Wall clock time and date at job start Mon Mar 30 2020 02:38:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52998 * 109.47085 * 2 1
4 4 H 1.08998 * 109.47241 * 304.97875 * 3 2 1
5 5 C 1.50701 * 109.47202 * 184.97636 * 3 2 1
6 6 H 1.07991 * 119.99622 * 245.45950 * 5 3 2
7 7 C 1.37880 * 119.99728 * 65.45457 * 5 3 2
8 8 N 1.31506 * 120.00113 * 0.02562 * 7 5 3
9 9 Si 1.86801 * 119.99570 * 180.02562 * 7 5 3
10 10 H 1.48498 * 109.47121 * 90.00241 * 9 7 5
11 11 H 1.48503 * 109.46707 * 209.99899 * 9 7 5
12 12 H 1.48497 * 109.47303 * 330.00308 * 9 7 5
13 13 N 1.46902 * 109.46941 * 64.97528 * 3 2 1
14 14 C 1.48564 * 110.99991 * 32.00987 * 13 3 2
15 15 C 1.54384 * 104.59229 * 200.95805 * 14 13 3
16 16 C 1.54259 * 105.06202 * 23.85165 * 15 14 13
17 17 C 1.48556 * 110.99998 * 276.58905 * 13 3 2
18 18 H 1.09000 * 110.51475 * 40.21324 * 17 13 3
19 19 C 1.53005 * 110.41162 * 277.81987 * 17 13 3
20 20 C 1.53000 * 117.49863 * 10.69154 * 19 17 13
21 21 C 1.52998 * 117.49786 * 302.06939 * 19 17 13
22 22 H 1.08997 * 109.47068 * 48.19792 * 1 2 3
23 23 H 1.09008 * 109.46853 * 168.19311 * 1 2 3
24 24 H 1.08999 * 109.47395 * 288.19231 * 1 2 3
25 25 H 1.08996 * 109.47222 * 239.99685 * 2 1 3
26 26 H 1.09002 * 109.46564 * 119.99876 * 2 1 3
27 27 H 0.97000 * 120.00009 * 179.97438 * 8 7 5
28 28 H 1.08993 * 110.40918 * 82.17834 * 14 13 3
29 29 H 1.09001 * 110.50742 * 319.78231 * 14 13 3
30 30 H 1.09002 * 110.32446 * 264.95757 * 15 14 13
31 31 H 1.08993 * 110.32031 * 142.74630 * 15 14 13
32 32 H 1.09000 * 110.32325 * 241.10339 * 16 15 14
33 33 H 1.08997 * 110.41235 * 118.94128 * 16 15 14
34 34 H 1.09000 * 115.56234 * 156.38845 * 19 17 13
35 35 H 1.09001 * 117.49499 * 0.02562 * 20 19 17
36 36 H 1.09002 * 117.49683 * 145.02098 * 20 19 17
37 37 H 1.08999 * 117.50009 * 214.97731 * 21 19 17
38 38 H 1.09001 * 117.49985 * 359.97438 * 21 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6057 1.9814 -0.8420
5 6 3.5420 1.4443 -0.1232
6 1 4.1501 1.8086 0.6914
7 6 4.1396 0.9807 -1.2761
8 7 3.3990 0.5374 -2.2682
9 14 6.0014 0.9823 -1.4285
10 1 6.5403 -0.3072 -0.9266
11 1 6.3811 1.1564 -2.8536
12 1 6.5628 2.0990 -0.6266
13 7 1.6509 2.0994 1.2550
14 6 1.6120 1.1253 2.3760
15 6 0.7061 1.7881 3.4360
16 6 -0.1822 2.7711 2.6460
17 6 0.2617 2.6196 1.1751
18 1 -0.3824 1.9107 0.6548
19 6 0.2398 3.9766 0.4686
20 6 1.5227 4.4293 -0.2316
21 6 1.0848 5.1006 1.0716
22 1 -0.3633 0.6850 -0.7661
23 1 -0.3633 -1.0060 -0.2103
24 1 -0.3634 0.3208 0.9763
25 1 1.8934 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8900
27 1 3.8194 0.2116 -3.0794
28 1 2.6131 0.9669 2.7769
29 1 1.1815 0.1799 2.0457
30 1 1.3098 2.3266 4.1666
31 1 0.0913 1.0369 3.9316
32 1 -0.0145 3.7922 2.9888
33 1 -1.2335 2.5042 2.7536
34 1 -0.7090 4.2519 0.0081
35 1 2.3821 3.7601 -0.1893
36 1 1.4178 5.0023 -1.1529
37 1 0.6919 6.1153 1.0077
38 1 1.6559 4.8735 1.9718
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000706661385.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:08
Heat of formation + Delta-G solvation = 27.032086 kcal
Electronic energy + Delta-G solvation = -16751.111867 eV
Core-core repulsion = 14401.170912 eV
Total energy + Delta-G solvation = -2349.940956 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 223.163 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.92243 -37.15880 -35.58507 -33.57318 -31.11185 -29.60910 -28.30137 -24.96138
-23.74557 -23.35389 -21.96476 -20.71047 -19.81496 -18.26976 -17.41159 -16.96398
-16.18360 -15.73705 -14.87332 -14.77178 -14.63216 -14.06544 -13.67290 -13.30931
-13.07503 -12.88385 -12.78449 -12.60864 -12.27608 -12.08546 -12.05054 -11.83580
-11.68779 -11.62783 -11.44739 -11.12572 -10.89003 -10.76256 -10.47725 -10.36157
-8.71813 -8.05814 -6.13798 1.40071 1.41889 1.51733 2.45041 3.11603
3.22554 3.57535 3.94555 4.03538 4.27536 4.32128 4.38134 4.41995
4.46535 4.52505 4.61082 4.68935 4.81935 4.93026 4.98647 5.00608
5.07158 5.14018 5.21046 5.22918 5.31738 5.35695 5.45564 5.48116
5.50923 5.65802 5.77728 5.81003 5.87168 6.33037 6.61394 6.80175
7.01064 7.54602 9.00042
Molecular weight = 223.16amu
Principal moments of inertia in cm(-1)
A = 0.027255 B = 0.010744 C = 0.009602
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1027.104700 B = 2605.498991 C = 2915.399726
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.146 4.146
3 C 0.218 3.782
4 H 0.015 0.985
5 C -0.502 4.502
6 H 0.045 0.955
7 C 0.014 3.986
8 N -0.919 5.919
9 Si 0.947 3.053
10 H -0.278 1.278
11 H -0.286 1.286
12 H -0.273 1.273
13 N -0.503 5.503
14 C 0.018 3.982
15 C -0.116 4.116
16 C -0.109 4.109
17 C 0.061 3.939
18 H 0.064 0.936
19 C -0.144 4.144
20 C -0.194 4.194
21 C -0.151 4.151
22 H 0.039 0.961
23 H 0.049 0.951
24 H 0.066 0.934
25 H 0.051 0.949
26 H 0.046 0.954
27 H 0.258 0.742
28 H 0.052 0.948
29 H 0.055 0.945
30 H 0.067 0.933
31 H 0.079 0.921
32 H 0.074 0.926
33 H 0.079 0.921
34 H 0.108 0.892
35 H 0.094 0.906
36 H 0.077 0.923
37 H 0.102 0.898
38 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.716 3.608 8.193 11.819
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.186 4.186
3 C 0.110 3.890
4 H 0.033 0.967
5 C -0.541 4.541
6 H 0.063 0.937
7 C -0.185 4.185
8 N -0.560 5.560
9 Si 0.774 3.226
10 H -0.204 1.204
11 H -0.212 1.212
12 H -0.198 1.198
13 N -0.226 5.226
14 C -0.110 4.110
15 C -0.154 4.154
16 C -0.147 4.147
17 C -0.047 4.047
18 H 0.081 0.919
19 C -0.162 4.162
20 C -0.231 4.231
21 C -0.187 4.187
22 H 0.058 0.942
23 H 0.068 0.932
24 H 0.085 0.915
25 H 0.069 0.931
26 H 0.065 0.935
27 H 0.067 0.933
28 H 0.071 0.929
29 H 0.073 0.927
30 H 0.086 0.914
31 H 0.098 0.902
32 H 0.093 0.907
33 H 0.097 0.903
34 H 0.126 0.874
35 H 0.112 0.888
36 H 0.095 0.905
37 H 0.121 0.879
38 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -7.295 3.972 8.100 11.602
hybrid contribution 0.791 -0.900 -0.928 1.515
sum -6.504 3.072 7.172 10.158
Atomic orbital electron populations
1.22028 0.96588 1.00473 1.00873 1.22093 0.94346 1.01564 1.00566
1.19133 0.93737 0.88801 0.87303 0.96746 1.21338 0.92732 1.39779
1.00209 0.93660 1.25578 1.01616 0.95581 0.95689 1.70034 1.36063
1.43939 1.05922 0.85718 0.81673 0.78265 0.76919 1.20448 1.21167
1.19768 1.65509 1.20961 1.31180 1.04974 1.23288 0.99304 0.95827
0.92582 1.22282 0.97490 0.98508 0.97135 1.22289 0.99249 1.00264
0.92850 1.22632 0.91102 0.94534 0.96466 0.91856 1.22260 0.95029
0.95032 1.03927 1.23028 1.00176 1.04204 0.95684 1.22747 1.03045
0.96273 0.96676 0.94211 0.93234 0.91535 0.93079 0.93509 0.93288
0.92919 0.92676 0.91388 0.90193 0.90749 0.90275 0.87443 0.88779
0.90466 0.87931 0.89607
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.40 7.94 71.98 0.57 -4.83 16
2 C -0.15 -6.82 4.74 30.60 0.15 -6.68 16
3 C 0.22 10.72 0.67 44.17 0.03 10.75 16
4 H 0.01 0.81 6.53 -2.39 -0.02 0.80 16
5 C -0.50 -27.77 8.02 25.60 0.21 -27.57 16
6 H 0.05 2.57 7.81 -2.91 -0.02 2.55 16
7 C 0.01 0.76 5.30 84.66 0.45 1.21 16
8 N -0.92 -53.37 11.72 21.45 0.25 -53.11 16
9 Si 0.95 44.77 29.54 68.60 2.03 46.79 16
10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16
12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16
13 N -0.50 -20.70 3.95 -836.05 -3.30 -24.01 16
14 C 0.02 0.66 5.37 86.45 0.46 1.12 16
15 C -0.12 -3.21 7.00 31.49 0.22 -2.99 16
16 C -0.11 -2.95 6.47 31.49 0.20 -2.74 16
17 C 0.06 2.10 2.09 45.07 0.09 2.20 16
18 H 0.06 2.25 3.98 -2.39 -0.01 2.24 16
19 C -0.14 -4.82 5.77 -10.79 -0.06 -4.89 16
20 C -0.19 -7.52 8.91 30.59 0.27 -7.25 16
21 C -0.15 -4.72 9.26 30.59 0.28 -4.43 16
22 H 0.04 1.55 7.47 -2.39 -0.02 1.53 16
23 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16
24 H 0.07 2.23 5.00 -2.39 -0.01 2.22 16
25 H 0.05 2.74 6.42 -2.39 -0.02 2.73 16
26 H 0.05 2.13 5.82 -2.39 -0.01 2.12 16
27 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16
28 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16
29 H 0.06 2.04 3.93 -2.39 -0.01 2.03 16
30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16
32 H 0.07 1.93 6.84 -2.39 -0.02 1.92 16
33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16
34 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16
35 H 0.09 4.52 5.10 -2.39 -0.01 4.51 16
36 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16
37 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
38 H 0.09 2.83 7.84 -2.39 -0.02 2.81 16
Total: -1.00 -59.33 278.26 2.88 -56.45
By element:
Atomic # 1 Polarization: 18.94 SS G_CDS: 1.03 Total: 19.97 kcal
Atomic # 6 Polarization: -48.97 SS G_CDS: 2.88 Total: -46.09 kcal
Atomic # 7 Polarization: -74.07 SS G_CDS: -3.05 Total: -77.12 kcal
Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal
Total: -59.33 2.88 -56.45 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000706661385.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 83.478 kcal
(2) G-P(sol) polarization free energy of solvation -59.328 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.150 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.446 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds