Wall clock time and date at job start Mon Mar 30 2020 02:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47085 * 2 1 4 4 H 1.08998 * 109.47241 * 304.97875 * 3 2 1 5 5 C 1.50701 * 109.47202 * 184.97636 * 3 2 1 6 6 H 1.07991 * 119.99622 * 245.45950 * 5 3 2 7 7 C 1.37880 * 119.99728 * 65.45457 * 5 3 2 8 8 N 1.31506 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99570 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47121 * 90.00241 * 9 7 5 11 11 H 1.48503 * 109.46707 * 209.99899 * 9 7 5 12 12 H 1.48497 * 109.47303 * 330.00308 * 9 7 5 13 13 N 1.46902 * 109.46941 * 64.97528 * 3 2 1 14 14 C 1.48564 * 110.99991 * 32.00987 * 13 3 2 15 15 C 1.54384 * 104.59229 * 200.95805 * 14 13 3 16 16 C 1.54259 * 105.06202 * 23.85165 * 15 14 13 17 17 C 1.48556 * 110.99998 * 276.58905 * 13 3 2 18 18 H 1.09000 * 110.51475 * 40.21324 * 17 13 3 19 19 C 1.53005 * 110.41162 * 277.81987 * 17 13 3 20 20 C 1.53000 * 117.49863 * 10.69154 * 19 17 13 21 21 C 1.52998 * 117.49786 * 302.06939 * 19 17 13 22 22 H 1.08997 * 109.47068 * 48.19792 * 1 2 3 23 23 H 1.09008 * 109.46853 * 168.19311 * 1 2 3 24 24 H 1.08999 * 109.47395 * 288.19231 * 1 2 3 25 25 H 1.08996 * 109.47222 * 239.99685 * 2 1 3 26 26 H 1.09002 * 109.46564 * 119.99876 * 2 1 3 27 27 H 0.97000 * 120.00009 * 179.97438 * 8 7 5 28 28 H 1.08993 * 110.40918 * 82.17834 * 14 13 3 29 29 H 1.09001 * 110.50742 * 319.78231 * 14 13 3 30 30 H 1.09002 * 110.32446 * 264.95757 * 15 14 13 31 31 H 1.08993 * 110.32031 * 142.74630 * 15 14 13 32 32 H 1.09000 * 110.32325 * 241.10339 * 16 15 14 33 33 H 1.08997 * 110.41235 * 118.94128 * 16 15 14 34 34 H 1.09000 * 115.56234 * 156.38845 * 19 17 13 35 35 H 1.09001 * 117.49499 * 0.02562 * 20 19 17 36 36 H 1.09002 * 117.49683 * 145.02098 * 20 19 17 37 37 H 1.08999 * 117.50009 * 214.97731 * 21 19 17 38 38 H 1.09001 * 117.49985 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9814 -0.8420 5 6 3.5420 1.4443 -0.1232 6 1 4.1501 1.8086 0.6914 7 6 4.1396 0.9807 -1.2761 8 7 3.3990 0.5374 -2.2682 9 14 6.0014 0.9823 -1.4285 10 1 6.5403 -0.3072 -0.9266 11 1 6.3811 1.1564 -2.8536 12 1 6.5628 2.0990 -0.6266 13 7 1.6509 2.0994 1.2550 14 6 1.6120 1.1253 2.3760 15 6 0.7061 1.7881 3.4360 16 6 -0.1822 2.7711 2.6460 17 6 0.2617 2.6196 1.1751 18 1 -0.3824 1.9107 0.6548 19 6 0.2398 3.9766 0.4686 20 6 1.5227 4.4293 -0.2316 21 6 1.0848 5.1006 1.0716 22 1 -0.3633 0.6850 -0.7661 23 1 -0.3633 -1.0060 -0.2103 24 1 -0.3634 0.3208 0.9763 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 3.8194 0.2116 -3.0794 28 1 2.6131 0.9669 2.7769 29 1 1.1815 0.1799 2.0457 30 1 1.3098 2.3266 4.1666 31 1 0.0913 1.0369 3.9316 32 1 -0.0145 3.7922 2.9888 33 1 -1.2335 2.5042 2.7536 34 1 -0.7090 4.2519 0.0081 35 1 2.3821 3.7601 -0.1893 36 1 1.4178 5.0023 -1.1529 37 1 0.6919 6.1153 1.0077 38 1 1.6559 4.8735 1.9718 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706661385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:08 Heat of formation + Delta-G solvation = 27.032086 kcal Electronic energy + Delta-G solvation = -16751.111867 eV Core-core repulsion = 14401.170912 eV Total energy + Delta-G solvation = -2349.940956 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.92243 -37.15880 -35.58507 -33.57318 -31.11185 -29.60910 -28.30137 -24.96138 -23.74557 -23.35389 -21.96476 -20.71047 -19.81496 -18.26976 -17.41159 -16.96398 -16.18360 -15.73705 -14.87332 -14.77178 -14.63216 -14.06544 -13.67290 -13.30931 -13.07503 -12.88385 -12.78449 -12.60864 -12.27608 -12.08546 -12.05054 -11.83580 -11.68779 -11.62783 -11.44739 -11.12572 -10.89003 -10.76256 -10.47725 -10.36157 -8.71813 -8.05814 -6.13798 1.40071 1.41889 1.51733 2.45041 3.11603 3.22554 3.57535 3.94555 4.03538 4.27536 4.32128 4.38134 4.41995 4.46535 4.52505 4.61082 4.68935 4.81935 4.93026 4.98647 5.00608 5.07158 5.14018 5.21046 5.22918 5.31738 5.35695 5.45564 5.48116 5.50923 5.65802 5.77728 5.81003 5.87168 6.33037 6.61394 6.80175 7.01064 7.54602 9.00042 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.010744 C = 0.009602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.104700 B = 2605.498991 C = 2915.399726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.146 4.146 3 C 0.218 3.782 4 H 0.015 0.985 5 C -0.502 4.502 6 H 0.045 0.955 7 C 0.014 3.986 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.503 5.503 14 C 0.018 3.982 15 C -0.116 4.116 16 C -0.109 4.109 17 C 0.061 3.939 18 H 0.064 0.936 19 C -0.144 4.144 20 C -0.194 4.194 21 C -0.151 4.151 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.258 0.742 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.716 3.608 8.193 11.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.186 4.186 3 C 0.110 3.890 4 H 0.033 0.967 5 C -0.541 4.541 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.774 3.226 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.226 5.226 14 C -0.110 4.110 15 C -0.154 4.154 16 C -0.147 4.147 17 C -0.047 4.047 18 H 0.081 0.919 19 C -0.162 4.162 20 C -0.231 4.231 21 C -0.187 4.187 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.121 0.879 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.295 3.972 8.100 11.602 hybrid contribution 0.791 -0.900 -0.928 1.515 sum -6.504 3.072 7.172 10.158 Atomic orbital electron populations 1.22028 0.96588 1.00473 1.00873 1.22093 0.94346 1.01564 1.00566 1.19133 0.93737 0.88801 0.87303 0.96746 1.21338 0.92732 1.39779 1.00209 0.93660 1.25578 1.01616 0.95581 0.95689 1.70034 1.36063 1.43939 1.05922 0.85718 0.81673 0.78265 0.76919 1.20448 1.21167 1.19768 1.65509 1.20961 1.31180 1.04974 1.23288 0.99304 0.95827 0.92582 1.22282 0.97490 0.98508 0.97135 1.22289 0.99249 1.00264 0.92850 1.22632 0.91102 0.94534 0.96466 0.91856 1.22260 0.95029 0.95032 1.03927 1.23028 1.00176 1.04204 0.95684 1.22747 1.03045 0.96273 0.96676 0.94211 0.93234 0.91535 0.93079 0.93509 0.93288 0.92919 0.92676 0.91388 0.90193 0.90749 0.90275 0.87443 0.88779 0.90466 0.87931 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 7.94 71.98 0.57 -4.83 16 2 C -0.15 -6.82 4.74 30.60 0.15 -6.68 16 3 C 0.22 10.72 0.67 44.17 0.03 10.75 16 4 H 0.01 0.81 6.53 -2.39 -0.02 0.80 16 5 C -0.50 -27.77 8.02 25.60 0.21 -27.57 16 6 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16 7 C 0.01 0.76 5.30 84.66 0.45 1.21 16 8 N -0.92 -53.37 11.72 21.45 0.25 -53.11 16 9 Si 0.95 44.77 29.54 68.60 2.03 46.79 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.50 -20.70 3.95 -836.05 -3.30 -24.01 16 14 C 0.02 0.66 5.37 86.45 0.46 1.12 16 15 C -0.12 -3.21 7.00 31.49 0.22 -2.99 16 16 C -0.11 -2.95 6.47 31.49 0.20 -2.74 16 17 C 0.06 2.10 2.09 45.07 0.09 2.20 16 18 H 0.06 2.25 3.98 -2.39 -0.01 2.24 16 19 C -0.14 -4.82 5.77 -10.79 -0.06 -4.89 16 20 C -0.19 -7.52 8.91 30.59 0.27 -7.25 16 21 C -0.15 -4.72 9.26 30.59 0.28 -4.43 16 22 H 0.04 1.55 7.47 -2.39 -0.02 1.53 16 23 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.07 2.23 5.00 -2.39 -0.01 2.22 16 25 H 0.05 2.74 6.42 -2.39 -0.02 2.73 16 26 H 0.05 2.13 5.82 -2.39 -0.01 2.12 16 27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.06 2.04 3.93 -2.39 -0.01 2.03 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.93 6.84 -2.39 -0.02 1.92 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 35 H 0.09 4.52 5.10 -2.39 -0.01 4.51 16 36 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.09 2.83 7.84 -2.39 -0.02 2.81 16 Total: -1.00 -59.33 278.26 2.88 -56.45 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.03 Total: 19.97 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 2.88 Total: -46.09 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -3.05 Total: -77.12 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -59.33 2.88 -56.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706661385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.478 kcal (2) G-P(sol) polarization free energy of solvation -59.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds