Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53007 * 109.47120 * 2 1 4 4 H 1.09004 * 109.47028 * 305.79093 * 3 2 1 5 5 C 1.50696 * 109.47153 * 185.79056 * 3 2 1 6 6 H 1.08004 * 120.00006 * 245.50322 * 5 3 2 7 7 C 1.37878 * 119.99873 * 65.22613 * 5 3 2 8 8 N 1.31520 * 119.99370 * 193.86513 * 7 5 3 9 9 Si 1.86790 * 120.00222 * 13.86547 * 7 5 3 10 10 H 1.48503 * 109.47168 * 90.31574 * 9 7 5 11 11 H 1.48508 * 109.47282 * 210.31892 * 9 7 5 12 12 H 1.48503 * 109.47105 * 330.31936 * 9 7 5 13 13 N 1.46897 * 109.46633 * 65.78921 * 3 2 1 14 14 C 1.46900 * 111.00327 * 256.53326 * 13 3 2 15 15 C 1.52994 * 109.47644 * 183.86513 * 14 13 3 16 16 H 1.09000 * 115.54993 * 29.32179 * 15 14 13 17 17 C 1.53004 * 117.49786 * 243.62359 * 15 14 13 18 18 C 1.52999 * 117.50114 * 175.00224 * 15 14 13 19 19 H 1.09007 * 117.49685 * 214.99633 * 18 15 14 20 20 C 1.52994 * 117.49946 * 359.97438 * 18 15 14 21 21 C 1.53001 * 117.49979 * 248.74840 * 20 18 15 22 22 C 1.53006 * 117.50103 * 180.09263 * 20 18 15 23 23 H 1.09000 * 109.46875 * 174.78744 * 1 2 3 24 24 H 1.08997 * 109.46767 * 294.78849 * 1 2 3 25 25 H 1.08995 * 109.46818 * 54.78309 * 1 2 3 26 26 H 1.08996 * 109.46846 * 240.00649 * 2 1 3 27 27 H 1.09000 * 109.47146 * 120.00207 * 2 1 3 28 28 H 0.97000 * 119.99395 * 180.02562 * 8 7 5 29 29 H 1.00903 * 110.99590 * 132.58059 * 13 3 2 30 30 H 1.09006 * 109.46669 * 303.85980 * 14 13 3 31 31 H 1.09001 * 109.47039 * 63.85876 * 14 13 3 32 32 H 1.09000 * 117.49843 * 359.97438 * 17 15 14 33 33 H 1.08994 * 117.50236 * 145.01671 * 17 15 14 34 34 H 1.08996 * 115.55169 * 34.41421 * 20 18 15 35 35 H 1.09007 * 117.49872 * 0.02562 * 21 20 18 36 36 H 1.09006 * 117.50387 * 145.01791 * 21 20 18 37 37 H 1.08997 * 117.49912 * 214.98005 * 22 20 18 38 38 H 1.09000 * 117.49232 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5945 1.9855 -0.8336 5 6 3.5402 1.4450 -0.1433 6 1 4.1594 1.8048 0.6651 7 6 4.1225 0.9825 -1.3044 8 7 5.4122 0.7266 -1.3364 9 14 3.0798 0.7193 -2.8317 10 1 3.0614 1.9655 -3.6392 11 1 3.6554 -0.3857 -3.6397 12 1 1.6936 0.3691 -2.4304 13 7 1.6678 2.0934 1.2632 14 6 0.5290 3.0015 1.0719 15 6 0.2326 3.7312 2.3836 16 1 1.0901 3.8902 3.0373 17 6 -1.1224 3.4721 3.0455 18 6 -0.8491 4.8131 2.3613 19 1 -0.7030 5.6840 3.0005 20 6 -1.5510 5.0829 1.0290 21 6 -1.2753 6.4229 0.3438 22 6 -2.6312 6.1663 1.0062 23 1 -0.3633 -1.0234 -0.0934 24 1 -0.3633 0.4309 0.9330 25 1 -0.3633 0.5926 -0.8396 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 5.8219 0.4016 -2.1533 29 1 2.4550 2.5803 1.6648 30 1 0.7711 3.7298 0.2978 31 1 -0.3468 2.4274 0.7695 32 1 -1.8027 2.7822 2.5462 33 1 -1.1564 3.4606 4.1348 34 1 -1.6982 4.2120 0.3903 35 1 -0.5934 7.1120 0.8421 36 1 -1.2414 6.4336 -0.7456 37 1 -3.4888 6.0083 0.3523 38 1 -2.8419 6.6865 1.9406 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698889091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 21.254856 kcal Electronic energy + Delta-G solvation = -15507.336215 eV Core-core repulsion = 13157.144739 eV Total energy + Delta-G solvation = -2350.191475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83680 -38.03094 -36.22876 -34.31948 -32.75332 -29.55964 -26.14676 -24.64658 -24.12886 -23.17401 -22.20184 -21.33762 -20.22364 -18.85728 -17.25072 -16.71868 -16.30736 -15.70325 -15.49270 -14.92957 -14.68368 -14.50008 -13.90906 -13.81239 -13.36651 -13.17282 -12.80755 -12.69298 -12.45314 -12.39509 -12.17460 -12.03557 -11.80369 -11.62827 -11.45140 -11.19543 -11.08557 -10.68396 -10.59518 -10.20239 -9.04026 -8.34173 -6.34737 1.31503 1.35015 1.45815 2.32723 2.61648 3.00626 3.28772 3.54734 3.59419 4.00010 4.02886 4.21207 4.35887 4.39667 4.45341 4.50305 4.50716 4.54260 4.68376 4.81137 4.81687 4.87330 4.94961 4.99525 5.04877 5.19629 5.25978 5.28988 5.30080 5.35700 5.42116 5.44537 5.56494 5.80212 6.02673 6.49623 6.68262 6.87857 7.31714 8.82298 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030683 B = 0.006780 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.327121 B = 4129.087234 C = 4296.320588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.196 3.804 4 H 0.001 0.999 5 C -0.538 4.538 6 H 0.037 0.963 7 C 0.021 3.979 8 N -0.941 5.941 9 Si 0.926 3.074 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.225 1.225 13 N -0.678 5.678 14 C 0.097 3.903 15 C -0.154 4.154 16 H 0.100 0.900 17 C -0.157 4.157 18 C -0.112 4.112 19 H 0.112 0.888 20 C -0.137 4.137 21 C -0.186 4.186 22 C -0.162 4.162 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.041 0.959 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.266 0.734 29 H 0.332 0.668 30 H 0.012 0.988 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.139 7.859 4.485 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.087 3.913 4 H 0.019 0.981 5 C -0.576 4.576 6 H 0.055 0.945 7 C -0.177 4.177 8 N -0.580 5.580 9 Si 0.749 3.251 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.148 1.148 13 N -0.309 5.309 14 C -0.032 4.032 15 C -0.172 4.172 16 H 0.118 0.882 17 C -0.193 4.193 18 C -0.131 4.131 19 H 0.130 0.870 20 C -0.156 4.156 21 C -0.223 4.223 22 C -0.199 4.199 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.398 7.263 4.592 19.405 hybrid contribution 1.031 0.487 -1.293 1.724 sum -16.367 7.751 3.299 18.408 Atomic orbital electron populations 1.21748 0.95412 1.01056 1.01282 1.21790 0.95597 0.97822 0.99676 1.19337 0.92336 0.92178 0.87498 0.98143 1.21607 0.91836 1.42744 1.01451 0.94490 1.25764 0.95888 0.93998 1.02097 1.70109 1.13157 1.45883 1.28835 0.86208 0.81819 0.77931 0.79109 1.20416 1.21073 1.14761 1.60598 1.09726 1.33787 1.26756 1.21559 0.94427 0.92724 0.94512 1.22279 0.93742 1.02445 0.98769 0.88189 1.23092 0.97727 0.98346 1.00181 1.21862 1.00998 0.93291 0.96921 0.86965 1.21712 1.03352 0.93418 0.97081 1.22997 1.00195 0.99099 0.99963 1.23007 0.92242 1.01607 1.03032 0.92466 0.91844 0.93957 0.94304 0.93510 0.92521 0.85042 0.96988 0.91129 0.88811 0.87603 0.88813 0.88646 0.88938 0.87982 0.87798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 8.88 71.98 0.64 -4.12 16 2 C -0.11 -4.81 4.87 30.60 0.15 -4.66 16 3 C 0.20 9.22 1.74 44.17 0.08 9.30 16 4 H 0.00 0.04 6.24 -2.39 -0.01 0.03 16 5 C -0.54 -30.78 9.02 25.60 0.23 -30.55 16 6 H 0.04 2.33 7.67 -2.91 -0.02 2.31 16 7 C 0.02 1.23 5.35 84.65 0.45 1.68 16 8 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 9 Si 0.93 43.87 25.79 68.60 1.77 45.64 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.22 -9.71 5.42 99.48 0.54 -9.17 16 13 N -0.68 -27.73 6.12 -495.45 -3.03 -30.76 16 14 C 0.10 3.26 4.25 86.30 0.37 3.62 16 15 C -0.15 -4.21 5.93 -10.79 -0.06 -4.28 16 16 H 0.10 2.82 8.07 -2.39 -0.02 2.80 16 17 C -0.16 -3.49 9.90 30.60 0.30 -3.19 16 18 C -0.11 -2.50 5.85 -10.80 -0.06 -2.56 16 19 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 20 C -0.14 -3.01 5.09 -10.79 -0.05 -3.06 16 21 C -0.19 -3.76 10.25 30.62 0.31 -3.44 16 22 C -0.16 -2.80 10.25 30.62 0.31 -2.48 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.06 2.09 6.76 -2.39 -0.02 2.07 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.76 4.87 -2.39 -0.01 1.75 16 27 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.33 14.21 7.79 -89.69 -0.70 13.51 16 30 H 0.01 0.44 7.90 -2.38 -0.02 0.42 16 31 H 0.07 2.29 5.74 -2.39 -0.01 2.27 16 32 H 0.09 2.09 8.03 -2.39 -0.02 2.07 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.02 16 34 H 0.09 2.25 7.35 -2.39 -0.02 2.24 16 35 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -62.89 298.89 1.86 -61.03 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.16 Total: 26.39 kcal Atomic # 6 Polarization: -46.41 SS G_CDS: 2.66 Total: -43.74 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -2.73 Total: -89.32 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.77 Total: 45.64 kcal Total: -62.89 1.86 -61.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698889091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.290 kcal (2) G-P(sol) polarization free energy of solvation -62.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds