.106 4.106 15 H 0.068 0.932 16 C -0.089 4.089 17 C -0.156 4.156 18 H 0.124 0.876 19 C -0.151 4.151 20 C -0.183 4.183 21 H 0.114 0.886 22 C -0.073 4.073 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.029 0.971 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.264 0.736 31 H 0.024 0.976 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 1.835 8.905 13.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.046 3.954 3 C -0.204 4.204 4 N -0.325 5.325 5 C -0.469 4.469 6 H 0.066 0.934 7 C -0.273 4.273 8 N -0.591 5.591 9 Si 0.929 3.071 10 H -0.214 1.214 11 H -0.207 1.207 12 H -0.219 1.219 13 C 0.031 3.969 14 C -0.127 4.127 15 H 0.086 0.914 16 C -0.126 4.126 17 C -0.174 4.174 18 H 0.142 0.858 19 C -0.188 4.188 20 C -0.201 4.201 21 H 0.132 0.868 22 C -0.110 4.110 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.545 0.914 7.740 12.323 hybrid contribution -0.224 0.760 0.994 1.271 sum -9.769 1.674 8.734 13.210 Atomic orbital electron populations 1.22185 0.96808 1.00230 1.01046 1.20466 0.92453 0.91809 0.90693 1.22095 0.99729 0.97538 1.01049 1.44116 1.62889 1.24792 1.00706 1.20132 1.23526 0.94390 1.08901 0.93423 1.26861 0.94754 1.07435 0.98233 1.70827 1.43224 1.00812 1.44282 0.83021 0.76090 0.72266 0.75683 1.21413 1.20677 1.21853 1.20831 0.94324 0.95501 0.86215 1.22719 0.98582 0.95035 0.96337 0.91409 1.21939 0.98440 0.97421 0.94848 1.23197 1.01610 0.93054 0.99561 0.85809 1.23320 0.91721 1.02611 1.01125 1.23650 0.96053 0.98178 1.02226 0.86784 1.21726 0.96388 0.96671 0.96240 0.92427 0.92249 0.94683 0.93216 0.95226 0.92068 0.92431 0.92434 0.95756 0.93455 0.91120 0.90867 0.86525 0.90056 0.94290 0.93268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.45 8.34 71.98 0.60 -4.85 16 2 C 0.15 6.98 2.26 44.99 0.10 7.08 16 3 C -0.15 -5.89 8.75 71.98 0.63 -5.26 16 4 N -0.60 -29.37 2.22 -678.03 -1.50 -30.88 16 5 C -0.34 -18.75 8.96 84.03 0.75 -18.00 16 6 H 0.05 2.67 6.62 -2.91 -0.02 2.65 16 7 C -0.08 -4.34 4.67 84.86 0.40 -3.95 16 8 N -0.95 -57.57 12.27 21.65 0.27 -57.31 16 9 Si 1.10 52.23 29.99 68.60 2.06 54.29 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 13 C 0.16 6.46 4.68 86.38 0.40 6.87 16 14 C -0.11 -3.69 2.39 -9.50 -0.02 -3.72 16 15 H 0.07 2.46 5.03 -2.39 -0.01 2.45 16 16 C -0.09 -2.43 6.21 31.67 0.20 -2.23 16 17 C -0.16 -3.83 6.97 -10.07 -0.07 -3.90 16 18 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 19 C -0.15 -3.66 9.94 31.44 0.31 -3.35 16 20 C -0.18 -5.17 7.16 -9.15 -0.07 -5.24 16 21 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16 22 C -0.07 -2.64 4.84 31.74 0.15 -2.48 16 23 H 0.06 1.99 6.43 -2.38 -0.02 1.97 16 24 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 2.71 5.84 -2.39 -0.01 2.69 16 27 H 0.03 1.34 6.53 -2.39 -0.02 1.32 16 28 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.06 2.07 6.58 -2.39 -0.02 2.06 16 30 H 0.26 15.98 5.27 -92.71 -0.49 15.49 16 31 H 0.02 1.07 7.88 -2.38 -0.02 1.05 16 32 H 0.05 1.82 6.18 -2.39 -0.01 1.80 16 33 H 0.07 1.91 8.05 -2.38 -0.02 1.89 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.08 2.16 7.27 -2.38 -0.02 2.14 16 37 H 0.04 1.62 7.78 -2.39 -0.02 1.60 16 38 H 0.05 1.91 7.85 -2.39 -0.02 1.89 16 Total: -1.00 -62.05 285.27 5.51 -56.55 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: 1.30 Total: 16.38 kcal Atomic # 6 Polarization: -42.42 SS G_CDS: 3.39 Total: -39.03 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -1.24 Total: -88.18 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.06 Total: 54.29 kcal Total: -62.05 5.51 -56.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698063285.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.699 kcal (2) G-P(sol) polarization free energy of solvation -62.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds