Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47120 * 2 1 4 4 H 1.09004 * 109.47028 * 305.79093 * 3 2 1 5 5 C 1.50696 * 109.47153 * 185.79056 * 3 2 1 6 6 H 1.08004 * 120.00006 * 245.50322 * 5 3 2 7 7 C 1.37878 * 119.99873 * 65.22613 * 5 3 2 8 8 N 1.31520 * 119.99370 * 193.86513 * 7 5 3 9 9 Si 1.86790 * 120.00222 * 13.86547 * 7 5 3 10 10 H 1.48503 * 109.47168 * 90.31574 * 9 7 5 11 11 H 1.48508 * 109.47282 * 210.31892 * 9 7 5 12 12 H 1.48503 * 109.47105 * 330.31936 * 9 7 5 13 13 N 1.46897 * 109.46633 * 65.78921 * 3 2 1 14 14 C 1.46900 * 111.00327 * 256.53326 * 13 3 2 15 15 C 1.52994 * 109.47644 * 183.86513 * 14 13 3 16 16 H 1.09000 * 115.54993 * 29.32179 * 15 14 13 17 17 C 1.53004 * 117.49786 * 243.62359 * 15 14 13 18 18 C 1.52999 * 117.50114 * 175.00224 * 15 14 13 19 19 H 1.09007 * 117.49685 * 214.99633 * 18 15 14 20 20 C 1.52994 * 117.49946 * 359.97438 * 18 15 14 21 21 C 1.53001 * 117.49979 * 248.74840 * 20 18 15 22 22 C 1.53006 * 117.50103 * 180.09263 * 20 18 15 23 23 H 1.09000 * 109.46875 * 174.78744 * 1 2 3 24 24 H 1.08997 * 109.46767 * 294.78849 * 1 2 3 25 25 H 1.08995 * 109.46818 * 54.78309 * 1 2 3 26 26 H 1.08996 * 109.46846 * 240.00649 * 2 1 3 27 27 H 1.09000 * 109.47146 * 120.00207 * 2 1 3 28 28 H 0.97000 * 119.99395 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99590 * 132.58059 * 13 3 2 30 30 H 1.09006 * 109.46669 * 303.85980 * 14 13 3 31 31 H 1.09001 * 109.47039 * 63.85876 * 14 13 3 32 32 H 1.09000 * 117.49843 * 359.97438 * 17 15 14 33 33 H 1.08994 * 117.50236 * 145.01671 * 17 15 14 34 34 H 1.08996 * 115.55169 * 34.41421 * 20 18 15 35 35 H 1.09007 * 117.49872 * 0.02562 * 21 20 18 36 36 H 1.09006 * 117.50387 * 145.01791 * 21 20 18 37 37 H 1.08997 * 117.49912 * 214.98005 * 22 20 18 38 38 H 1.09000 * 117.49232 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5945 1.9855 -0.8336 5 6 3.5402 1.4450 -0.1433 6 1 4.1594 1.8048 0.6651 7 6 4.1225 0.9825 -1.3044 8 7 5.4122 0.7266 -1.3364 9 14 3.0798 0.7193 -2.8317 10 1 3.0614 1.9655 -3.6392 11 1 3.6554 -0.3857 -3.6397 12 1 1.6936 0.3691 -2.4304 13 7 1.6678 2.0934 1.2632 14 6 0.5290 3.0015 1.0719 15 6 0.2326 3.7312 2.3836 16 1 1.0901 3.8902 3.0373 17 6 -1.1224 3.4721 3.0455 18 6 -0.8491 4.8131 2.3613 19 1 -0.7030 5.6840 3.0005 20 6 -1.5510 5.0829 1.0290 21 6 -1.2753 6.4229 0.3438 22 6 -2.6312 6.1663 1.0062 23 1 -0.3633 -1.0234 -0.0934 24 1 -0.3633 0.4309 0.9330 25 1 -0.3633 0.5926 -0.8396 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.8219 0.4016 -2.1533 29 1 2.4550 2.5803 1.6648 30 1 0.7711 3.7298 0.2978 31 1 -0.3468 2.4274 0.7695 32 1 -1.8027 2.7822 2.5462 33 1 -1.1564 3.4606 4.1348 34 1 -1.6982 4.2120 0.3903 35 1 -0.5934 7.1120 0.8421 36 1 -1.2414 6.4336 -0.7456 37 1 -3.4888 6.0083 0.3523 38 1 -2.8419 6.6865 1.9406 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698889091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 38.484597 kcal Electronic energy + Delta-G solvation = -15506.589077 eV Core-core repulsion = 13157.144739 eV Total energy + Delta-G solvation = -2349.444338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.77665 -36.47658 -35.09257 -32.23395 -31.14458 -27.74636 -24.50091 -23.71723 -22.42836 -22.28318 -21.10281 -19.59774 -19.02375 -16.85873 -15.87291 -15.27681 -15.21891 -13.97488 -13.87472 -13.68591 -13.17005 -12.82929 -12.55985 -12.22433 -11.77537 -11.60517 -11.54382 -11.34472 -11.28926 -10.94055 -10.78752 -10.65982 -10.52017 -10.17877 -9.86136 -9.58370 -9.42951 -9.15091 -9.09473 -8.44566 -7.35536 -6.12327 -4.08369 3.27444 3.36981 3.40705 3.55674 4.24738 4.40968 4.52247 4.79220 4.94210 5.00725 5.19684 5.29012 5.33284 5.37278 5.58764 5.67383 5.74405 5.84490 5.97378 6.03288 6.07535 6.09077 6.11321 6.18577 6.29800 6.32037 6.35439 6.56520 6.70660 6.81185 7.07964 7.11144 7.48992 7.67421 8.03061 8.40589 8.64421 8.96257 9.53597 11.00663 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.006780 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.327121 B = 4129.087234 C = 4296.320588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.109 4.109 3 C 0.191 3.809 4 H 0.004 0.996 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.249 1.249 13 N -0.679 5.679 14 C 0.090 3.910 15 C -0.131 4.131 16 H 0.105 0.895 17 C -0.168 4.168 18 C -0.128 4.128 19 H 0.099 0.901 20 C -0.117 4.117 21 C -0.178 4.178 22 C -0.181 4.181 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.035 0.965 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.264 0.736 29 H 0.338 0.662 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.203 7.433 4.550 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C 0.082 3.918 4 H 0.022 0.978 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.690 3.310 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.310 5.310 14 C -0.040 4.040 15 C -0.150 4.150 16 H 0.123 0.877 17 C -0.205 4.205 18 C -0.147 4.147 19 H 0.117 0.883 20 C -0.136 4.136 21 C -0.215 4.215 22 C -0.218 4.218 23 H 0.053 0.947 24 H 0.074 0.926 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.156 0.844 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.435 6.828 4.641 16.630 hybrid contribution 0.064 0.573 -1.401 1.515 sum -14.372 7.401 3.240 16.487 Atomic orbital electron populations 1.21856 0.98712 0.99309 1.00581 1.21870 0.92667 0.99434 1.00781 1.19459 0.95325 0.90814 0.86224 0.97840 1.21290 0.89552 1.43681 1.02530 0.90661 1.24911 0.94761 0.94130 0.98802 1.69976 1.11077 1.44100 1.27809 0.87215 0.82402 0.77936 0.83437 1.20799 1.21354 1.17282 1.60587 1.09143 1.32754 1.28550 1.21595 0.95886 0.93455 0.93064 1.22429 0.92602 1.00162 0.99767 0.87739 1.23020 0.99867 0.98343 0.99277 1.21811 1.03099 0.93121 0.96625 0.88298 1.21700 1.01484 0.93204 0.97163 1.22928 0.99054 0.99672 0.99826 1.22930 0.92646 1.03653 1.02607 0.94743 0.92616 0.94552 0.93156 0.92326 0.92672 0.84375 0.95564 0.91667 0.88925 0.89194 0.87722 0.88848 0.88900 0.89084 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.88 37.16 0.33 -2.44 16 2 C -0.11 -2.44 4.87 -26.72 -0.13 -2.57 16 3 C 0.19 4.50 1.74 -68.86 -0.12 4.38 16 4 H 0.00 0.10 6.24 -51.93 -0.32 -0.23 16 5 C -0.53 -14.82 9.02 -34.44 -0.31 -15.13 16 6 H 0.08 2.26 7.67 -52.48 -0.40 1.85 16 7 C 0.08 2.20 5.35 -17.82 -0.10 2.11 16 8 N -0.89 -27.13 13.96 55.43 0.77 -26.36 16 9 Si 0.86 21.28 25.79 -169.99 -4.38 16.90 16 10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.25 -5.80 5.42 56.52 0.31 -5.49 16 13 N -0.68 -13.88 6.12 -107.95 -0.66 -14.54 16 14 C 0.09 1.55 4.25 -3.83 -0.02 1.53 16 15 C -0.13 -1.88 5.93 -90.62 -0.54 -2.42 16 16 H 0.10 1.50 8.07 -51.93 -0.42 1.08 16 17 C -0.17 -2.09 9.90 -26.73 -0.26 -2.36 16 18 C -0.13 -1.57 5.85 -90.62 -0.53 -2.10 16 19 H 0.10 1.12 8.14 -51.92 -0.42 0.70 16 20 C -0.12 -1.41 5.09 -90.62 -0.46 -1.87 16 21 C -0.18 -1.97 10.25 -26.70 -0.27 -2.25 16 22 C -0.18 -1.83 10.25 -26.69 -0.27 -2.11 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 1.00 6.76 -51.93 -0.35 0.65 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.18 4.87 -51.93 -0.25 0.93 16 27 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H 0.34 7.03 7.79 -39.29 -0.31 6.72 16 30 H 0.03 0.48 7.90 -51.93 -0.41 0.07 16 31 H 0.07 1.11 5.74 -51.93 -0.30 0.82 16 32 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.35 7.35 -51.93 -0.38 0.97 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -28.98 298.89 -9.05 -38.02 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.60 Total: 6.70 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.68 Total: -25.22 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.11 Total: -40.91 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.38 Total: 16.90 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.98 -9.05 -38.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698889091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.508 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds