Wall clock time and date at job start Mon Mar 30 2020 02:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47051 * 2 1 4 4 H 1.09000 * 109.47076 * 180.34107 * 3 2 1 5 5 C 1.50697 * 109.47288 * 300.34325 * 3 2 1 6 6 H 1.08003 * 120.00155 * 120.00259 * 5 3 2 7 7 C 1.37883 * 119.99598 * 299.99891 * 5 3 2 8 8 N 1.31511 * 120.00350 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99623 * 179.97438 * 7 5 3 10 10 H 1.48493 * 109.47358 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.46761 * 120.00316 * 9 7 5 12 12 H 1.48500 * 109.47266 * 240.00153 * 9 7 5 13 13 N 1.46905 * 109.47230 * 60.34434 * 3 2 1 14 14 C 1.48556 * 111.00232 * 50.06697 * 13 3 2 15 15 C 1.54376 * 104.70231 * 159.10063 * 14 13 3 16 16 C 1.54268 * 105.05880 * 336.08774 * 15 14 13 17 17 C 1.48854 * 111.13214 * 165.38861 * 13 3 2 18 18 H 1.08998 * 110.39752 * 319.79352 * 17 13 3 19 19 C 1.52997 * 110.49317 * 82.16594 * 17 13 3 20 20 C 1.53001 * 117.49797 * 245.46315 * 19 17 13 21 21 C 1.53004 * 117.50145 * 176.80525 * 19 17 13 22 22 H 1.09001 * 109.47121 * 185.49725 * 1 2 3 23 23 H 1.08992 * 109.47341 * 305.50059 * 1 2 3 24 24 H 1.08998 * 109.47171 * 65.50461 * 1 2 3 25 25 H 1.09002 * 109.47551 * 239.99586 * 2 1 3 26 26 H 1.09006 * 109.47049 * 119.99983 * 2 1 3 27 27 H 0.96994 * 120.00057 * 179.97438 * 8 7 5 28 28 H 1.08999 * 110.41202 * 40.25852 * 14 13 3 29 29 H 1.09004 * 110.40967 * 277.94234 * 14 13 3 30 30 H 1.09004 * 110.32270 * 94.97673 * 15 14 13 31 31 H 1.08993 * 110.32835 * 217.19461 * 15 14 13 32 32 H 1.09005 * 110.32127 * 118.89246 * 16 15 14 33 33 H 1.08994 * 110.32653 * 241.00148 * 16 15 14 34 34 H 1.08999 * 115.55213 * 31.12740 * 19 17 13 35 35 H 1.09000 * 117.49789 * 0.02562 * 20 19 17 36 36 H 1.09003 * 117.50114 * 145.01741 * 20 19 17 37 37 H 1.09001 * 117.50226 * 214.97999 * 21 19 17 38 38 H 1.09006 * 117.49501 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 3.1299 1.4425 -0.0061 5 6 1.5307 2.1553 -1.2261 6 1 0.9104 3.0333 -1.1218 7 6 1.8568 1.6867 -2.4812 8 7 2.6126 0.6180 -2.6083 9 14 1.2250 2.5700 -4.0011 10 1 0.4024 3.7359 -3.5900 11 1 2.3752 3.0386 -4.8152 12 1 0.3956 1.6378 -4.8065 13 7 1.5571 2.1326 1.2036 14 6 1.8352 1.3323 2.4239 15 6 1.7891 2.3533 3.5809 16 6 2.0941 3.7160 2.9253 17 6 2.2988 3.4036 1.4274 18 1 3.3580 3.2689 1.2084 19 6 1.7148 4.5237 0.5641 20 6 2.6054 5.1055 -0.5355 21 6 2.3114 5.9235 0.7245 22 1 -0.3633 -1.0229 0.0984 23 1 -0.3633 0.5967 0.8366 24 1 -0.3633 0.4261 -0.9351 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.8417 0.2882 -3.4912 28 1 2.8218 0.8734 2.3609 29 1 1.0696 0.5684 2.5602 30 1 0.7987 2.3654 4.0359 31 1 2.5467 2.1142 4.3272 32 1 1.2534 4.3969 3.0587 33 1 3.0004 4.1466 3.3511 34 1 0.6462 4.4523 0.3611 35 1 3.6072 4.6900 -0.6442 36 1 2.1227 5.4172 -1.4618 37 1 1.6355 6.7730 0.6267 38 1 3.1198 6.0464 1.4454 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706661388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:11 Heat of formation + Delta-G solvation = 23.153433 kcal Electronic energy + Delta-G solvation = -16587.365638 eV Core-core repulsion = 14237.256491 eV Total energy + Delta-G solvation = -2350.109147 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.82422 -35.85252 -34.18935 -31.40102 -29.52218 -27.98172 -25.98394 -23.40667 -21.89466 -21.69698 -20.72627 -19.06858 -18.69759 -16.23258 -15.36575 -15.05786 -14.49373 -14.00958 -13.48912 -13.32357 -12.73262 -12.38622 -12.20974 -11.74260 -11.57322 -11.37770 -10.98202 -10.92026 -10.67474 -10.55728 -10.52237 -10.28552 -9.99234 -9.79162 -9.71054 -9.56519 -9.35342 -9.06254 -8.68380 -8.30025 -7.25901 -5.90995 -3.90788 3.33090 3.41808 3.45312 4.44487 4.51537 4.95270 5.27982 5.32188 5.42341 5.53587 5.58095 5.73906 5.84577 5.99536 6.10715 6.11576 6.22116 6.32143 6.38023 6.47194 6.53533 6.62654 6.63602 6.64861 6.69664 6.78296 6.81707 7.02552 7.13457 7.29824 7.44678 7.65801 7.75504 7.96082 8.19417 8.41030 8.65623 9.14562 9.71436 11.16498 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023403 B = 0.013039 C = 0.009178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.151341 B = 2146.941765 C = 3049.995091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C 0.208 3.792 4 H -0.003 1.003 5 C -0.475 4.475 6 H 0.068 0.932 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.494 5.494 14 C 0.032 3.968 15 C -0.124 4.124 16 C -0.117 4.117 17 C 0.105 3.895 18 H 0.040 0.960 19 C -0.099 4.099 20 C -0.158 4.158 21 C -0.203 4.203 22 H 0.014 0.986 23 H 0.045 0.955 24 H 0.055 0.945 25 H 0.091 0.909 26 H 0.012 0.988 27 H 0.256 0.744 28 H 0.030 0.970 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 4.774 8.168 9.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.153 4.153 3 C 0.101 3.899 4 H 0.015 0.985 5 C -0.514 4.514 6 H 0.086 0.914 7 C -0.143 4.143 8 N -0.539 5.539 9 Si 0.714 3.286 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.214 1.214 13 N -0.219 5.219 14 C -0.096 4.096 15 C -0.162 4.162 16 C -0.155 4.155 17 C -0.004 4.004 18 H 0.058 0.942 19 C -0.118 4.118 20 C -0.195 4.195 21 C -0.240 4.240 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.074 0.926 25 H 0.109 0.891 26 H 0.031 0.969 27 H 0.066 0.934 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.199 4.736 7.923 9.309 hybrid contribution 0.674 0.155 -0.960 1.183 sum -0.525 4.891 6.963 8.525 Atomic orbital electron populations 1.21480 0.97313 0.97197 1.01852 1.21613 0.95199 0.98393 1.00092 1.19440 0.92835 0.90801 0.86806 0.98542 1.21136 1.29905 1.11344 0.88997 0.91351 1.24871 0.95605 0.95173 0.98697 1.69885 1.37958 1.23344 1.22725 0.86625 0.78553 0.79807 0.83568 1.19774 1.21398 1.21350 1.65494 1.52081 1.02340 1.01957 1.22991 0.99091 0.96307 0.91227 1.22299 1.00873 0.95538 0.97531 1.22306 1.00746 0.97038 0.95447 1.22002 0.95177 0.91092 0.92126 0.94156 1.21920 0.99041 0.90945 0.99889 1.22779 1.01234 1.02979 0.92535 1.23027 1.03802 0.95300 1.01897 0.96716 0.93602 0.92577 0.89057 0.96922 0.93361 0.95154 0.90958 0.91802 0.92575 0.91439 0.92643 0.87622 0.89352 0.89669 0.89856 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.32 37.16 0.35 -2.33 16 2 C -0.11 -2.74 4.99 -26.73 -0.13 -2.87 16 3 C 0.21 5.09 1.64 -68.87 -0.11 4.98 16 4 H 0.00 -0.08 7.78 -51.93 -0.40 -0.49 16 5 C -0.47 -12.39 6.17 -34.44 -0.21 -12.60 16 6 H 0.07 1.80 5.65 -52.48 -0.30 1.50 16 7 C 0.06 1.52 5.30 -17.82 -0.09 1.43 16 8 N -0.90 -25.39 11.32 55.43 0.63 -24.76 16 9 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.49 -10.39 4.16 -215.38 -0.90 -11.28 16 14 C 0.03 0.59 4.81 -2.19 -0.01 0.58 16 15 C -0.12 -1.87 7.00 -25.35 -0.18 -2.05 16 16 C -0.12 -1.82 6.29 -25.34 -0.16 -1.98 16 17 C 0.10 2.00 2.45 -65.91 -0.16 1.84 16 18 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 19 C -0.10 -1.85 3.32 -90.62 -0.30 -2.15 16 20 C -0.16 -2.91 9.42 -26.69 -0.25 -3.17 16 21 C -0.20 -3.14 9.97 -26.69 -0.27 -3.41 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.04 0.97 6.81 -51.93 -0.35 0.62 16 24 H 0.06 1.34 7.41 -51.93 -0.38 0.96 16 25 H 0.09 2.44 6.08 -51.93 -0.32 2.13 16 26 H 0.01 0.27 6.67 -51.93 -0.35 -0.07 16 27 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 28 H 0.03 0.58 7.85 -51.93 -0.41 0.17 16 29 H 0.07 1.31 7.06 -51.93 -0.37 0.94 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.01 7.86 -51.93 -0.41 0.60 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.11 2.12 7.59 -51.93 -0.39 1.73 16 35 H 0.09 1.70 8.07 -51.93 -0.42 1.28 16 36 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 288.73 15.07 4.35 4.35 Total: -1.00 -27.09 288.73 -9.06 -36.15 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.58 Total: 0.99 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -1.53 Total: -21.74 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.27 Total: -36.04 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.09 -9.06 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706661388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.299 kcal (2) G-P(sol) polarization free energy of solvation -27.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds