Wall clock time and date at job start Mon Mar 30 2020 02:38:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52998 * 109.47085 * 2 1
4 4 H 1.08998 * 109.47241 * 304.97875 * 3 2 1
5 5 C 1.50701 * 109.47202 * 184.97636 * 3 2 1
6 6 H 1.07991 * 119.99622 * 245.45950 * 5 3 2
7 7 C 1.37880 * 119.99728 * 65.45457 * 5 3 2
8 8 N 1.31506 * 120.00113 * 0.02562 * 7 5 3
9 9 Si 1.86801 * 119.99570 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47121 * 90.00241 * 9 7 5
11 11 H 1.48503 * 109.46707 * 209.99899 * 9 7 5
12 12 H 1.48497 * 109.47303 * 330.00308 * 9 7 5
13 13 N 1.46902 * 109.46941 * 64.97528 * 3 2 1
14 14 C 1.48564 * 110.99991 * 32.00987 * 13 3 2
15 15 C 1.54384 * 104.59229 * 200.95805 * 14 13 3
16 16 C 1.54259 * 105.06202 * 23.85165 * 15 14 13
17 17 C 1.48556 * 110.99998 * 276.58905 * 13 3 2
18 18 H 1.09000 * 110.51475 * 40.21324 * 17 13 3
19 19 C 1.53005 * 110.41162 * 277.81987 * 17 13 3
20 20 C 1.53000 * 117.49863 * 10.69154 * 19 17 13
21 21 C 1.52998 * 117.49786 * 302.06939 * 19 17 13
22 22 H 1.08997 * 109.47068 * 48.19792 * 1 2 3
23 23 H 1.09008 * 109.46853 * 168.19311 * 1 2 3
24 24 H 1.08999 * 109.47395 * 288.19231 * 1 2 3
25 25 H 1.08996 * 109.47222 * 239.99685 * 2 1 3
26 26 H 1.09002 * 109.46564 * 119.99876 * 2 1 3
27 27 H 0.97000 * 120.00009 * 179.97438 * 8 7 5
28 28 H 1.08993 * 110.40918 * 82.17834 * 14 13 3
29 29 H 1.09001 * 110.50742 * 319.78231 * 14 13 3
30 30 H 1.09002 * 110.32446 * 264.95757 * 15 14 13
31 31 H 1.08993 * 110.32031 * 142.74630 * 15 14 13
32 32 H 1.09000 * 110.32325 * 241.10339 * 16 15 14
33 33 H 1.08997 * 110.41235 * 118.94128 * 16 15 14
34 34 H 1.09000 * 115.56234 * 156.38845 * 19 17 13
35 35 H 1.09001 * 117.49499 * 0.02562 * 20 19 17
36 36 H 1.09002 * 117.49683 * 145.02098 * 20 19 17
37 37 H 1.08999 * 117.50009 * 214.97731 * 21 19 17
38 38 H 1.09001 * 117.49985 * 359.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6057 1.9814 -0.8420
5 6 3.5420 1.4443 -0.1232
6 1 4.1501 1.8086 0.6914
7 6 4.1396 0.9807 -1.2761
8 7 3.3990 0.5374 -2.2682
9 14 6.0014 0.9823 -1.4285
10 1 6.5403 -0.3072 -0.9266
11 1 6.3811 1.1564 -2.8536
12 1 6.5628 2.0990 -0.6266
13 7 1.6509 2.0994 1.2550
14 6 1.6120 1.1253 2.3760
15 6 0.7061 1.7881 3.4360
16 6 -0.1822 2.7711 2.6460
17 6 0.2617 2.6196 1.1751
18 1 -0.3824 1.9107 0.6548
19 6 0.2398 3.9766 0.4686
20 6 1.5227 4.4293 -0.2316
21 6 1.0848 5.1006 1.0716
22 1 -0.3633 0.6850 -0.7661
23 1 -0.3633 -1.0060 -0.2103
24 1 -0.3634 0.3208 0.9763
25 1 1.8934 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 3.8194 0.2116 -3.0794
28 1 2.6131 0.9669 2.7769
29 1 1.1815 0.1799 2.0457
30 1 1.3098 2.3266 4.1666
31 1 0.0913 1.0369 3.9316
32 1 -0.0145 3.7922 2.9888
33 1 -1.2335 2.5042 2.7536
34 1 -0.7090 4.2519 0.0081
35 1 2.3821 3.7601 -0.1893
36 1 1.4178 5.0023 -1.1529
37 1 0.6919 6.1153 1.0077
38 1 1.6559 4.8735 1.9718
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000706661385.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:08
Heat of formation + Delta-G solvation = 41.599074 kcal
Electronic energy + Delta-G solvation = -16750.480195 eV
Core-core repulsion = 14401.170912 eV
Total energy + Delta-G solvation = -2349.309284 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-39.39264 -35.64140 -33.88456 -31.67702 -29.49762 -28.18748 -26.44642 -23.13519
-22.19033 -21.93448 -20.49944 -19.07790 -18.31120 -16.40876 -15.71434 -15.31844
-14.46341 -14.15109 -13.38582 -13.16907 -12.95008 -12.59395 -11.95569 -11.77806
-11.41013 -11.20389 -10.97648 -10.84782 -10.67193 -10.54024 -10.48275 -10.34688
-10.16522 -9.86264 -9.77959 -9.52803 -9.41113 -9.08186 -8.80330 -8.30326
-7.08264 -5.96716 -3.98783 3.33618 3.40603 3.45071 4.45636 4.52892
5.04741 5.29432 5.35709 5.41445 5.60437 5.68102 5.74224 5.84329
5.98289 6.09720 6.12476 6.18006 6.20932 6.32367 6.37314 6.40776
6.49263 6.56260 6.68512 6.72974 6.78870 6.82761 6.86749 7.02420
7.25013 7.39732 7.46490 7.69239 7.91064 8.19190 8.41196 8.63783
9.09273 9.65880 11.10858
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.027255 B = 0.010744 C = 0.009602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.104700 B = 2605.498991 C = 2915.399726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.151 4.151
3 C 0.204 3.796
4 H 0.048 0.952
5 C -0.492 4.492
6 H 0.060 0.940
7 C 0.058 3.942
8 N -0.894 5.894
9 Si 0.891 3.109
10 H -0.283 1.283
11 H -0.288 1.288
12 H -0.274 1.274
13 N -0.491 5.491
14 C 0.024 3.976
15 C -0.126 4.126
16 C -0.116 4.116
17 C 0.068 3.932
18 H 0.069 0.931
19 C -0.146 4.146
20 C -0.166 4.166
21 C -0.177 4.177
22 H 0.047 0.953
23 H 0.032 0.968
24 H 0.045 0.955
25 H 0.087 0.913
26 H 0.046 0.954
27 H 0.259 0.741
28 H 0.069 0.931
29 H 0.059 0.941
30 H 0.060 0.940
31 H 0.054 0.946
32 H 0.066 0.934
33 H 0.053 0.947
34 H 0.088 0.912
35 H 0.136 0.864
36 H 0.072 0.928
37 H 0.073 0.927
38 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.376 2.986 6.574 9.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.191 4.191
3 C 0.097 3.903
4 H 0.065 0.935
5 C -0.531 4.531
6 H 0.078 0.922
7 C -0.142 4.142
8 N -0.533 5.533
9 Si 0.720 3.280
10 H -0.210 1.210
11 H -0.214 1.214
12 H -0.199 1.199
13 N -0.215 5.215
14 C -0.105 4.105
15 C -0.164 4.164
16 C -0.155 4.155
17 C -0.041 4.041
18 H 0.086 0.914
19 C -0.165 4.165
20 C -0.203 4.203
21 C -0.214 4.214
22 H 0.066 0.934
23 H 0.052 0.948
24 H 0.064 0.936
25 H 0.105 0.895
26 H 0.064 0.936
27 H 0.069 0.931
28 H 0.088 0.912
29 H 0.076 0.924
30 H 0.079 0.921
31 H 0.073 0.927
32 H 0.085 0.915
33 H 0.072 0.928
34 H 0.106 0.894
35 H 0.154 0.846
36 H 0.091 0.909
37 H 0.092 0.908
38 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -5.953 3.347 6.464 9.403
hybrid contribution 0.360 -0.725 -0.432 0.917
sum -5.593 2.622 6.032 8.634
Atomic orbital electron populations
1.22183 0.99567 0.99564 0.99978 1.22248 0.91688 1.02721 1.02404
1.19516 0.95564 0.88532 0.86651 0.93451 1.21088 0.90912 1.40390
1.00691 0.92169 1.24924 0.97867 0.95629 0.95823 1.69917 1.34714
1.43069 1.05617 0.86600 0.86097 0.78283 0.77036 1.20974 1.21448
1.19879 1.65619 1.18741 1.31064 1.06104 1.23250 0.99223 0.95876
0.92101 1.22322 0.97864 0.98052 0.98143 1.22306 0.97934 0.99755
0.95458 1.22506 0.92806 0.94550 0.94195 0.91393 1.22115 0.95089
0.94796 1.04480 1.23239 1.00222 1.03124 0.93742 1.22742 1.04595
0.95155 0.98879 0.93384 0.94844 0.93593 0.89470 0.93555 0.93131
0.91221 0.92353 0.92131 0.92742 0.91498 0.92829 0.89412 0.84616
0.90919 0.90827 0.88843
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.03 7.94 37.16 0.30 -2.73 16
2 C -0.15 -3.47 4.74 -26.73 -0.13 -3.60 16
3 C 0.20 4.88 0.67 -68.86 -0.05 4.84 16
4 H 0.05 1.26 6.53 -51.93 -0.34 0.92 16
5 C -0.49 -13.15 8.02 -34.44 -0.28 -13.42 16
6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16
7 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16
8 N -0.89 -25.12 11.72 55.43 0.65 -24.47 16
9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16
10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16
11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
13 N -0.49 -10.15 3.95 -215.61 -0.85 -11.00 16
14 C 0.02 0.44 5.37 -2.18 -0.01 0.43 16
15 C -0.13 -1.94 7.00 -25.35 -0.18 -2.12 16
16 C -0.12 -1.80 6.47 -25.35 -0.16 -1.96 16
17 C 0.07 1.23 2.09 -66.07 -0.14 1.09 16
18 H 0.07 1.27 3.98 -51.93 -0.21 1.07 16
19 C -0.15 -2.57 5.77 -90.62 -0.52 -3.10 16
20 C -0.17 -3.21 8.91 -26.73 -0.24 -3.45 16
21 C -0.18 -2.95 9.26 -26.73 -0.25 -3.20 16
22 H 0.05 0.95 7.47 -51.93 -0.39 0.56 16
23 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16
24 H 0.05 0.82 5.00 -51.93 -0.26 0.56 16
25 H 0.09 2.27 6.42 -51.93 -0.33 1.94 16
26 H 0.05 1.04 5.82 -51.93 -0.30 0.74 16
27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16
29 H 0.06 1.11 3.93 -51.93 -0.20 0.91 16
30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
32 H 0.07 1.01 6.84 -51.93 -0.36 0.65 16
33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
34 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16
35 H 0.14 3.13 5.10 -51.93 -0.27 2.87 16
36 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16
37 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16
38 H 0.09 1.63 7.84 -51.93 -0.41 1.23 16
LS Contribution 278.26 15.07 4.19 4.19
Total: -1.00 -26.78 278.26 -8.77 -35.55
By element:
Atomic # 1 Polarization: 11.15 SS G_CDS: -5.99 Total: 5.16 kcal
Atomic # 6 Polarization: -23.98 SS G_CDS: -1.75 Total: -25.73 kcal
Atomic # 7 Polarization: -35.26 SS G_CDS: -0.20 Total: -35.47 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -26.78 -8.77 -35.55 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706661385.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.145 kcal
(2) G-P(sol) polarization free energy of solvation -26.780 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.546 kcal
(6) G-S(sol) free energy of system = (1) + (5) 41.599 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds